KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:43:15 2014 Check: 00 .. Name: ENSTTRP00000007634/1-621 Len: 659 Check: 535 Weight: 1.00 Name: bmy_05396T0/1-402 Len: 659 Check: 8739 Weight: 1.00 Name: ENSP00000359233/1-659 Len: 659 Check: 3575 Weight: 1.00 Name: BACU002797/1-656 Len: 659 Check: 7559 Weight: 1.00 Name: ENSBTAP00000033452/1-656 Len: 659 Check: 5718 Weight: 1.00 // 1 50 ENSTTRP00000007634/1-621 ---------- ---------- ---------- -------KKN GKPPLRNNEK bmy_05396T0/1-402 ---------- ---------- ---------- ---------- ---------- ENSP00000359233/1-659 MAAFSKYLTA RNSSLAGAAF LLLCLLHKRR RALGLHGKKS GKPPLQNNEK BACU002797/1-656 MAAFSKYLTV RNSSLAGMAF LLLCLLHKRR RALGLHGKKN GKPPLRNNEK ENSBTAP00000033452/1-656 MAAFSKYLTV RNSSLAGATF LLLCLLHKRR RALGLHSKKN GKPPLQNNEK 51 100 ENSTTRP00000007634/1-621 EGKKERAVVD KVFFSRLTRI LKIMVPRTFC KETGYLILIA VMLVSRTYCD bmy_05396T0/1-402 ---------- ---------- ---MVPRTFC KETGYLILIA VMLVSRTYCD ENSP00000359233/1-659 EGKKERAVVD KVFFSRLIQI LKIMVPRTFC KETGYLVLIA VMLVSRTYCD BACU002797/1-656 EGKKERAVVD KVFFSRLTRI LKIMVPRTFC KETGYLILIA VMLVSRTYCD ENSBTAP00000033452/1-656 EGKKERAVVD RVFFSRLMRI LKIMVPKTFC KETGYLILIA VMLVSRTFCD 101 150 ENSTTRP00000007634/1-621 VWMIQNGTLI ESGIIGRSRK DFKKYLFNFI AAMPLISLVN NFLKFGLNEL bmy_05396T0/1-402 VWMIQNGTLI ESGIIGRSRK DFKKYLFNFI AAMPLISLVN NFLKFGLNEL ENSP00000359233/1-659 VWMIQNGTLI ESGIIGRSRK DFKRYLLNFI AAMPLISLVN NFLKYGLNEL BACU002797/1-656 VWMIQNGTLI ESGIISRNKA LFKKPFFKFV AATPVISLVN NFLKFGLNEL ENSBTAP00000033452/1-656 VWMIQNGTLI ESGIIGRSRK DFKKYLFNFI AAMPLISLVN NFLKFGLNEL 151 200 ENSTTRP00000007634/1-621 KLCFRVRLTK YLYEEYLXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_05396T0/1-402 KLCFRVRLTK YLYEEYLQTF TYYKMGNLDN RIANPDQLLT QDVEKFCNSV ENSP00000359233/1-659 KLCFRVRLTK YLYEEYLQAF TYYKMGNLDN RIANPDQLLT QDVEKFCNSV BACU002797/1-656 KLCFRVRLTK YLYEEYLQTF TYYKMGNLDN RIANPDQLLT QDVEKFCNSV ENSBTAP00000033452/1-656 KLCFRVRLTK YLYEEYLQAF TYYKMGNLDN RIANPDQLLT QDVEKFCNSV 201 250 ENSTTRP00000007634/1-621 XXXXXXXXXP FLDIVLYIFK LTSAIGAQGP ASMMAYLLVS GLFLTRIRRP bmy_05396T0/1-402 VDLYSNLSKP FLDIVLYIFK LTSAIGAQGP ASMMAYLLVS GLFLTRIRRP ENSP00000359233/1-659 VDLYSNLSKP FLDIVLYIFK LTSAIGAQGP ASMMAYLVVS GLFLTRLRRP BACU002797/1-656 VDLYSNLSKP FLDIVLYIFK LTSAIGAQGP ASMMAYLLVS GLFLTRIRRP ENSBTAP00000033452/1-656 VDLYSNLSKP FLDIVLYIFR LTSAIGAQGP ASMMAYLLVS GLFLTRIRRP 251 300 ENSTTRP00000007634/1-621 IGKMTITEQK LEGEYRYVNS RLITNSEEIA FYNGNKREKQ TIHSVFRKLV bmy_05396T0/1-402 IGKMTITEQK LEGEYRYVNS RLITNSEEIA FYNGNKREKQ TIHSVFRKLV ENSP00000359233/1-659 IGKMTITEQK YEGEYRYVNS RLITNSEEIA FYNGNKREKQ TVHSVFRKLV BACU002797/1-656 IGKMTITEQK LEGEYRYVNS RLITNSEEIA FYNGNKREKQ TIYSVFRKLV ENSBTAP00000033452/1-656 IGKMTITEQK LEGEYRYVNS RLITNSEEVA FYNGNKREKQ TIHSVFQKLV 301 350 ENSTTRP00000007634/1-621 EHLHNFILFR FSMGFIDSII AKYFATVVGY VVVSRPFLDL