KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:43:21 2014 Check: 00 .. Name: ENSP00000223357/1-1158 Len: 1228 Check: 8672 Weight: 1.00 Name: ENSBTAP00000033579/1-1170 Len: 1228 Check: 5299 Weight: 1.00 Name: bmy_21761T0/1-1168 Len: 1228 Check: 5401 Weight: 1.00 Name: ENSTTRP00000005693/1-1117 Len: 1228 Check: 1851 Weight: 1.00 Name: BACU019097/1-1105 Len: 1228 Check: 411 Weight: 1.00 // 1 50 ENSP00000223357/1-1158 MAAVRGAPLL SCLLALLALC PGGRPQTVLT DDEIEEFLEG FLSELEPEPR ENSBTAP00000033579/1-1170 MAALLGAPLL GCLLVLLALC PGGRPQTVLT DDEIEEFLEG FLSELESEPR bmy_21761T0/1-1168 MAVLRGAPLL GCLLALLALC PGGRSQTVLT DDEIEEFLEG FLSELESEPR ENSTTRP00000005693/1-1117 --VLRGAP-L GCLLALLALC PGGRPQTVLT DDEIEEFLEG FLSELESEPR BACU019097/1-1105 MAVLRGAPLL GCLLALLALC PGGRPQTVLT DDEIEEFLEG FLSELESEPR 51 100 ENSP00000223357/1-1158 EDDVEAPPPP EPTPRVRKAQ AGGKPGKRPG TAAEVPPEKT KDKGKKGKKD ENSBTAP00000033579/1-1170 EDDVEAPPPP EPTLPARKPQ TGGKPGARPG VAEEVPPGKA KDKGKKGKKD bmy_21761T0/1-1168 EDDVEAPPPP EPTLPVRKAQ TGGKPGVRPG VASEAPPGKA KDKGKKGKKD ENSTTRP00000005693/1-1117 EDDVEAPPPP EPTLPVRKAQ TGGKPGARPG VAEEAPPGKA KDKGKKGKKD BACU019097/1-1105 EDDVEAPPPP EPTLPVRKAQ TGGKPGVRPG VASEAPPGKA KDKGKKGKKD 101 150 ENSP00000223357/1-1158 KGPKVPKESL EGSPRPPKKG KEKP-----P KATKKPKEKP PKATKKP--- ENSBTAP00000033579/1-1170 KSPKATKQPP EGSSRPPKKP KEKPPKEKPP KATKKPKEKP PKATKKPKEK bmy_21761T0/1-1168 KGPKATKQPP EASSRPPKKP KEKPPKEKPP KATKKPKEKP PKATKKP--- ENSTTRP00000005693/1-1117 KGPKATKQPP EVPSRPPKKP KEKP-----P KATKKPKEKP PKATKKP--- BACU019097/1-1105 KGPKATKQPP EASS------ KEKP-----P KATKKPKEKP PKATKKP--- 151 200 ENSP00000223357/1-1158 ---------- --KEKPPKAT KKPKEKPPKA TKKPPSGKRP PILAPSETLE ENSBTAP00000033579/1-1170 QPKEKPPKEK PPKEKPPKAT KKPKEKPPKA TKRPLAGKKL SIPTPSESPQ bmy_21761T0/1-1168 ---------- --KEKPPKAT KKPKEKPPKA TKRPLAGKKA PIPTPSESPK ENSTTRP00000005693/1-1117 ---------- --KEKPPKAT KKPKEKPPKA NKRPLAGKKA PIPTPSESPK BACU019097/1-1105 ---------- --KEKPPKAT KKPKEKPPKA TKRPLAGKKA PIPTPSESPK 201 250 ENSP00000223357/1-1158 WPLPPPPSPG PEELPQEGGA PLSNNWQNPG