KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:43:22 2014 Check: 00 .. Name: bmy_11929T0/1-469 Len: 663 Check: 1099 Weight: 1.00 Name: ENSP00000358802/1-635 Len: 663 Check: 5026 Weight: 1.00 Name: BACU002727/1-452 Len: 663 Check: 3762 Weight: 1.00 Name: ENSTTRP00000001235/1-620 Len: 663 Check: 9899 Weight: 1.00 Name: ENSBTAP00000033586/1-623 Len: 663 Check: 2833 Weight: 1.00 // 1 50 bmy_11929T0/1-469 ---------- ---------M SEHC------ ---------- ---------- ENSP00000358802/1-635 MISSVCVSSY RGRKSGNKPP SKTCLKEEMA KGEASEKIII NVGGTRHETY BACU002727/1-452 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001235/1-620 MISSVCVSSY RGRKSGNKPP SKTCLKEEMA KGEASEKIII NVGGTRHETY ENSBTAP00000033586/1-623 MISSVCVSSY RGRKSGNKPP SKTCLKEEMA KGEASEKIII NVGGTRHETY 51 100 bmy_11929T0/1-469 ---------- ---------- ---------- ------RNSG GCSLM----- ENSP00000358802/1-635 RSTLRTLPGT RLAWLADPDG GGRPETDGGG VGSSGSSGGG GCEFFFDRHP BACU002727/1-452 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001235/1-620 RSTLRTLPGT RLAWLADPDG GGRPASDGGG ---AGSSGGG GCEFFFDRHP ENSBTAP00000033586/1-623 RSTLRTLPGT RLAWLADPDG GGRPESDGGG ---AGSSCGG GCEFFFDRHP 101 150 bmy_11929T0/1-469 ---------- QEGGVVC--- ---------- THWA------ --CC------ ENSP00000358802/1-635 GVFAYVLNYY RTGKLHCPAD VCGPLFEEEL TFWGIDETDV EPCCWMTYRQ BACU002727/1-452 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001235/1-620 GVFAYVLNYY RTGKLHCPAD VCGPLFEEEL TFWGIDETDV EPCCWMTYRQ ENSBTAP00000033586/1-623 GVFAYVLNYY RTGKLHCPAD VCGPLFEEEL TFWGIDETDV EPCCWMTYRQ 151 200 bmy_11929T0/1-469 ---------- ---------- ---------- ---------- ---------- ENSP00000358802/1-635 HRDAEEALDI FESPDGGGSG AGPSDEAGDD ERELALQRLG PHEGGAGHGA BACU002727/1-452 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001235/1-620 HRDAEEALDI FESPDGGGGG AGPGDEAGDD ERELALQRLG PHEGGAGPGA ENSBTAP00000033586/1-623 HRDAEEALDI FESPDGGGGG AGPGDEAGDD ERELALQRLG PHEGGAGPGA 201 250 bmy_11929T0/1-469 --------RR SPWGRVEE-- GTLALLVVAF ASLFFILVSI TTFCLETHEA ENSP00000358802/1-635 GSGGCRGWQP RMWALFEDPY SSRAARVVAF ASLFFILVSI TTFCLETHEA BACU002727/1-452 ---------- -MWALFEDPY SSRAARVVAF ASLFFILVSI TTFCLETHEA ENSTTRP00000001235/1-620 GSGGCRGWQP RMWALFEDPY SSRAARVVAF ASLFFILVSI TTFCLETHEA ENSBTAP00000033586/1-623 GPGGCRGWQP RMWALFEDPY SSRAARVVAF ASLFFILVSI TTFCLETHEA 251 300 bmy_11929T0/1-469 FNIDRNVTEI HRVGNTTSVR FRREVETEPI LTYIEGVCVL WFTLEFLVRI ENSP00000358802/1-635 FNIDRNVTEI LRVGNITSVH FRREVETEPI LTYIEGVCVL WFTLEFLVRI BACU002727/1-452 FNIDRNVTEI HRVGNTTSVR FRREVETEPI LTYIEGVCVL WFTLEFLVRI ENSTTRP00000001235/1-620 FNIDRNVTEI HRVGNTTSVR FRREVETEPI LTYIEGVCVL WFTLEFLVRI ENSBTAP00000033586/1-623 FNIDRNVTEI HRVGNTTSVR FRREVETEPI LTYIEGVCVL WFTLEFLVRI 301 350 bmy_11929T0/1-469 VCCPDTLDFV KNLLNIIDFV AILPFYLEVG LSGLSSKAAR DVLGFLRVVR ENSP00000358802/1-635 VCCPDTLDFV KNLLNIIDFV