KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:43:32 2014 Check: 00 .. Name: ENSP00000345873/1-764 Len: 797 Check: 9392 Weight: 1.00 Name: ENSBTAP00000033686/1-760 Len: 797 Check: 8119 Weight: 1.00 Name: BACU008792/1-711 Len: 797 Check: 1139 Weight: 1.00 Name: bmy_12508T0/1-596 Len: 797 Check: 8705 Weight: 1.00 Name: ENSTTRP00000006467/1-727 Len: 797 Check: 3293 Weight: 1.00 // 1 50 ENSP00000345873/1-764 MIEPFGNQYI VARPVYSTNA FEENHKKTGR HHKTFLDHLK VCCSCSPQKA ENSBTAP00000033686/1-760 MIEPIGNQYV VARPVYSANA FGEDHKKKQR HHKTLLDHLK KLCRCSAQRA BACU008792/1-711 MIEPIGNQYV VARPVYSANA FGEEHKKKHR HRKTLLDHLK KWFRCSAQKA bmy_12508T0/1-596 MIEPIGNQYV VARPVYSANA FGEEHKKKHR HHKTLLDHLK KWF------- ENSTTRP00000006467/1-727 MIEPIGNQYV VARPVYSTKA FDEEHKKKHR HHKTLLDHLK TWFRCSAQKA 51 100 ENSP00000345873/1-764 KRIVLSLFPI ASWLPAYRLK EWLLSDIVSG ISTGIVAVLQ GLAFALLVDI ENSBTAP00000033686/1-760 KKIAFSSFPI ASWLPAYRIK EWLLSDIVSG ISTGLVAVLQ GLAFALLVTI BACU008792/1-711 KRIALSLFPI ASWLPAYHIK EWLLSDIVSG ISTGLVAVLQ GLAFALLVTI bmy_12508T0/1-596 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006467/1-727 KRIALSLFPI ASWLPAYRIK EWLLSDIVSG ISTGLVAVLQ XXXXXXXXXX 101 150 ENSP00000345873/1-764 PPVYGLYASF FPAIIYLFFG TSRHISVGPF PILSMMVGLA VSGAVSKAVP ENSBTAP00000033686/1-760 PPGYGLYAAF FPVIIYFFLG TSRHISVGPF PVLSMMVG-- --AVVVRLTP BACU008792/1-711 PPSYGLYAAF FPVIIYFFLG TSRHISVGPF PVLSMMVG-- --AVVVRLTP bmy_12508T0/1-596 ---------- ---------- --RHISVGPF PVLSMMVG-- --AVVVRLTP ENSTTRP00000006467/1-727 XXXXXXXXXX XXXXXXXXXX XXXXXXXXPF PVLSMMVG-- --AVVVRLTP 151 200 ENSP00000345873/1-764 DRNATTLGLP NNS-NNSSLL DDERVRVAAA ASVTVLSGII QLAFGILRIG ENSBTAP00000033686/1-760 TDSAADSTFA NSSMTNDSSI DEQKVIV--A ATVTILSGII QLLMGVLRLG BACU008792/1-711 TANTADPTVT YSSVANDSSL DEHKVMV--A ATVTILSGII QLLMGVLQLG bmy_12508T0/1-596 IANTADPAVT NSSVANDSSL DEHKVMV--A ATVTILSGII QLLMGVLQLG ENSTTRP00000006467/1-727 IADTADPTVT NSSVANDSSL DDHKVMV--A ATVTILSGII QLLMGVLQLG 201 250 ENSP00000345873/1-764 FVVIYLSESL ISGFTTAAAV HVLVSQLKFI FQLTVPSHTD PVSIFKVLYS ENSBTAP00000033686/1-760 FVVIYLSESL ISGFTTAAAI HVLVSQLKFM FQLTVPAHTD PFSLFKVLES BACU008792/1-711 FVVIYLSESL ISGFTTAAAV HVLVSQLKFI LQLTVPAHAD PFSIFKVLIS bmy_12508T0/1-596 FVVIYLSESL