KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:43:18 2014 Check: 00 .. Name: ENSP00000376955/1-928 Len: 945 Check: 4939 Weight: 1.00 Name: ENSTTRP00000010233/1-885 Len: 945 Check: 21 Weight: 1.00 Name: ENSBTAP00000033549/1-871 Len: 945 Check: 8371 Weight: 1.00 Name: bmy_16189T0/1-930 Len: 945 Check: 4362 Weight: 1.00 Name: BACU002683/1-735 Len: 945 Check: 8863 Weight: 1.00 // 1 50 ENSP00000376955/1-928 ------MDVG FSRTTVQTLS RSHCKNIKQK ISQWEGRANG ISNPEKWCPK ENSTTRP00000010233/1-885 ---------- ---------- ---------- --------NG KSNPDKCDP- ENSBTAP00000033549/1-871 ------MDVG FSRSAVHTLS RSHCKNIKQK ISQWEGRTNG ISNPDKWHAK bmy_16189T0/1-930 MHPTGNMDVG FSRSAARTLS RSHCKNIKQK ISQWEGRTNG KSNPDKCDPK BACU002683/1-735 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000376955/1-928 DFGVRY-NCH QEIRLKKNPI AERKSKNLDV TSRENVGLDI NENTKSHDQS ENSTTRP00000010233/1-885 -FEVRYNNCN QEILLKRNPV AEGKSKKLDV TNSKNVDQGI NEDAKSHNRS ENSBTAP00000033549/1-871 DFGVRYNNCN QESLLKKTPI AEGKSKKLDV TNTQNVDQGI NEDAKSHNQS bmy_16189T0/1-930 DFGVRYNNCN QEILLKRNPV AEGKSKKLDV TNSQNVDQGI NEDAKSHNQS BACU002683/1-735 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000376955/1-928 ENENKKHEYD DTHFFKNESE SNWVCSRVKE IESCKEDVLD PETSLPPGNF ENSTTRP00000010233/1-885 EDESERREYD DTHFFKNESG SNWVCSRAKQ TESWKE-VLD PETSLPPGNF ENSBTAP00000033549/1-871 EDESEKREYD DTHLFKNESE PNWVCSRVKQ IENWKE-VLD PETSLPPGNF bmy_16189T0/1-930 EDESEKREYD DTHFFKNESE SNWVCSRAKQ IESRKE-VLD PETSLPPGNF BACU002683/1-735 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000376955/1-928 YTSQILWKKI EALPPDKLLN LALEHCDSSE KELNFRVLDS SYGITKSLEN ENSTTRP00000010233/1-885 YTSQILWKKI EALPPDKVLN LALEHCDSSE KELNFRGLDS SYGVTKSLEN ENSBTAP00000033549/1-871 YTSQILWKKI EALSPDKVLN LALEHCGSSE KELNFRVLDS SYGVTKSLEN bmy_16189T0/1-930 YTSQILWKKI EALPPDKVLN LALEHCDSSE KELNFRGLDS SYGVTKSLES BACU002683/1-735 ---------- ---------- ---------- ---------- -----KSLEN 201 250 ENSP00000376955/1-928 IYSEPEGQEC GPSINPLPKP RRTFRYLSES GVTPYKERNC DKKYCENNSC ENSTTRP00000010233/1-885 IYSEPEGQEC GPSINPLPKP RRTFRYLSES GDMPYKERNC DRKYCENNSC ENSBTAP00000033549/1-871 IYSEPEGQEC GPSINPLPKP RRTFRYLSES GPMPYKERNC DRKYCENNSC bmy_16189T0/1-930 IYSEPEGQEC GPSINPLPKP RRTFRYLSES GVMPCKERNC DRKYCENNSC BACU002683/1-735 IYSEPEGQEC GPSINPLPKP RRTFRYLSES GVMPCKERNC DRKYCENNSC 251 300 ENSP00000376955/1-928 AQSSLASSQE PEPKKYGGKI RGRSKRKSFE FEDIQHFRNR NSQTIREELG ENSTTRP00000010233/1-885 TEPSLASSQE PEPKNYGRKI RGRSKRKSFE FEDIQHFRNQ NSRKIREELR ENSBTAP00000033549/1-871 AESSLASSQE PEPKKYGGKI RGRSKRKSFE FEDIQHFRNR NSQKIHEELG bmy_16189T0/1-930 TESSLASSQE PEPKKYGRKI