EETHVEAREH QPEP------ ENSBTAP00000033579/1-1170 WPLPPLLSPD HEELPQEGGG PLPDPWGGPG EETDV---EH QPEP------ bmy_21761T0/1-1168 WPLPPLTSPG LEELPQEGDG PLPDPWQGPA GETDV---ER QPGEWAPATW ENSTTRP00000005693/1-1117 WPLPPVASPG LEELPQEGDG PLPDPWQGPA GETDV---ER QPEP------ BACU019097/1-1105 WPLPPLTSPG LEELPQEGDG PLPDPWQGPA GETDV---ER QPEP------ 251 300 ENSP00000223357/1-1158 EEETEQPTL- ---------- ---------- DYNDQIERED YEDFEYIRRQ ENSBTAP00000033579/1-1170 EEETEQPTL- ---------- ---------- DYNDQIERED YEDFEYIRRQ bmy_21761T0/1-1168 PRGTNRPGLL GLQGGPGWRR RGASSMRRPQ ALSLRAGGGD GAAHAGLQRP ENSTTRP00000005693/1-1117 EEETEQPTL- ---------- ---------- DYNDQIERED YEDFEYIRRQ BACU019097/1-1105 EEETEQPTL- ---------- ---------- DYNDQIERED YEDFEYILPQ 301 350 ENSP00000223357/1-1158 KQPRPPPSRR RRPERVWPEP PEEKAPAP-- ---APEERIE PPV-KPLLPP ENSBTAP00000033579/1-1170 KQPRPPPS-R RRPERPWPER PEEKAEPPGR GFEAPEEKIE PPPLKPLPPP bmy_21761T0/1-1168 DRAGGLRG-L RRPEKLWPAR PEEKAEPPGP GFEAPEEKIE PPP-KPLP-- ENSTTRP00000005693/1-1117 KQPRPPPS-R RRPERLWPER PEEKA----P G-QAPEERIE PPL-KPLP-- BACU019097/1-1105 KQPRPPPS-R RRPEKLWPER PEEKAEPPGP GFEAPEERIE PPP-KPLP-- 351 400 ENSP00000223357/1-1158 LPPDYGDGYV IPNYDDMDYY FGPPPPQKPD AERQTDEEKE ELKKPKKEDS ENSBTAP00000033579/1-1170 LLPDYEDGYV IPNYDDMDYY FRPPKPQKPD TGLETDEEKE ELKKPKKEGS bmy_21761T0/1-1168 --PNYGGGYV IPDYDDMDYY FRPPRPQKPD PGPETDEEKE ELKKPKKEGS ENSTTRP00000005693/1-1117 --PNYGDGYV IPNYDDXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU019097/1-1105 --PNYGEGYV IPDYDDSECL --GPRPSASQ GRAACTSSLV AVTWPPSSDF 401 450 ENSP00000223357/1-1158 SPKEET--DK WAVEKGKDHK EPRKGE-ELE EEWTPTEKVK CPPIGMESHR ENSBTAP00000033579/1-1170 SPKEEETDDK WTVEKGKDPK GPRKGE-ESE EEWAPVEKIS CRXIGMESHR bmy_21761T0/1-1168 RPKEET-DDK WTVEKGKDHR GPRKGE-ELE EEWAPAEKIK CPPIGMESHR ENSTTRP00000005693/1-1117 XXXXXX--XX XXXXXXXXXX XPRKGE---L EEWAPAEQLK CPPIGMESHR BACU019097/1-1105 PPQAGS---S WVPTSLFPPI ALSSGLFFLS PTWGAMSPE- CPPIGMESHR 451 500 ENSP00000223357/1-1158 IEDNQIRASS MLRHGLGAQR GRLNMQTGAT EDDYYDGAWC AEDDARTQWI ENSBTAP00000033579/1-1170 