KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:43:17 2014 Check: 00 .. Name: ENSP00000379258/1-1580 Len: 1598 Check: 342 Weight: 1.00 Name: bmy_05140T0/1-1160 Len: 1598 Check: 5752 Weight: 1.00 Name: BACU012611/1-1031 Len: 1598 Check: 1970 Weight: 1.00 Name: ENSTTRP00000003403/1-1580 Len: 1598 Check: 8816 Weight: 1.00 Name: ENSBTAP00000033519/1-1470 Len: 1598 Check: 1872 Weight: 1.00 // 1 50 ENSP00000379258/1-1580 MEAQSHSSTT TEKKKVENSI VKCSTRTDVS EKAVASSTTS NEDESPGQTY bmy_05140T0/1-1160 ---------- ---------- ---------- ---------- ---------- BACU012611/1-1031 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003403/1-1580 MEAQSQSSTT TEKKKVENSI VKYSTRPDVS EKAVASSTTS NEDESPGQTY ENSBTAP00000033519/1-1470 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000379258/1-1580 HRERRNAITM QPQNVQGLSK VSEEPSTSSD ERASLIKKEI HGSLPHVAEP bmy_05140T0/1-1160 ---------- ---------- ---------- ---------- ---------- BACU012611/1-1031 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003403/1-1580 HRERRNAVTM QPQSVPGLGK ISEEPSTSSD ERASLIKKEI HGSLPHLAEP ENSBTAP00000033519/1-1470 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000379258/1-1580 SVPYRGTVFA MDPRNGYMEP HYHPPHLFPA FHPPVPIDAR HHEGRYHYDP bmy_05140T0/1-1160 ---------- ---------- ---------- ---------- ---------- BACU012611/1-1031 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003403/1-1580 SVPYRGAV-A MDPRNGYMEP HYHPPHLFPA FHPPVPIDAR HHEGRYHYDP ENSBTAP00000033519/1-1470 ---------- -------MEP HYHPPHLFPA FHPPVPIDAR HHEGRYHYDP 151 200 ENSP00000379258/1-1580 SPIPPLHMTS ALSSSPTYPD LPFIRISPHR NPTAASESPF SPPHPYINPY bmy_05140T0/1-1160 ---------- ---------- ---------- ---------- ---------- BACU012611/1-1031 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003403/1-1580 SPIPPLHVPS ALSSSPTYSD LPFIRISPHR NPAAPSESPF SPPHPYINPY ENSBTAP00000033519/1-1470 SPIPPLHVPS ALSSSPTYSD LPFIRISPHR NPAAASESPF SPPHPYINPY 201 250 ENSP00000379258/1-1580 MDYIRSLHSS PSLSMISATR GLSPTDAPHA GVSPAEYYHQ MALLTGQRSP bmy_05140T0/1-1160 ---------- ---------- ---------- ---------- MVKVKAKQTK BACU012611/1-1031 ---------- ---------- ---------- ---------- ---------M ENSTTRP00000003403/1-1580 