KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:43:28 2014 Check: 00 .. Name: ENSP00000242108/1-569 Len: 571 Check: 9163 Weight: 1.00 Name: ENSBTAP00000033621/1-571 Len: 571 Check: 5561 Weight: 1.00 Name: ENSTTRP00000002532/1-569 Len: 571 Check: 5530 Weight: 1.00 Name: BACU009543/1-293 Len: 571 Check: 892 Weight: 1.00 Name: bmy_16381T0/1-293 Len: 571 Check: 682 Weight: 1.00 // 1 50 ENSP00000242108/1-569 MGSTLGCHRS IPRDPSDLSH SRKFSAACNF SNILVNQERL NINTATEEEL ENSBTAP00000033621/1-571 MGSTLGCHRS IPRDPSDLSH SRKFSAACNF SNILVNQERL NINTATEEEL ENSTTRP00000002532/1-569 MGSTLGCHRS IPRDPSDLSH SRKFSAACNF SNILVNQERL NINTATEEEL BACU009543/1-293 MGSTLGCHRS IPRDPSDLSH SRKFSAACNF SNILVNQERL NINTATEEEL bmy_16381T0/1-293 MGSTLGCHRS IPRDPSDLSH SRKFSAACNF SNILVNQERL NINTATEEEL 51 100 ENSP00000242108/1-569 MTLPGVTRAV ARSIVEYREY IGGFKKVEDL ALVSGVGATK LEQVKFEICV ENSBTAP00000033621/1-571 MTLPGVTRAV ARSIVEYREY IGGFKKVEDL ALVSGVGATK LEQVKFEICV ENSTTRP00000002532/1-569 MTLPGVTRAV ARSIVEYREY IGGFKKVEDL ALVSGVGATK LEQVKFEICV BACU009543/1-293 MTLPGVTRAV ARSIVEYREY IGGFKKVEDL ALVSGVGATK LEQVKFEICV bmy_16381T0/1-293 MTLPGVTRAV ARSIVEYREY IGGFKKVEDL ALVSGVGATK LEQVKFEICV 101 150 ENSP00000242108/1-569 SSKGSSAQHS PSSLRRDLLA EQQPHHLAT- -AVPLTPRVN INTATPAQLM ENSBTAP00000033621/1-571 SSKGSSAQHS PSSLRRDLMA EQQPHHLATA AAVPLTPRVN INTATPAQLM ENSTTRP00000002532/1-569 SSKGSSAQHS PSSLRRDLLA EQQPHHLAT- -AVPLTPRVN INTATPAQLM BACU009543/1-293 SSKGSSAQHS PSSLRRDLLA EQQPHHLVT- -AVPLTPRVN INTATPAQLM bmy_16381T0/1-293 SSKGSSAQHS PSSLRRDLLA EQQPHHLGT- -AVPLTPRVN INTATPAQLM 151 200 ENSP00000242108/1-569 SVRGLSEKMA LSIVDFRREH GPFRSVEDLV RMDGINAAFL DRIRHQVFAE ENSBTAP00000033621/1-571 SVRGLTEKMA VSIVDYRREH GPFRSVEDLV RMGGINAAFL DRIRHQVFAE ENSTTRP00000002532/1-569 SVRGLTEKMA VSIVDYRREH GPFRSVEDLV RMGGVSAAFL DRIRHQVFAE BACU009543/1-293 SVRGLTEKMA VSIVDYRREH GPFRSVEDLV RMGGVNAAFL DRIRHQVFAE bmy_16381T0/1-293 SVRGLTEKMA VSIVDYRREH GPFRSVEDLV RMGGVNAAFL DRIRHQVFAE 201 250 ENSP00000242108/1-569 RSRPPSTHTN GGLTFTAKPH PSPTSLSLQS EDLDLPPGGP TQIISTRPSV ENSBTAP00000033621/1-571 RSRPPSTHTN GGLTFTAKPH PSPTSLSLQS EDLDLPPGGP TQIISTRPSV ENSTTRP00000002532/1-569 RSRPPSTHTN GGLTFIAKPH PSPTSLSLQS EDLDLPPGGP TQIISTRPSV BACU009543/1-293 RSRPPSTHTN GGLTFTAKPH PSPTSLSLQS EDLDLPPGGP TQIISTRPSV bmy_16381T0/1-293 RSRPPSTHTN GGLTFTAKPH PSPTSLSLQS EDLDLPPGGP TQIISTRPSV 251 300 ENSP00000242108/1-569 EAFGGTRDGR PVLRLATWNL QGCSVEKANN PGVREVVCMT LLENSIKLLA