KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:43:23 2014 Check: 00 .. Name: bmy_06815T0/1-424 Len: 670 Check: 6304 Weight: 1.00 Name: ENSP00000261233/1-596 Len: 670 Check: 5296 Weight: 1.00 Name: ENSBTAP00000033611/1-517 Len: 670 Check: 4063 Weight: 1.00 Name: BACU008198/1-515 Len: 670 Check: 2125 Weight: 1.00 Name: ENSTTRP00000008561/1-597 Len: 670 Check: 7675 Weight: 1.00 // 1 50 bmy_06815T0/1-424 ---------- ---------- ---------- ---------- ---------- ENSP00000261233/1-596 MAGNCGARGA LSAHTLLFDL PPALLGELCA VLDSCDGALG WRGLAERLSS ENSBTAP00000033611/1-517 ---------- ---------- ---------- ---------- ---------- BACU008198/1-515 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008561/1-597 MAGSRGARGA LSAHTLLFDM PPALLGEFCA VLDSCDGALG WRGLAERLSS 51 100 bmy_06815T0/1-424 ---------- ---------- ---------- ---------- ---MHVRRTQ ENSP00000261233/1-596 SWLDVRHIEK YVDQGKSGTR ELLWSWAQKN KTIGDLLQVL QEMGHRRAIH ENSBTAP00000033611/1-517 ---------- ---------- ---------- ---------- --MGHHRAIH BACU008198/1-515 ---------- ---------- ---------- ---------- --MGHHRAIH ENSTTRP00000008561/1-597 SWLDVRHIEK YVDQGKSGTR ELLWSWAQKN KTIGDLLQIL QEMGHHRAIH 101 150 bmy_06815T0/1-424 GKLLWLTLVS PVDKA----- ---------S ALSTNSIYVP -VNLKCLLFL ENSP00000261233/1-596 LITNYGAVLS PSEKSYQEGG FPNILFKETA NVTVDNVLIP EHNEKGILLK ENSBTAP00000033611/1-517 LIANYGATLN PIEQSHREKE FPNMLQKETA NVTVDNVLIP ERNEKGILLK BACU008198/1-515 LIATYGAALN PSEPSHQGKG FPIMLSKETA SVTVDNVLIP EHDEKGILFK ENSTTRP00000008561/1-597 LIATYGAALN PSEQSHQGKG FPIMLSKETA SVTVDNVLIP EHNEKGILFK 151 200 bmy_06815T0/1-424 GQV------- --------FV LGFIQHLDLY ---------- ---FKKNEKM ENSP00000261233/1-596 SSISFQNIIE GTRNFHKDFL IGEGEIFEVY RVEIQNLTYA VKLFKQEKKM ENSBTAP00000033611/1-517 SSISFHSIVE GTKNFHKDFL IGEGEIFEVY RVEIQNRTYA IKLFKQGGKM BACU008198/1-515 SSISFHNIIE GTKNFHKDFL IGEGEIFEVY RVEIQNRTYA IKLFKQ---- ENSTTRP00000008561/1-597 SSISFHNVIE GTRNFHKDFL IGEGEIFEVY RVEIQNRTYA IKLFKQGKTM 201 250 bmy_06815T0/1-424 SFKK------ ---------- ---------- FMENN----I WLYL------ ENSP00000261233/1-596 QCKKHWKRFL SELEVLLLFH HPNILELAAY FTETEKFCLI YPYMRNGTLF ENSBTAP00000033611/1-517 QCKKQWKRFL SELEVLLLFR HPNILELAAY FTESEKFCLV YPYMRNGSLF BACU008198/1-515 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008561/1-597 QCKKQWKSFL SELEVLLLFQ HPNILELAAY FTESEKFCLV YPYMRNGSLF 251 300 bmy_06815T0/1-424 ELIRYNGELV LFS------- --------KY LYDVFVLFAL DHNFS----- ENSP00000261233/1-596 DRLQCVGDTA PLPWHIRIGI LIGISKAIHY LHNVQPCSVI CGSISS---- ENSBTAP00000033611/1-517 DRLQCVGDTA PLSWHIRIGV LIGTSKAIQY LHNTELCSVI CGSISS---- BACU008198/1-515 ------GDTA PLSWHIRISI LIGTTKAVQY LHNTEPCSVI CGSISSRSWS ENSTTRP00000008561/1-597 DRLQCVGDTA PLSWHIRISI LIGTTKAVQY LHNTEPCSVI CGSISS---- 301 350 bmy_06815T0/1-424 ---------- ---------- ---------- ---------- ---------- ENSP00000261233/1-596 