MDYIRSLHSS PSLSMISAAR GLSPTDAPHA GVSPAEYYHQ MALLAGQRSP ENSBTAP00000033519/1-1470 MDYIRSLHSS PSLSMISAAR GLSPTDAPHA GVSPAEYYHQ MALLAGQRSP 251 300 ENSP00000379258/1-1580 YADIIPSAAT AGTGAIHMEY LHAMDSTRFS SPRLSARPSR KRTLSISPLS bmy_05140T0/1-1160 YAGLLLRYDD DGDGD----- ---------- ---------- ---------- BACU012611/1-1031 FMALLLMMDV VG-------- ---------- ---------- ---------- ENSTTRP00000003403/1-1580 YADIIPSAAT AGAGAIHMEY LHAMDSTRFP SPRLSARPSR KRTLSISPLS ENSBTAP00000033519/1-1470 YADIIPSAAT AGAGAIHMEY LHAMDSTRFP SPRLSARPSR KRTLSISPLS 301 350 ENSP00000379258/1-1580 DHSFDLQTMI RTSPNSLVTI LNNSRSSSSA SGSYGHLSAS AISPALSFTY bmy_05140T0/1-1160 ---------- ---------- ---------- ---------- ---------- BACU012611/1-1031 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003403/1-1580 DHSFDLQTMI RTSPNSLVTI LNNSRSSSSA SGSYGHLSAS AISPAVSFTY ENSBTAP00000033519/1-1470 DHSFDLQTMI RTSPNSLVTI LNNSRSSSSA SGSYGHLSAS AISPALSFTY 351 400 ENSP00000379258/1-1580 SSAPVSLHMH QQILSRQQSL GSAFGHSPPL IHPAPTFPTQ RPIPGIPTVL bmy_05140T0/1-1160 ---------- ---------- ---------- ---------- ---------- BACU012611/1-1031 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003403/1-1580 PSAPVSLHMH QQILSRQQSL GSAFGHSPPL IHPAPTFPTQ RPIPGIPTVL ENSBTAP00000033519/1-1470 PSAPVSLHMH QQILSRQQSL GSAFGHSPPL IHPAPTFPTQ RPIPGIPTVL 401 450 ENSP00000379258/1-1580 NPVQVSSGPS ESSQNKPTSE SAVSSTGDPM HNKRSKIKPD EDLPSPGARG bmy_05140T0/1-1160 -----DDGDG DGDDGDGDGD GNDDDDDD-- ---------- ---------G BACU012611/1-1031 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003403/1-1580 NPVQVTSGPS ESSQNKPTSE SAVTSTGDLV HNKRSKIKAD EDLPSPGPRG ENSBTAP00000033519/1-1470 NPVQVSSGPS ESSQNKPTSE SAVSSTGDLV HNKRSKIKPD EDLPSPGPRG 451 500 ENSP00000379258/1-1580 QQEQPEGTTL VKEEGDKDES KQEPEVIYET NCHWEGCARE FDTQEQLVHH bmy_05140T0/1-1160 DDGDDDGDGD EDEDGDNEDD EKSSTFPF-- ---------Y FSHSFSKLQH BACU012611/1-1031 ---------- ---------- ------IY-- ---------- ---------- ENSTTRP00000003403/1-1580 QQEQPEGTTL VKEEGDKEES KQEPEVIYET NCHWEGCSRE FDTQEQLVHH ENSBTAP00000033519/1-1470 QQEQPEGTTL VKEEGDKDES KQEPEVIYET NCHWEGCSRE FDTQEQLVHH 501 550 ENSP00000379258/1-1580 INNDHIHGEK KEFVCRWLDC SREQKPFKAQ YMLVVHMRRH TGEKPHKCTF