IEDNQIRASS MLRHGLGAQR GRLNMQAGDT EDDYYDGAWC AEDDSQTQWI bmy_21761T0/1-1168 IEDNQIRASS MLRHGLGAQR GRLNMQAGDT EDDYYDGAWC AEDDSQTQWI ENSTTRP00000005693/1-1117 IEDNQIRSSS MLRHGLGAQR GRLNMQAGDT EDDYYDGAWC AEDDSQTQWI BACU019097/1-1105 IEDNQIRASS MLRHGLGAQR GRLNMQAGDT EDDYYDGAWC AEDDSQTQWI 501 550 ENSP00000223357/1-1158 EVDTRRTTRF TGVITQGRDS SIHDDFVTTF FVGFSNDSQT WVMYTNGYEE ENSBTAP00000033579/1-1170 EVDTRRTTKF TGVITQGRDS SIHDDFVTSF FVGFSNDSQT WVMYTNGYEE bmy_21761T0/1-1168 EVDTRRTTKF TGVITQGRDS SIHDDFVTSF FVGFSNDSQT WVMYTNGYEE ENSTTRP00000005693/1-1117 EVDTRRTTKF TGVITQGRDS SIHDDFVTSF FVGFSNDSQT WVMYTNGYEE BACU019097/1-1105 EVDTRRTTKF TGVITQGRDS SIHDDFVTSF FVGFSNDSQT WVMYTNGYEE 551 600 ENSP00000223357/1-1158 MTFHGNVDKD TPVLSELPEP VVARFIRIYP LTWNGSLCMR LEVLGCSVAP ENSBTAP00000033579/1-1170 MTFHGNVDKD TPVLSELPEP VVARFIRIYP LTWNGSLCMR LEVLGCPVSP bmy_21761T0/1-1168 MTFHGNVDKD TPVLSELPEP VVARFIRIYP LTWNGSLCMR LEVLGCPVSP ENSTTRP00000005693/1-1117 MTFRGNVDKD TPVLSELPEP VVARFIRIYP LTWNGSLCMR LEVLGCPMSP BACU019097/1-1105 MTFHGNVDKD TPVLSELPEP VVARFIRIYP LTWNGSLCMR LEVLGCPVSP 601 650 ENSP00000223357/1-1158 VYSYYAQNEV VATDDLDFRH HSYKDMRQLM KVVNEECPTI TRTYSLGKSS ENSBTAP00000033579/1-1170 VHSYYAQNEV VTTDDLDFRH HNYKDMRQLM KVVNEQCPTI TRTYSLGKSS bmy_21761T0/1-1168 VHSYYAQNEV VTTDDLDFRH HSYKDMRQLM KVVNEQCPSI TRTYSLGKSS ENSTTRP00000005693/1-1117 VHSYYAQNEV LTTDDLDFRH HSYKDMRQLM KVVNEQCPTI TRTYSLGKSS BACU019097/1-1105 VHSYYAQNEV VTTDDLDFRH HSYKDMRQLM KVVNEQCPTI TRTYSLGKSS 651 700 ENSP00000223357/1-1158 RGLKIYAMEI SDNPGEHELG EPEFRYTAGI HGNEVLGREL LLLLMQYLCR ENSBTAP00000033579/1-1170 RGLKIYAMEI SDNPGDHELG EPEFRYTAGI HGNEVLGREL LLLLMQYLCR bmy_21761T0/1-1168 RGLKIYAMEI SDNPGDHELG EPEFRYTAGI HGNEVLGREL LLLLMQYLCR ENSTTRP00000005693/1-1117 RGLKIYAMEI SDNPGDHELG EPEFRYTAGI HGNEVLGREL LLLLMQYLCR BACU019097/1-1105 RGLKIYAMEI SDNPGDHELG EPEFRYTAGI HGNEVLGREL LLLLMQYLCR 701 750 ENSP00000223357/1-1158 EYRDGNPRVR SLVQDTRIHL VPSLNPDGYE VAAQMGSEFG NWALGLWTEE ENSBTAP00000033579/1-1170 EYRDGNPRVR SLVQDTRIHL VPSLNPDGYE VAAQMGSEFG NWALGLWTEE