RGRSKRKSFE FEDIQHFRNQ NSRKIHEELR BACU002683/1-735 TESSLASSQE PEPKKYGRKI RGRSKRKSFE FEDIQHFRNQ NSQKIHEELR 301 350 ENSP00000376955/1-928 RNSGSALYYT QSEDNIYEDI IYPTKENPYE DIPVQPLPMW RSPSAWKLPP ENSTTRP00000010233/1-885 RNSGSALYYT QSEDNIYEDI IYPIKENPYE DIPVQPLPMW RSLSTWKLPP ENSBTAP00000033549/1-871 RNSGSALYYT QSEDNIYEDI IYPTKENPYE DIPVQPLPLW RSPSAWKLPP bmy_16189T0/1-930 RNSGSALYYT QSEDNIYEDI IYPTKENPYE DIPVQPLPMW RSPSTWKLPP BACU002683/1-735 RNSGSALCYT QSEDNIYEDI IYPTKENPYE DIPVQPLPMW RSPSTWKLPP 351 400 ENSP00000376955/1-928 AKSAFKAPKL PPKPQFLHRK TMEVKNSQAY LRSKLTKDTT LPVTLTEWKL ENSTTRP00000010233/1-885 PKSAFKAHKL PPKPQLLHRK TMEPKNSQVY LWSKLTKDTT LPVTLTEWKL ENSBTAP00000033549/1-871 PKSAFRT--- ---------- ---------- ---------- ---------- bmy_16189T0/1-930 PKSAFKAPKL PSKPQFLHRK TMELKSSQVY LRSKLTKDTT LPVTLTEWKL BACU002683/1-735 PKSAFKAPKL PSKPQFFHRK TMELKSSQVY LRSKLTRDTT LPVTLTEWKL 401 450 ENSP00000376955/1-928 FRAGEVANTK RKNLPRLVLK IDDIFESKRG KKKVKLHSYT GKELPPTKGE ENSTTRP00000010233/1-885 FRAGEVANRK RKNLPRLVLK IDDIFESKRG KKRVKLHPYT GKDVPPSKGE ENSBTAP00000033549/1-871 ---------- ----PKFVLK IDDIFESKRG KKKVKLHPYT GKDAPPSKGE bmy_16189T0/1-930 FRAGEVANRK RKNLPRLVLK IDDIFESKRG KKRVKP---V GTKVMPNICQ BACU002683/1-735 FRAGEVANRK RKNIPRLVLK IDDIFESKRG KKRVKLHLYT GKDVPPF--- 451 500 ENSP00000376955/1-928 TSGNESDAEY LPKNRHKRLA QLQPSSKRNP HYQTLERDLI ELQEQQLFEL ENSTTRP00000010233/1-885 TCGYESDAEY LPKSRYKRIA QLQQPSKRNP HYQTLERDLI ELQEQQLFEL ENSBTAP00000033549/1-871 PGGYESDAEY LPKSRHKRVA QLQQSSKRNP HYQTLERDLI ELQEQQLFEL bmy_16189T0/1-930 R--------- --VSRYKRIA QLQQSSKRNP HYQTLERDLI EFQEQQLFEL BACU002683/1-735 ---------- --KSRYKCIA QLQQSSKRNP HYQTLERDLI EFQEQQLFEL 501 550 ENSP00000376955/1-928 FVVVSLQKKP SGISYIPQVI QQFPGKDDHG YKQSKDMEER LKVIPKFCFP ENSTTRP00000010233/1-885 FVVVSLQKKP SEISYIPQVI QQFPSKGDHG CKQSRDIEDR LKVIPKFCFP ENSBTAP00000033549/1-871 FVVVSLQKKP SEASYVPQVI QQFPSKGDHG FKQSRDTEER LKVIPKFCFP bmy_16189T0/1-930 FVVVSLQKKP SEISYIPQVI QQFPSTGDHG IKQSRDTEER LKVIPKFCFP BACU002683/1-735 FVVVSLQKKP SEISYTPQII QQFPSKGDHG IKQSRDTEER LKVIPKFCFP 551 600 ENSP00000376955/1-928 DSKDWMPTSE LKSETFSFVL TGEDGSRWFG YCKKLLPVGK GKRLPEVYCM ENSTTRP00000010233/1-885 DSKDWVPTSE LKSETFSFVL TGEDGSRWFG YCKKLLPEGK GKRLPEVYCM ENSBTAP00000033549/1-871 DSKDWVPTSE LKSETFSFVL TGEDGSRWFG YCKKLLPEGK GKRLPEVYCM bmy_16189T0/1-930 DSKDWVPTSE LKSETFSFVL TGEDGSRWFG YCKKLLPEGK GKRLPEVYCM BACU002683/1-735 DSKDWVPTSE LKSETFSFVL TGEDGSRWFG YCKKLLPEGK GKRLPEVYCM 601 650 ENSP00000376955/1-928 VSRLGCFNLF SKILDEVEKR REMSPALVYP FMRSVMEAPF PAPGRTITVK ENSTTRP00000010233/1-885 VSRLGCFNLF SKILDEVEKR