ISGFTTAAAV HVLVSQLKFI LQLTVPAHAD PFSIFKVLIS ENSTTRP00000006467/1-727 FVVIYLSESL ISGFTTAAAV HVLVSQLKFI LQLTVPAHAD PFSIFKVLTS 251 300 ENSP00000345873/1-764 VFSQIEKTNI ADLVTALIVL LVVSIVKEIN QRFKDKLPVP IPIEFIMTVI ENSBTAP00000033686/1-760 VFSQIEKTNI ADLVTSLVIL VVVFVVKEIN QRYKAKLPVP IPIELIVTVI BACU008792/1-711 IFSQIEKTNI ADLVTSLIIL LVVFVVKEIN QRYKAKLPVP IPIELIMTVI bmy_12508T0/1-596 IFSQIEKTNI ADLVTSLVIL LVVFVVKEIN QRYKAKLPVP IPIELIMTVI ENSTTRP00000006467/1-727 IFSQIEKTNI ADLVTSLVIL LVVFVVKEIN QRYKAKLPVP IPIELIMTVI 301 350 ENSP00000345873/1-764 AAGVSYGCDF KNRFKVAVVG DMNPGFQPPI TPDVETFQNT VGDCFGIAMV ENSBTAP00000033686/1-760 ATGVSYGFDF KRRFNVAVIG EMKPGFQAPI IPSRQTFQDT IGDCFGIAIV BACU008792/1-711 ATGVSYGFDF KNRFNVAVVG EMKSGFQAPI TPNVQTFQDT IGDCFGIAIV bmy_12508T0/1-596 ATGVSYGFDL KNRFNVAVVG EMK------- --------NT IGDCFGIAIV ENSTTRP00000006467/1-727 ATAVSYGFDF KNRFNVAVVG EMESGFQAPI APNVQTFRDT IGDCFGIAIV 351 400 ENSP00000345873/1-764 AFAVAFSVAS VYSLKYDYPL DGNQELIALG LGNIVCGVFR GFAGSTALSR ENSBTAP00000033686/1-760 GFAVAFSVAS VYSLKYDYPI DGNQELIAMG AGNIFGGSFR GFAASTSLSR BACU008792/1-711 GFAVAFSVAS VYSLKYDYPI DGNQELIALG VGNIFGGSFR GFAASTALSR bmy_12508T0/1-596 GFAVAFSVAS VYSLKYDYPI DGN------- ---------- ---------- ENSTTRP00000006467/1-727 GFAVAFSVAS VYSLKYDYPI DGNQELIALG VSNIFGGSFR GFAASTALSR 401 450 ENSP00000345873/1-764 SAVQESTGGK TQIAGLIGAI IVLIVVLAIG FLLAPLQKSV LAALALGNLK ENSBTAP00000033686/1-760 SGVQESTGGK TQIAGLISAI IVLIVIVAIG FLLEPLQKSV LAALALGNLK BACU008792/1-711 SGVQESTGGK TQIAGLLSAV IVLIVILAIG FLLEPLQKSV LAALALGNLK bmy_12508T0/1-596 ---------- -QIAGLLSAV IVLIVILAIG FLLEPLQKSV LAALALGNLK ENSTTRP00000006467/1-727 SGVQESTGGK TQVAGLLSAV IVLIVILAIG FLLEPLQKSV LAALALGNLK 451 500 ENSP00000345873/1-764 GMLMQFAEIG RLWRKDKYDC LIWIMTFIFT IVLGLGLGLA ASVAFQLLTI ENSBTAP00000033686/1-760 GMLMQFVEIR RLWRKDKYDC LIWVMTFIFA VVLGLGLGLA ASVAFQLLTI BACU008792/1-711 GMLMQFTEIR RLWRKDKYDC LIWVMTFIFA VILGLGLGLA ASVAFQLLTI bmy_12508T0/1-596 GMLMQFTEIR RLWRKDKYDC LIWVMTFIFA VVLGLGLGLA ASVAFQLLTI ENSTTRP00000006467/1-727 GMLMQFTEIR RLWRKDKYDC LIWVMTFIFA VVLGLGLGLA ASVALQLLTI 501 550 ENSP00000345873/1-764 VFRTQFPKCS TLANI-GRTN IYKNKK---- ---------- ---------- ENSBTAP00000033686/1-760 VFRTQFPKCS