bmy_21761T0/1-1168 EYRDGNPRVR SLVHDTRIHL VPSLNPDGYE VAAQMGSEFG NWALGLWTEE ENSTTRP00000005693/1-1117 EYRDGNPRVR SLVQDTRIHL VPSLNPDGYE VAAQTGSEFG NWALGLWTEE BACU019097/1-1105 EYRDGNPRVR SLVHDTRIHL VPSLNPDGYE VAAQMGSEFG NWALGLWTEE 751 800 ENSP00000223357/1-1158 GFDIFEDFPD LNSVLWGAEE RKWVPYRVPN NNLPIPERYL SPDATVSTEV ENSBTAP00000033579/1-1170 GFDIYEDFPD LNSVLWGAEE RKWVPYRVPN NNLPIPERYL SPDATVSTEV bmy_21761T0/1-1168 GFDIYEDFPD LNSVLWGAEE RKWVPYRVPN NNLPIPERYL SPDATVSTEV ENSTTRP00000005693/1-1117 GFDIYEDFPD LNSVLWGAEE RKWVPYRVPN NNLPIPEHYL SPDATVSTEV BACU019097/1-1105 GFDIYEDFPD LNSVLWGAEE RKWVPYRVPN NNLPIPERYL SPDATVSTEV 801 850 ENSP00000223357/1-1158 RAIIAWMEKN PFVLGANLNG GERLVSYPYD MARTPTQEQL LAAAMAAARG ENSBTAP00000033579/1-1170 RAIIAWMEKN PFVLGANLNG GERLVSYPYD MARTPSQEQL LAAAMAAARG bmy_21761T0/1-1168 RAIIAWMEKN PFVLGANLNG GERLVSYPYD MARTPSQEQL LAAAMAAARG ENSTTRP00000005693/1-1117 RAIIAWMEKN PFVLGANLNG GERLVSYPYD MARTPSQEQL LAAAMAAARG BACU019097/1-1105 RAIIAWMEKN PFVLGANLNG GERLVSYPYD MARTPSQEQL LAAAMAAARG 851 900 ENSP00000223357/1-1158 EDEDEVSEAQ ETPDHAIFRW LAISFASAHL TLTEPYRGGC QAQDYTGGMG ENSBTAP00000033579/1-1170 EDEEEVSEAQ ETPDHAIFRW LAISFASTHL TMTEPYRGGC QAQDYTGGMG bmy_21761T0/1-1168 EDEEEASEAQ ETPDHAIFRW LAISFASTHL TMTEPYRGGC QAQDYTGGMG ENSTTRP00000005693/1-1117 EDEEEASEAQ ETPDHAIFRW LSISFASTHL TMTEPYRGGC QAQDYTGGMG BACU019097/1-1105 EDEEEASEAQ ETPDHAIFRW LAISFASTHL TMTEPYRGGC QAQDYTGGMG 901 950 ENSP00000223357/1-1158 IVNGAKWNPR TGTINDFSYL HTNCLELSFY LGCDKFPHES ELPREWENNK ENSBTAP00000033579/1-1170 IVNGAKWKPR SGTINDFSYL HTNCLELSIF LGCDKFPHES ELPREWENNK bmy_21761T0/1-1168 IVNGAKWKPR SGTINDFSYL HTNCLELSIY LGCDKFPHES ELPREWENNK ENSTTRP00000005693/1-1117 IVNGAKWKPR SGTINDFSYL HTNCLELSIY LGCDKFPHES ELPREWENNK BACU019097/1-1105 IVNGAKWKPR SGTVNDFSYL HTNCLELSIY LGCDKFPHES ELPREWENNK 951 1000 ENSP00000223357/1-1158 EALLTFMEQV HRGIKGVVTD EQGIPIANAT ISVSGINHGV KTASGGDYWR ENSBTAP00000033579/1-1170 EALLTFMEQV HRGIKGVVTD EQGIPIANAT ISVSGINHGV KTASGGDYWR bmy_21761T0/1-1168 EALLTFMEQV HRGIKGVVTD EQGIPIANAT ISVSGINHGV