AILPFYLEVG LSGLSSKAAR DVLGFLRVVR BACU002727/1-452 VCCPDTMDFV KNLLNIIDFV AILPFYLEVG LSGLSSKAAR DVLGFLRVVR ENSTTRP00000001235/1-620 VCCPDTLDFV KNLLNIIDFV AILPFYLEVG LSGLSSKAAR DVLGFLRVVR ENSBTAP00000033586/1-623 VCCPDTLDFV KNLLNIIDFV AILPFYLEVG LSGLSSKAAR DVLGFLRVVR 351 400 bmy_11929T0/1-469 FVRILRIFKL TRHFVGLRVL GHTLRASTNE FLLLIIFLAL GVLIFATMIY ENSP00000358802/1-635 FVRILRIFKL TRHFVGLRVL GHTLRASTNE FLLLIIFLAL GVLIFATMIY BACU002727/1-452 FVRILRIFKL TRHFVGLRVL GHTLRASTNE FLLLIIFLAL GVLIFATMIY ENSTTRP00000001235/1-620 FVRILRIFKL TRHFVGLRVL GHTLRASTNE FLLLIIFLAL GVLIFATMIY ENSBTAP00000033586/1-623 FVRILRIFKL TRHFVGLRVL GHTLRASTNE FLLLIIFLAL GVLIFATMIY 401 450 bmy_11929T0/1-469 YAERIGARPS DPRGNDHTDF KNIPIGFWWA VVTMTTLGYG DMYPKTWSGM ENSP00000358802/1-635 YAERIGARPS DPRGNDHTDF KNIPIGFWWA VVTMTTLGYG DMYPKTWSGM BACU002727/1-452 YAERIGARPS DPRGNDHTDF KNIPIGFWWA VVTMTTLGYG DMYPKTWSGM ENSTTRP00000001235/1-620 YAERIGARPS DPRGNDHTDF KNIPIGFWWA VVTMTTLGYG DMYPKTWSGM ENSBTAP00000033586/1-623 YAERIGARPS DPRGNDHTDF KNIPIGFWWA VVTMTTLGYG DMYPKTWSGM 451 500 bmy_11929T0/1-469 LVGALCALAG VLTIAMPVPV IVNNFGMYYS LAMAKQKLPK KRKKHVPRPP ENSP00000358802/1-635 LVGALCALAG VLTIAMPVPV IVNNFGMYYS LAMAKQKLPK KRKKHVPRPA BACU002727/1-452 LVGALCALAG VLTIAMPVPV IVNNFGMYYS LAMAKQKLPK KRKKHVPRPP ENSTTRP00000001235/1-620 LVGALCALAG VLTIAMPVPV IVNNFGMYYS LAMAKQKLPK KRKKHVPRPP ENSBTAP00000033586/1-623 LVGALCALAG VLTIAMPVPV IVNNFGMYYS LAMAKQKLPK KRKKHVPRPP 501 550 bmy_11929T0/1-469 QLESPIYCKS QETSPRDSTY SDASPPAPEE GVVERKRADS KQNGDASAVL ENSP00000358802/1-635 QLESPMYCKS EETSPRDSTC SDTSPPAREE GMIERKRADS KQNGDANAVL BACU002727/1-452 QLESPIYCKS QETSPRDSTY SDASPPAPEE GVVERKRADS KQNGDASAVL ENSTTRP00000001235/1-620 QLESPIYCKS QETSPRDSTY SDASPPAPEE GVVERKRADS KQNGDASAVL ENSBTAP00000033586/1-623 QLESPIYCKS QETSPRDSTY SDASPPAPEE GVVERKRADS KQNGDANAVL 551 600 bmy_11929T0/1-469 SDEEGAGLTQ PLASARTPEE RRALRRSGTR DRNKKAAACF LLSAGDFACA ENSP00000358802/1-635 SDEEGAGLTQ PLASSPTPEE RRALRRSTTR DRNKKAAACF LLSTGDYACA BACU002727/1-452 SDEEGAGLTQ PLASARTPEE RRALRRSGTR DRNKKAAACF LLSAGDFACA ENSTTRP00000001235/1-620 SDEEGAGLTQ PLASARTPEE RRALRRSGTR DRNKKAAACF LLSAGDFACA ENSBTAP00000033586/1-623 SDEEGAGLTQ PLASAPTPEE RRALRRSGTR DRNKKAAACF LLSAGDYACA 601 650 bmy_11929T0/1-469 DGSVRKG--- -M--APQAGQ GGSPHGAESP QCPPWSLRSP PPL-----RP ENSP00000358802/1-635 DGSVRKG--- -TFVLRDLPL QHSPEAACPP TAGTLFLPH- ---------- BACU002727/1-452 DGSVRKGGIF SSLKLHQFYV GQGPGDAEVV VMTGWMVADE LRLTRGWGHN ENSTTRP00000001235/1-620 DGSVRKG--- -TVVLPD--- ---------P AAGTLFLPD- ---------- ENSBTAP00000033586/1-623 DGSVRKE--- ---------T CQDALSSNYA QAEVLTLS-- ---------- 651 700 bmy_11929T0/1-469 WTPSPLPRMR PRF ENSP00000358802/1-635 ---------- --- BACU002727/1-452 WDHLGLGSEW SWA ENSTTRP00000001235/1-620 ---------- --- ENSBTAP00000033586/1-623 ---------- ---