MLANV-GRSN IYKNRK---- ---------- ---------- BACU008792/1-711 VFRTQLIKMA KHMEVLCKLD VVNGRRGTIP GAVGGSVKEG VCPPGHDGVR bmy_12508T0/1-596 VFRTQFPKCS TLANV-GRSN IYKNRK---- ---------- ---------- ENSTTRP00000006467/1-727 VFRTQFPKCS TLANV-GRSN IYKNRK---- ---------- ---------- 551 600 ENSP00000345873/1-764 -----DYYDM -YEPEGVKIF RCPSPIYFAN IGFFRRKLID AVGFSPLRIL ENSBTAP00000033686/1-760 -----DYSEI -YEPEGVKIF RCPSPIYFAN ISFFKQKLID AIGFRPLRIL BACU008792/1-711 IPQPLKFGKM -YEPDGVKIF RCPSPIYFAN ISFFKQKLID A--------- bmy_12508T0/1-596 -----DYSEV GFSP------ ---------- ---------- ------LRIL ENSTTRP00000006467/1-727 -----DYSEM -YEPDGVKIF RCPSPIYFAN ISFFKQKLID A--------- 601 650 ENSP00000345873/1-764 RKRNKALRKI RKLQKQGLLQ VTPKGFICTV DTIKDSDEEL DNNQIEVLDQ ENSBTAP00000033686/1-760 RKRNKALKKI RKLQKKGLLQ VTPKGFICTV DGFKDSDEEL DNDKIEELDQ BACU008792/1-711 ---------- ---------- ---------- VGFS------ ---------- bmy_12508T0/1-596 RKRNKALKKI RKLQKKGLLQ VTQKGYICTV DGFKDSDEEL DNDNIEGLDQ ENSTTRP00000006467/1-727 ---------- ---------- ---KGYICTV DGFKDSDEEL DNDNIEELDQ 651 700 ENSP00000345873/1-764 PINTTDLPFH IDWNDDLPLN IEVPKISLHS LILDFSAVSF LDVSSVRGLK ENSBTAP00000033686/1-760 PINTKDLPFQ IDWNANLPLN IVVPKINLHS LILDFSAVSF LDVSSMRGLK BACU008792/1-711 ---------- -------PLR ILHKRNKALK KIRKLQKKGL LQVTQ----- bmy_12508T0/1-596 PINTTDLPFQ IDWNADLPVN IVVPKINLHS LILDFSAVSF LDISSMRGLK ENSTTRP00000006467/1-727 PINTTDLPFQ IDWNADLPFN IMVPKINLHS LILDFSAVSF LDISSMRGLK 701 750 ENSP00000345873/1-764 SILQEFIRIK VDVYIVGTDD DFIEKLNRYE FFDGEVKSSI FFLTIHDAVL ENSBTAP00000033686/1-760 TILQEFIRIQ VDVYIVGTDD DFIEKLKRCE FFDDEVKDSI FFLTIHDAVL BACU008792/1-711 -ILQEFIRIQ VDVYIVGTDD DFIEKLARCE FFDDEVKDSI FFLTIHDAVL bmy_12508T0/1-596 MILQEFIRIQ VDVYIVGTDD DFIEKLARCE FFDDEVKDSI FFLTIHDAVL ENSTTRP00000006467/1-727 MILQEFIRIQ VDVYIVGTDD DFIEKLARCE FFDDEVKDSI FFLTIHDAVL 751 800 ENSP00000345873/1-764 HILMKKDYST SKFNPSQEKD GKI-DFTINT NGGLRNRVYE VPVETKF ENSBTAP00000033686/1-760 HILMKKDYST SKFNPSQEVE AKLDDFTINT NGGLRNRECQ VPIETKF BACU008792/1-711 HILMKKDYST SKFNPSQEKE AKL-DFTINT NGGLRNRECQ VPIETKF bmy_12508T0/1-596 HILMKKDYST SKFNPSQEKE AKL-DFTINT NGGLRNRECQ VPIETKF ENSTTRP00000006467/1-727 HILMKKDYST SKFNPSQEKE AKF-DFTINT NGALRNRECQ VPSETKF