bmy_05140T0/1-1160 INNDHIHGEK KEFVCRWLDC SREQKPFKAQ YMLVVHMRRH TGEKPHKCTF BACU012611/1-1031 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003403/1-1580 INNDHIHGEK KEFVCRWLDC SREQKPFKAQ YMLVVHMRRH TGEKPHKCTF ENSBTAP00000033519/1-1470 INNDHIHGEK KEFVCRWLDC SREQKPFKAQ YMLVVHMRRH TGEKPHKCTF 551 600 ENSP00000379258/1-1580 EGCTKAYSRL ENLKTHLRSH TGEKPYVCEH EGCNKAFSNA SDRAKHQNRT bmy_05140T0/1-1160 EGCTKAYSRL ENLKTHLRSH TGEKPYVCEH EGCNKAFSNA SDRAKHQNRT BACU012611/1-1031 ---------- RNVRTQLRRL FLIKALFIEH LLCA------ ---------P ENSTTRP00000003403/1-1580 EGCTKAYSRL ENLKTHLRSH TGEKPYVCEH EGCNKAFSNA SDRAKHQNRT ENSBTAP00000033519/1-1470 EGCTKAYSRL ENLKTHLRSH TGEKPYVCEH EGCNKAFSNA SDRAKHQNRT 601 650 ENSP00000379258/1-1580 HSNEKPYVCK IPGCTKRYTD PSSLRKHVKT VHGPEAHVTK KQRGDIHPRP bmy_05140T0/1-1160 HSNEKPYVCK IPGCTKRYTD PSSLRKHVKT VHGPEAHVTK KQRGDVHPRP BACU012611/1-1031 HHIVKPYVCK IPGCTKRYTD PSSLRKHVKT VHGPEAHVTK KQRGDVHPRP ENSTTRP00000003403/1-1580 HSNEKPYVCK IPGCTKRYTD PSSLRKHVKT VHGPEAHVTK KQRGDVHPRP ENSBTAP00000033519/1-1470 HSNEKPYVCK IPGCTKRYTD PSSLRKHVKT VHGPEAHVTK KQRGDVHPRP 651 700 ENSP00000379258/1-1580 PPPRDSGSHS QSRSPGRPTQ GALGEQQDLS NTTSKREECL QVKTVKAEKP bmy_05140T0/1-1160 PAPRDSGGHS QSRSPGRQTQ GALGEQKDLS NTTSKREECL QVKTVKAEKP BACU012611/1-1031 PAPRDSGGHS QSRSPGRQTQ GALGEQKGLS NTTSKREECL QVKTVKAEKP ENSTTRP00000003403/1-1580 PAPRDSGGHS QSRSPGRQTQ GALGEQKDLS NTTSKREECL QVKTVKAEKP ENSBTAP00000033519/1-1470 PPPRDSGSHS QSRSPGRQTQ GALGEQKDLS NTTSKREECL QVKTVKAEKP 701 750 ENSP00000379258/1-1580 MTSQPSPGGQ SSCSSQQSPI SNYSNSGLEL PLTDGGSIGD LSAIDETPIM bmy_05140T0/1-1160 MTSQPSPGGQ SSCSSQQSPI SNYSNSGLEL PLTDGGGMGD LSAIDETPIM BACU012611/1-1031 MTSQPSPGGQ SSCSSQQSPI SNYSNSGLEL PLTDGGGMGD LSAIDETPIM ENSTTRP00000003403/1-1580 MTSQPSPGGQ SSCSSQQSPI SNYSNSGLEL PVTDGGGMGD LSAIDETPIM ENSBTAP00000033519/1-1470 MTSQPSPGGQ SSCSSQQSPI SNYSNSGLEL PLTDGGGVGD LSAIDETPIM 751 800 ENSP00000379258/1-1580 DSTISTATTA LALQARRNPA GTKWMEHVKL ERLKQVNGMF PRLNPILPPK bmy_05140T0/1-1160 DSTISTATTA LALQARRNPA GTKWMEHVKL ERLKQVNGML PRLHPILPPK BACU012611/1-1031 DSTISTATTA LALQARRNPA GTKWMEHVKL ERLKQVNGML PRLHPILPPK ENSTTRP00000003403/1-1580 DSTISTATTA LALQARRNPA