SHPRHLKSSH bmy_05396T0/1-402 EHLHNFILFR FSMGFIDSII AKYFATVVGY VVVSRPFLDL SHPRHLKSSH ENSP00000359233/1-659 EHLHNFILFR FSMGFIDSII AKYLATVVGY LVVSRPFLDL SHPRHLKSTH BACU002797/1-656 EHLHNFILFR FSMGFIDSII AKYFATVVGY VVVSRPFLDL SHPRHLKSSH ENSBTAP00000033452/1-656 EHLHNFILFR FSMGFIDSII AKYLATVVGY LVVSRPFLDL AHPRHLKSSH 351 400 ENSTTRP00000007634/1-621 SELLEDYYQS GRMLLRMSQA LGRIVLAGRE MTRLAGFTAR ITELMQVLKD bmy_05396T0/1-402 SELLEDYYQS GRMLLRMSQA LGRIVLAGRE MTRLAGFTAR ITELMQVLKD ENSP00000359233/1-659 SELLEDYYQS GRMLLRMSQA LGRIVLAGRE MTRLAGFTAR ITELMQVLKD BACU002797/1-656 SELLEDYYQS GRMLLRMSQA LGRIVLAGRE MTRLAGFTAR ITELMQVLKD ENSBTAP00000033452/1-656 SELLEDYYQS GRMLLRMSQA LGRIVLAGRE MTRLAGFTAR ITELMQVLKD 401 450 ENSTTRP00000007634/1-621 LNQGKYERTM VSQQEKGIEG AQGIPLIPGV GEIINADNII KFDHVPLATP bmy_05396T0/1-402 LNQGKYERTM VSQQEKGAQG ---IPLIPGV GEIINADNII KFDHVPLATP ENSP00000359233/1-659 LNHGKYERTM VSQQEKGIEG VQVIPLIPGA GEIIIADNII KFDHVPLATP BACU002797/1-656 LNQGKYERTM VSQQEKGAQG ---IPLIPGV GEIINADNII KFDHVPLATP ENSBTAP00000033452/1-656 LNQGKYERTM VSQQEKGAQD ---IPLIPGI GEIINTDNII KFDHVPLATP 451 500 ENSTTRP00000007634/1-621 NGDILIRDLN FEVRSGANVL ICGPNGCGKS SLFRVL-ELW PLFGGRLTKP bmy_05396T0/1-402 NGDILIRDLN FELKSSS--- ---------- ---------- ---------- ENSP00000359233/1-659 NGDVLIRDLN FEVRSGANVL ICGPNGCGKS SLFRVLGELW PLFGGRLTKP BACU002797/1-656 NGDILIRDLN FEVRSGANVL ICGPNGCGKS SLFRVLGELW PLFGGRLTKP ENSBTAP00000033452/1-656 NGDILIRDLN FEVRSGANVL ICGPNGCGKS SLFRVLGELW PLFGGRLTKP 501 550 ENSTTRP00000007634/1-621 ERGKLFYVPQ RPYMTLGTLR DQVIYPDGRE DQRKKGISDL VLKEHLDNVQ bmy_05396T0/1-402 ---------- ---------- ---------- ---------- ---------- ENSP00000359233/1-659 ERGKLFYVPQ RPYMTLGTLR DQVIYPDGRE DQKRKGISDL VLKEYLDNVQ BACU002797/1-656 ERGKLFYVPQ RPYMTLGTLR DQVIYPDGRE DQKKKGISDL VLKEYLDNVQ ENSBTAP00000033452/1-656 ERGKLFYVPQ RPYMTLGTLR DQVIYPDGKE DQKKKGISDL VLKEYLDNVQ 551 600 ENSTTRP00000007634/1-621 LGHILEREGG WDSVQDWMDV LSGGEKQRMA MARLFYHKPQ FAILDECTSA bmy_05396T0/1-402 -----KRE-- ---------- ---------- ---------- ---MKNC--- ENSP00000359233/1-659 LGHILEREGG WDSVQDWMDV LSGGEKQRMA MARLFYHKPQ FAILDECTSA BACU002797/1-656 LGHILEREGG WDSVQDWMDV LSGGEKQRMA MARLFYHKPQ FAILDECTSA ENSBTAP00000033452/1-656 LSHILEREGG WDSVQDWMDV LSGGEKQRMA MARLFYHKPQ FAILDECTSA 601 650 ENSTTRP00000007634/1-621 VSVDVEDYIY SHCRKVGITL FTVSHRKSLW KHHEYYLHMD GRGNYEFKQI bmy_05396T0/1-402 ---------- --CLNI---- ---------- ---------- ---------- ENSP00000359233/1-659 VSVDVEGYIY SHCRKVGITL FTVSHRKSLW KHHEYYLHMD GRGNYEFKQI BACU002797/1-656 VSVDVEDYIY SHCRKVGITL FTVSHRKSLW KHHEYYLHMD GRGNYEFKQI ENSBTAP00000033452/1-656 VSVDVEDYIY SHCREVGITL FTVSHRKSLW KHHEYYLHMD GRGNYEFKQI 651 700 ENSTTRP00000007634/1-621 TEDTVEFGS bmy_05396T0/1-402 --------- ENSP00000359233/1-659 TEDTVEFGS BACU002797/1-656 TEDTVEFGS ENSBTAP00000033452/1-656 TEDTVEFGS