ENSBTAP00000033621/1-571 EAFGGTRDGR PVLRLATWNL QGCSVEKANN PGVREVVCMT LLENSIKLLA ENSTTRP00000002532/1-569 EAFGGTRDGR PVLRLATWNL QGCSVEKANN PGVREVVCMT LLENSIKLLA BACU009543/1-293 EAFGGTRDGR PVLRLATWNL QGCSVEKANN PGVREVVCMT LLEN------ bmy_16381T0/1-293 EAFGGTRDGR PVLRLATWNL QGCSVEKANN PGVREVVCMT LLEN------ 301 350 ENSP00000242108/1-569 VQELLDREAL EKFCTELNQP TLPNIRKWKG PRGCWKAVVA EKPSSQLQKG ENSBTAP00000033621/1-571 VQELLDREAL EKFCVELNQP ILPNIRKWKG PRGCWKAVVS ETPSTQLQKG ENSTTRP00000002532/1-569 VQELLDREAL EKFCTELNQP ILPNIRKWKG PRGCWKAVVS EKPTTQLQKG BACU009543/1-293 ---------- ---------- ---------- ---------- ---------- bmy_16381T0/1-293 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000242108/1-569 AGYAGFLWDA AAGMELRDAG SQESSPSNGH GKLAGPSPYL GRFKVGSHDL ENSBTAP00000033621/1-571 AGFAGFLWDT AAGVELRDAA WQESSPGNGH GKPVGPSPYL ARFKVGSHDL ENSTTRP00000002532/1-569 AGFAGFLWDT AAGVELRDAT WQESSPGNGH GKPTGPSPYL VRFKVGSHDL BACU009543/1-293 ---------- ---------- ---------- ---------- ---------- bmy_16381T0/1-293 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000242108/1-569 TLVNLHLAAL TLLGSENPSK NHSDGHRLAS FAQTLQETLK GEKDVIILGD ENSBTAP00000033621/1-571 TLVNLHLATL TLPGGENLSK NHSDSHRWAS FTQTLQETLK GEKDVIVLGD ENSTTRP00000002532/1-569 TLVNLHLAAL TLPGGENPSK SHSDSHCWAS FVQTLQETLK GEKEVIVLGD BACU009543/1-293 ---------- ---------- ---------- ---------- ---------- bmy_16381T0/1-293 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000242108/1-569 FGQGPDSNDY DILRKEKFHH LIPAHTFTNI STKNPQGSKS LDNIWISKSL ENSBTAP00000033621/1-571 FGQGPDSSDY DILRKEKFHH LIPAHTFTNI STKNPQGSKA LDNIWISKSL ENSTTRP00000002532/1-569 FGQGPDSSDY DILRKEKFHH LVPAHTFTNI STKNPQGSKT LDNIWISKSL BACU009543/1-293 ---------- ---------- ---------- ---------- ---------- bmy_16381T0/1-293 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000242108/1-569 KKVFTGHWAV VREGLTNPWI PDNWSWGGVA SEHCPVLAEF YTEKDWSKKD ENSBTAP00000033621/1-571 KKVFTGHWAV VREGLTNPWI PDNWSWGGVA SEHCPVLAEF YTEKDWTRKE ENSTTRP00000002532/1-569 KKVFTGHWAV LREGLTNPWI PDNWSWGGVA SEHCPVLGEF YTEKDWNRKE BACU009543/1-293 ---------- ---------- ---------- ---------- ---------- bmy_16381T0/1-293 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000242108/1-569 APRNGSGVAL ERSEANIKHE R ENSBTAP00000033621/1-571 GPRSGNGLTL ERSEANIKHE R ENSTTRP00000002532/1-569 GPRNGNGVTL ERSEANIKHE R BACU009543/1-293 ---------- ---------- R bmy_16381T0/1-293 ---------- ---------- R