GTKWMEHVKL ERLKQVNGML PRLHPILPPK ENSBTAP00000033519/1-1470 DSTISTATTA LALQARRNPA GTKWMEHVKL ERLKQVNGML PRLNPILPPK 801 850 ENSP00000379258/1-1580 APAVSPLIGN GTQSNNTCSL GGPMTLLPGR SDLSGVDVTM LNMLNRRDSS bmy_05140T0/1-1160 APAVSPLIGN GTQPSTSCSL GGPPSLLPNR SDLSGVDITM LNLLNRRDSS BACU012611/1-1031 APAVSPLIGN GTQPSTSCSL GGPPPLLPNR SDLSGVDITM LNLLNRRDSS ENSTTRP00000003403/1-1580 APAVSPLIGN GTQPSTSCSL GGPPPLLPNR SDLSGVDITM LNLLNRRDSS ENSBTAP00000033519/1-1470 APAVSPLIGN GTQPSTSCSL GGPMPLLPNR SDLSGVDITM LNMLNRRDSS 851 900 ENSP00000379258/1-1580 ASTISSAYLS SRRSSGISPC FSSRRSSEAS QAEGRPQNVS VADSYDPIST bmy_05140T0/1-1160 ASTISSAYLS SRRSSGISPC FSSRRSSEAS QAEGRPQNVS VADSYDPIST BACU012611/1-1031 ASTISSAYLS SRRSSGISPA FSSRRSSEAS QAEGRPQNVS VADSYDPIST ENSTTRP00000003403/1-1580 ASTISSAYLS SRRSSGISPC FSSRRSSEAS QAEGRPQNVS VADSYDPIST ENSBTAP00000033519/1-1470 TSTVSSAYLS SRRSSGISPC FSSRRSSEAS QAEGRPQNVS VADSYDPIST 901 950 ENSP00000379258/1-1580 DASRRSSEAS QSDGLPSLLS LTPAQQYRLK AKYAAATGGP PPTPLPNMER bmy_05140T0/1-1160 DASRRSSEAS QGDGLPSLLS LTPAQQYRLK AKYAAATGGP PPTPLPNMER BACU012611/1-1031 DASRRSSEAS QGDGLPSLLS LTPAQQYRLK AKYAAATGGP PPTPLPNMER ENSTTRP00000003403/1-1580 DASRRSSEAS QGDGLPSLLS LTPAQQYRLK AKYAAATGGP PPTPLPNMER ENSBTAP00000033519/1-1470 DASRRSSEAS QGDGLPSLLS LTPAQQYRLK AKYAAATGGP PPTPLPNMER 951 1000 ENSP00000379258/1-1580 MSLKTRLALL GDALEPGVAL PPVHAPRRCS DGGAHGYGRR HLQPHDAPGH bmy_05140T0/1-1160 MSLKTRMALL GDGREPAGTL PPVHPPRRCS DGGAHGYGRR PLLPQDALGN BACU012611/1-1031 MSLKTRMALL GDGREPAGTL PPVHPPRRCS DGGAHGYGRR PLLPQDALGN ENSTTRP00000003403/1-1580 MSLKTRMALL GDGREPAGTL PPVHPPRRCS DGGAHGYGRR PLLPQDALGN ENSBTAP00000033519/1-1470 MSLKTRMALL GDGREPAGTL PPVHPPRRCS DGGAHGYSRR PLLPQDALGN 1001 1050 ENSP00000379258/1-1580 GVRRASDPVR TGSEGLALPR VPRFSSLSSC NPPAMATSAE KRSLVLQNYT bmy_05140T0/1-1160 GVRRASDPVR TASESLSLPR VQRFNSHNSF NPPVLPPSLE KRNLVLQNYT BACU012611/1-1031 GVRRASDPVR TASESLSLPR VQRFNSLNSF SPPVLPPSLE KRNLVLQNYT ENSTTRP00000003403/1-1580 SVRRASDPVR TASESLSLPR VQRFNSLNSF NPPVLPPSLE KRNLVLQNYT ENSBTAP00000033519/1-1470 GVRRASDPVR TVSESLSLPR VQRFNSLNSF NPPVLPPSLE KRNLVLQNYT 1051 1100 ENSP00000379258/1-1580 RPEGGQSRNF HSSPCPPSIT