REMSPALVYP FMRSVMEAPF PAPGRTITVK ENSBTAP00000033549/1-871 VSRLGCFNLF SKILDEVEKR REMSPALVYP FMRSVMEAPF PAPGRTITVK bmy_16189T0/1-930 VSRLGCFNLF SKILDEVEKR REMSPALVYP FMRSVMEAPF PAPGCTITVK BACU002683/1-735 VSRLGCFNLF SKILDEVEKR REMSPALVYP FMRSVMEAPF PAPGCTITVK 651 700 ENSP00000376955/1-928 SYLPGAGDES IELCRPLDSR LEHVDFKCLF KCLSVCHLIR VCASLLLERR ENSTTRP00000010233/1-885 SYLPGAGDGS IELCRPLDSR LEHVDFECLF KCLSVCHLIR VCASLLLERR ENSBTAP00000033549/1-871 SYLPGAGDGS IELCRPLDSR LEHVDFECLF KCLSVCHLIR VCASLLLERR bmy_16189T0/1-930 SYLPGAGDES IELCRPLDSR LEHVDFECLF KCLSVCHLIR VCASLLLERR BACU002683/1-735 SYLPGAGDES IELCRPLDSR LEHVDFECLF KCLSVCRLIR VCASLLLERR 701 750 ENSP00000376955/1-928 VIFVANSLST LSKCGHAVVA TLYPFTWQHT YIPVLPASMI DIVCSPTPFL ENSTTRP00000010233/1-885 IIFVANSLST LSKCGHAVVA TLYPFTWQHT YIPVLPASMI DIVCSPTPFL ENSBTAP00000033549/1-871 VIFVANSLST LSKCGHAAVA TLYPFTWQHT YIPVLPASMI DIVCSPTPFL bmy_16189T0/1-930 IIFVANSLST LSKCGHAVVA TLYPFTWQHT YIPVLPASMI DIVCSPTPFL BACU002683/1-735 IIFVANSLST LSKCGHAVVA TLYPFTWQHT YIPVLPASMI DIVCSPTPFL 751 800 ENSP00000376955/1-928 IGILSCSLPQ LQDLPIEEVL IVDLCADKFL QEVSDEDEIL PPKLQAALMQ ENSTTRP00000010233/1-885 IGILSCSLPQ LQDLPIEEVL IVDLCADKFL QEVSDEDDIL PPKLQAALIQ ENSBTAP00000033549/1-871 IGILSCSLPQ LQDLPIEEVL IVDLCADKFL QEVSDEDEIL PPKLQAALIQ bmy_16189T0/1-930 IGILSCSLPQ LQDLPIEEVL IVDLCADKFL QEVSDEDEIL PPKLQAALIQ BACU002683/1-735 IGILSCSLPQ LQDLPIEEVL IVDLCADKFL QEVSDEDEIL PPKLQAALIQ 801 850 ENSP00000376955/1-928 ILEERNEILT QEQNF--SQD VTLNSLVSEA FVRFFVELVG HYSLNMTVTE ENSTTRP00000010233/1-885 ILEERNEILA XXXXX--XXX VTLNSLVSEA FVRFFVELVG HYSLSMTVTE ENSBTAP00000033549/1-871 ILEERNEILA QEQNF--SQD VTLNSLVSEA FVRFFVELVG HYSLSMTVTE bmy_16189T0/1-930 ILEERNEILA QEQKFLQAED VTLNSLVSEA FVRFFVELVG HYSLSMTVTE BACU002683/1-735 ILEERNEILA QEQKFLQAED VTLNSLVSEA FVRFFVELVG HYSLSMTVTE 851 900 ENSP00000376955/1-928 RGERVFQREP FRKSHTSRSV RHFLDLFMET QMFAGFIQDR ELRKSGVKGL ENSTTRP00000010233/1-885 HGERVFQREP FRKSHTSRSV RHFLDLFMET QMFAGFIQDR ELRKSGVKGL ENSBTAP00000033549/1-871 RGERVFQREP FRKSHTSRSV RHFLDLFMET QMFAGFIQDR ELRKSGVKGL bmy_16189T0/1-930 HGERVFQREP FRKSHTSRSV RHFLDLFMET QMFAGFIQDR ELRKSGVKGL BACU002683/1-735 HGERVFQREP FRKSHTSRSV RHFLDLFMET QMFAGFIQDR ELRKSGVKGL 901 950 ENSP00000376955/1-928 FEIRAIQYLE TIPESEPSGM NRILRSLG-- --SKMKFLQK K---- ENSTTRP00000010233/1-885 FEIRALQYLE TIPESEPSGV NRILRTLG-- ---------- ----- ENSBTAP00000033549/1-871 FEVRALQYLE TIPESEPSGV NRILRSLG-- --SKMKFLQK K---- bmy_16189T0/1-930 FEVRALQYLE TIPDSEPSGV NRILRSLAEV YQSQLEALRI RDFKL BACU002683/1-735 FEVRALQYLE TIPESEPSGV NRILRSLAEV YQSQLAALRI RDFKL