KTASGGDYWR ENSTTRP00000005693/1-1117 EALLTFMEQV HRGIKGVVTD EQGIPIANAT ISVSGINHGV KTASGGDYWR BACU019097/1-1105 EALLTFMEQV HRGIKGVVTD EQGIPIANAT ISVSGINHGV KTASGGDYWR 1001 1050 ENSP00000223357/1-1158 ILNPGEYRVT AHAEGYTPSA KTCNVDYDIG ATQCNFILAR SNWKRIREIM ENSBTAP00000033579/1-1170 ILNPGEYRVT AHAEGYTPSS KTCNVDYDIG ATQCNFILAR SNWKRIREIM bmy_21761T0/1-1168 ILNPGEYRVT AHAEGYTPSS KTCNVDYDIG ATQCNFILAR SNWKRIREIM ENSTTRP00000005693/1-1117 ILNPGEYRVT AHAEGYTPSS KTCNVDYDIG ATQCNFILAR SNWKRIREIM BACU019097/1-1105 ILNPGEYRVT AHAEGYTPSP KTCNVDYDIG ATQCNFILAR SNWKRIREIM 1051 1100 ENSP00000223357/1-1158 AMNGNRPIPH IDPSRPMTPQ QRRLQQRRLQ HRLRLRAQMR LRRLNATTTL ENSBTAP00000033579/1-1170 AMNGNRPIPR IDPSRPMTPQ QRRMQRRRLQ YRLRMREQMR LRRLNATTSP bmy_21761T0/1-1168 AMNGNRPIPR IDPSRPMTPQ QRRMQRRRLQ YRLRMREQMR LRRLNATTSP ENSTTRP00000005693/1-1117 AMNGNRPIPH IDPSRPMTPQ QRRMQRRRLQ YRLRMREQMR LSRLNATANP BACU019097/1-1105 AMNGNRPIPR IDPSRPMTPQ QRRMQRRRLQ YRLRMREQMR LRRLNATT-- 1101 1150 ENSP00000223357/1-1158 G--------P HTVPPTLPPA PATTLSTTIE PWGLIPPTTA GWEES----- ENSBTAP00000033579/1-1170 ATTPTSPPPT PTLLPTADLA PSPAPSSTLG PWQFLPETTV NWEESETETE bmy_21761T0/1-1168 ATVPTSPPTP PTLLPTPSFA PSPAPSSTLG PWHFPPETTA DWEES----- ENSTTRP00000005693/1-1117 G--------P HVVLPTPSLA PSPAPSSTLG PWHFPPETTA GWEES----- BACU019097/1-1105 ---------- ---------S PATVPTSTLG PWHFPPETTA DWEES----- 1151 1200 ENSP00000223357/1-1158 -ETETYTEVV TEFGTEVEPE FGTKVEPEFE TQLEPEFETQ LEPEFEEEEE ENSBTAP00000033579/1-1170 TETETYTEVV TEFGTELGP- ---------- ---------- -----EEEEG bmy_21761T0/1-1168 -ETETYTEVV TEFGTELEP- ---------- ---------- -----EEE-- ENSTTRP00000005693/1-1117 -ETETYTEVV TEFGTELAP- ---------- ---------- -----EEG-- BACU019097/1-1105 -ETETYTEVV TEFGTELEP- ---------- ---------- -----EEG-- 1201 1250 ENSP00000223357/1-1158 EEKEEEIATG QAFPFTTVET YTVNFGDF ENSBTAP00000033579/1-1170 EEGEGEMVTG PDFPFTTVET YTVNFGDF bmy_21761T0/1-1168 EEEEREMVTG QEIPFTTVET YTVNFGDF ENSTTRP00000005693/1-1117 EEEERKMVTG QEIPFTTVET YTVNFGDF BACU019097/1-1105 EEEEREMVTG QEIPFTTVET YTVNFGDF