ENVTLESLTM DADANLNDED FLPDDVVQYL bmy_05140T0/1-1160 RPDGGQSRPF HASPCPPSIT ENVTLESLTM DADVSLNDED LLPDDVVQYL BACU012611/1-1031 RPDGGQSRPF HASPCPPSIT ENVTLESLTM DADVSLNDED LLPDDVVQYL ENSTTRP00000003403/1-1580 RPDGGQSRHF HASPCPPSIS ENVTLESLAM DADVGLNDED LLPDDVVQYL ENSBTAP00000033519/1-1470 RPDGGQARHF HSSPCPPSIT ENVTLESLTM DADVSLNDED LLPDDVVQYL 1101 1150 ENSP00000379258/1-1580 NSQNQAGYEQ HFPSALPDDS KVPH------ GPGDFDAPGL PDSHA----G bmy_05140T0/1-1160 NSQNPVGYEQ HFPGTVSDDS KVPHGPGLGS GPGDFDPLGL PGSHA----S BACU012611/1-1031 NSQNPVGYEQ HFPGTVSDDS KVPHGPGLGS GPGDFDPPGL PGSHA----S ENSTTRP00000003403/1-1580 NSQNPVGYGQ HFPGTVSDDS KVPH------ GPGDFDPLGL PGSHA----S ENSBTAP00000033519/1-1470 NSQNPAGYEQ HFPGTFSDDS KVPH--GLGS GPGDFDPLGL PDSHASHTGS 1151 1200 ENSP00000379258/1-1580 QQFHALEQPC PEGSKTDLPI QWNEVSSGSA DLSSSKLKCG PRPAVPQTRA bmy_05140T0/1-1160 QQYRGLEPPC TDASKSDLPI QWNEVSSGSA DLSSSKLKCG PRSTAQQARA BACU012611/1-1031 QQYRGLEPPC TDAGKPDLPI QWNEVSSGSA DLSSSKLKCG PRSTAQQARA ENSTTRP00000003403/1-1580 QQYRGLEPPC TDAGKSDLPI QWNEVSSGSA DLSSSKLKCG QRSTAQHARA ENSBTAP00000033519/1-1470 QQYRSLEQPC PDASKSDLPI QWNEVSSGSA DLSSSKLKCG QRSMGQQARA 1201 1250 ENSP00000379258/1-1580 FGFCNGMVVH PQNPLRS--G PAGGYQTLGE NSNPYGGPEH LMLHNSPG-- bmy_05140T0/1-1160 FALYSHVGVH PQNPLRSGAG PAGGYPTPGE HGSSFGGPEH LVSHGGGG-G BACU012611/1-1031 FALYSHVGVH PQNPLRSGAG PAGGYPTPGE HGSSFGGPEH LVSHGGGGGG ENSTTRP00000003403/1-1580 FGLYSHVGVH PQNPLRSGAG PTGGYPTPGE HGGSFGGPEH LVSHGGGGGG ENSBTAP00000033519/1-1470 FGSYSHMGVH PQNPLRSGAG PAGGYPTLGE HASSFGGPEH LVSHGGG--- 1251 1300 ENSP00000379258/1-1580 -SGTSGNAFH EQPCKAPQYG NCLNRQPVAP GALDGACGAG IQASKLKSTP bmy_05140T0/1-1160 AAGTNGNAFH EQPYKAQQYG NCLARQPGSP GLLDGACGAG IQAAKLKSIP BACU012611/1-1031 AAGTNGKAFH EQPYKAQQYG NCLARQPGSP GWLDGACGAG MQAAKLQSIP ENSTTRP00000003403/1-1580 AAGTNGNAFH EQPYKAQQYG NCLARQ---P SLLDGACGAG MQAAKLKSIP ENSBTAP00000033519/1-1470 -AGTNGNAFH EPPYKAQQYG NCLNRQPGAP TLLDGACGPG IQAAKLKSIT 1301 1350 ENSP00000379258/1-1580 MQGSGGQLNF GLPVAPNESA GSMVNGMQNQ DPVGQGYLAH QLLGDSMQHP bmy_05140T0/1-1160 MPGSGSQPDF GLSVAPNESA GSTVNGMPSP DPVGQGYLAH QLLSDSMHPQ BACU012611/1-1031 VPGSGSQPDF GLSVAPNESA GSTVNGMPSP DPVGQGYLVH