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000033611/1-517 ---------- ---------- ---------- ---------- ---------- BACU008198/1-515 LRECQIEECR LYSRNLEKGG LLEFRAVEWK FHGGSESSCT EDLDDSKWEG ENSTTRP00000008561/1-597 ---------- ---------- ---------- ---------- ---------- 351 400 bmy_06815T0/1-424 ----ANILLD DQFQPKLTDF AMAHIRPHLE PQSSVISMTS SSSKHLWYMP ENSP00000261233/1-596 ----ANILLD DQFQPKLTDF AMAHFRSHLE HQSCTINMTS SSSKHLWYMP ENSBTAP00000033611/1-517 ----ANILLD DQFQPKLTDF AMAHFRPHLE PQSSAISMTS SSSKHVWYMP BACU008198/1-515 VLCTANILLD DQFQPKLTDF ALAHIRPHLE PQSSVISMTS NSSKHLWYMP ENSTTRP00000008561/1-597 ----ANILLD DQFQPKLTDF AMAHIRPHLE PQSSVLSMAS SSSKHLWYLP 401 450 bmy_06815T0/1-424 EEYIRQGKLS VKTDVYSFGI VIMEVLTGCK VVLDEPKHIQ LRDLLIELLE ENSP00000261233/1-596 EEYIRQGKLS IKTDVYSFGI VIMEVLTGCR VVLDDPKHIQ LRDLLRELME ENSBTAP00000033611/1-517 EEYIRQGKLS IKTDIYSFGI VIMEVLTGCK VVLDEPKHIQ LRDLLIELME BACU008198/1-515 EEYIRQGKLS VKTDVYSFGI VIMEVLTGCK VVLDEPKHIQ LRDLLIELLE ENSTTRP00000008561/1-597 EEYIRQGRLS VKTDVYSFGI VIMEVLTGCK VVLDEPKHIQ LRDLLIELLE 451 500 bmy_06815T0/1-424 KRGLDSCISF LDKKVHPCPR NFSAKLFSLA GQCAATRAKL RPSMDEVLTV ENSP00000261233/1-596 KRGLDSCLSF LDKKVPPCPR NFSAKLFCLA GRCAATRAKL RPSMDEVLNT ENSBTAP00000033611/1-517 KRGLDSCISF LDKKVPPCPQ NFSAKLFSLA GRCAATRAKL RPSMDEVLNI BACU008198/1-515 KRGLDSCISF LDKKVHPCPR NFSAKLFSLA GQCAATRAKL RPSMDEVLTV ENSTTRP00000008561/1-597 KRGLDSCISF LDKKVHPCPR NFSAKLFSLA GQCAATRAKL RPSMDEVLTV 501 550 bmy_06815T0/1-424 LESTQASLYF AEDPPTSLKS FRSPSPLFFD NVPSIPVEDD ENQNNPSLPH ENSP00000261233/1-596 LESTQASLYF AEDPPTSLKS FRCPSPLFLE NVPSIPVEDD ESQNNNLLPS ENSBTAP00000033611/1-517 LESTQASLYF AEDPPTSLKS FRSPSPLFFD NVPSIPVEDD ENQNNPSPPH BACU008198/1-515 LESTQASLYF AEDPPTSLKS FRSPSPLFFD NVPSIPVEDD ENQNNPSLPH ENSTTRP00000008561/1-597 LESTQASLYF AEDPPTSLKS FRSPSPLFFD NVPSIPVEDD ENQNNPSLPH 551 600 bmy_06815T0/1-424 DKGWRKGRTT QKTPFECSQS EVTFLGFDRK TGSGRNEDTC NVPSSPCEES ENSP00000261233/1-596 DEGLRIDRMT QKTPFECSQS EVMFLSLDKK PESKRNEEAC NMPSSSCEES ENSBTAP00000033611/1-517 DQSLRKDRMT QKTPFECSQS EVTFLGFDKK TGSRGNEDSS SRSGSPCEES BACU008198/1-515 DKGWRKGRTT QKTPFECSQS EVTFLGFDRK TGSGRNEDIC NVPSSPCEES ENSTTRP00000008561/1-597 DKGWRKGRTT QKTPFECSQS EVTFLGFDRK TGSGRNEDTS NVPSSACEES 601 650 bmy_06815T0/1-424 WSPKHAAPSQ DLRASGVNXD PSAEVPGHSY RSMPVETSCS SEFSWNECEQ ENSP00000261233/1-596 WFPKYIVPSQ DLRPYKVNID PSSEAPGHSC RSRPVESSCS SKFSWDEYEQ ENSBTAP00000033611/1-517 WSPKCATPSL DLRAPSVHTD TSAEAPGHSY RSRPVETSCS SIFSWNECKL BACU008198/1-515 WSPKHAAPSQ DLRASGVNMD PSAEVPGHSY RSMPVETSCS SEFSWNECEQ ENSTTRP00000008561/1-597 WSPKPAAPSQ DVRASGVNRD PSAEVPGHSY RSMPVEASCS SEFSWNECEQ 651 700 bmy_06815T0/1-424 YKKASISPED KEESKYCXGT ENSP00000261233/1-596 YKKE------ ---------- ENSBTAP00000033611/1-517 YKKASVSDED KEESKNC--- BACU008198/1-515 YKKASISPED KEESKYC--- ENSTTRP00000008561/1-597 CKKAS----- ----------