QLLSDSMHPQ ENSTTRP00000003403/1-1580 VQGSGSQPDF GLS-APNESA GSTVNGMPSP DPVGQGYLAH QLLSDGMHPQ ENSBTAP00000033519/1-1470 MQGSGSHLDF GLSVVPNEST GSTVNGIPTP DPTGQGYLAQ QLLGDSTHTQ 1351 1400 ENSP00000379258/1-1580 GAGRPGQQML GQISATSHIN IYQGPESCLP GAHGMGSQPS SLAVVRGYQP bmy_05140T0/1-1160 GAGRPGQHML GHGSATSHIH VYQGPEXGLP GPPSTGIQLS SLAAVRGYQP BACU012611/1-1031 GAGRPGQHVL GHGSATSHIH VYQGPESGLP GPPSTGIQLS SLAAVRGYQP ENSTTRP00000003403/1-1580 GAGRPGQHML GHGSATSHIH VYQGPESGLP GPPSTGIQPS SLAAVRGYQP ENSBTAP00000033519/1-1470 GAGRSGQNLL GQASATSHI- -YQGPESSLP GPPSISVQPP NVAAVRGYQP 1401 1450 ENSP00000379258/1-1580 CASFGGSRRQ AMPRDSLALQ SGQLSDTSQT CRVNGIKMEM KGQPHPLCSN bmy_05140T0/1-1160 CASYGGSRRQ AGPRGXLALQ PGQLSDPSQT CRVNGIKMEM PGQPHQLYSN BACU012611/1-1031 CASYGGGRRQ AGPRGGLALQ PGQLSDPSQT CRVNGIKVEM PGQPHQLYSS ENSTTRP00000003403/1-1580 CASYGGSRRQ AGPRGGLALQ PGQLSDPSQT CRVNGIKMEM PGQPHQLYSN ENSBTAP00000033519/1-1470 CVGYGGSRRQ AGPRGGLALQ PGQFSDPSQT CRVNGIKMEM PGQPHQLCSN 1451 1500 ENSP00000379258/1-1580 LQNYSGQFYD QTVGFSQQDT KAGSFSISDA SCLLQGTSAK NSELLSPGAN bmy_05140T0/1-1160 VQSYSGQFYD QTIGFGQQDM KTGCFSVSEA NCLLQGVSAE NSELLSPGAN BACU012611/1-1031 VQSYSGQFYD QTIGFGQPDV KTGCFSVSEA SCLLQGASAE NSELLSPGAN ENSTTRP00000003403/1-1580 VQSYSGQFYD QTIGFGQQDM KTGSFSVSEA NCLLQGASAE NSELLSPGAN ENSBTAP00000033519/1-1470 VQSYSGQFYD QTVGFGQQDM KTGSFSMSEA NCLLQGAGAE NSELLSPGAN 1501 1550 ENSP00000379258/1-1580 QVTSTVDSLD SHDLEGVQID FDAIIDDGDH SSLMSGALSP SIIQNLSHSS bmy_05140T0/1-1160 QVTSTVDSLD SHDLEGVQID FDAIIDDADH ASL------- -IFAGDTHAS BACU012611/1-1031 QVTSTVDSLD SHDLEGVQID FDAIIDDADH ASLMSGVLSP SIIQNLSHSS ENSTTRP00000003403/1-1580 QVTSTVDSLD SHDLEGVQID FDAIIDDADH ASLMSGALSP SIIQNLSHSS ENSBTAP00000033519/1-1470 QVTSTVDSLD SHDLEGVQID FDAIIDDGDH ASLMSGALSP SIIQNLSHSS 1551 1600 ENSP00000379258/1-1580 SRLTTPRASL PFPALSMSTT NMAIGDMSSL LTSLAEESKF LAVMQ--- bmy_05140T0/1-1160 AQY------- ------LASL SMEISEGWRK GEAEEESVFF QSVLIGLR BACU012611/1-1031 SRLTTPRAAL PLPALSLSTT NMAIGDMSSL LTSLAEESKF LAVMQ--- ENSTTRP00000003403/1-1580 SRLTTPRAAL PLPALSLSTT NMAIGDMSSL LTSLAEESKF LAVMQ--- ENSBTAP00000033519/1-1470 SRLTTPRAAL PFPPLSLSTT NMAIGDMSSL LTSLAEESKF LAVMQ---