KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:43:34 2014 Check: 00 .. Name: ENSP00000354669/1-517 Len: 519 Check: 8013 Weight: 1.00 Name: ENSBTAP00000033701/1-469 Len: 519 Check: 8221 Weight: 1.00 Name: ENSTTRP00000006607/1-502 Len: 519 Check: 1754 Weight: 1.00 Name: bmy_11133T0/1-459 Len: 519 Check: 3813 Weight: 1.00 Name: BACU012217/1-144 Len: 519 Check: 6836 Weight: 1.00 // 1 50 ENSP00000354669/1-517 MLLGPPPFNE STKPSPSPCH SFASQAWLRQ VPEVSKHLQC PSAKSLLTME ENSBTAP00000033701/1-469 ---------- ---------- ---------- ---------- --------ME ENSTTRP00000006607/1-502 ---------- --FPSYWIVL SFAYQASIKP VPEDNKVLWC PSV-PLLTME bmy_11133T0/1-459 ---------- ---------- ---------- ---------- --------ME BACU012217/1-144 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000354669/1-517 YHQPEDPAPG KAGTAEAVIP ENHEVLAGPD EHPQDTDARD ADGEAREREP ENSBTAP00000033701/1-469 HYQPEHPAPG ETRTAEAVSP ENHKVLSEPK EHPQDKDAKE ADGAAGEQEP ENSTTRP00000006607/1-502 HHEPEHPVRG EARTAEVVVP ENHEVLSEPS EPPQDKDAEE ADGAAGEQEP bmy_11133T0/1-459 HHQPEHPVCG EARTAEVVSP ENHEILSEPN EPPQDKDAEE AAGAAGEQEP BACU012217/1-144 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000354669/1-517 ADQALLPSQC GDNLESPLPE ASSAPPGPTL GTLPEVETIR ACSMPQELPQ ENSBTAP00000033701/1-469 VDQASLPAQG QDNFESPPPD ASSSQPGPAR ETRPETETAG ACSRLQELPQ ENSTTRP00000006607/1-502 VDEALLPAQG QGNLESPPPD ASSSQEGPAQ GTQPEVETAG ACSWPQELPQ bmy_11133T0/1-459 VDEALLPAQG QDNLESPPPD ASSSQEGPAQ GTQPEVETVG ACSWPQELPQ BACU012217/1-144 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000354669/1-517 SPRTRQPEPD FYCVKWIPWK GEQTPIITQS TNGPCPLLAI MNILFLQWKV ENSBTAP00000033701/1-469 SPRARQPELD FYCVKWIPWK GEQTPIITQS ANGPCPLIAI ANILFLQWKV ENSTTRP00000006607/1-502 SPRARQPELD FYCVKWIPWK GERTPIITQS TNGPCPLIAI MNILFLQWKV bmy_11133T0/1-459 SPRAQQPELD FYCVKWIPWK GERTPIITQS TNGPCPLIAI MNILFLQWKV BACU012217/1-144 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000354669/1-517 KLPPQKEVIT SDELMAHLGN CLLSIKPQEK SEGLQLNFQQ NVDDAMTVLP ENSBTAP00000033701/1-469 KLPPQKEVIT SDELMAHLGD CLLSIKPQEK SEGLQLNFQQ NVDDAMTVLP ENSTTRP00000006607/1-502 KLPPQKEVIA SDELMAHLGD CLLSIKPQEK SEGLQLNFQQ NVDDAMTVLP bmy_11133T0/1-459 KLPPQKEVIT SDELMAHLGD CLLSIKPQEK SEGLQLNFQQ NVDDAMTVLP BACU012217/1-144 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000354669/1-517 KLATGLDVNV RFTGVSDFEY TPECSVFDLL GIPLYHGWLV DPQSPEAVRA ENSBTAP00000033701/1-469 KLATGLDVNV RFTGVSDFEY TPECSVFDLL GIPLYHGWLV DPQSPEAVSA ENSTTRP00000006607/1-502 KLATGLDVNV RFTGVSDFEY TPECSIFDLL GIPLYHGWLV DPQSPEAVSA bmy_11133T0/1-459 KLATGLDVNV RFTGVSDFEY TPECSVFDLL GIPLYHGWLV DPQSPEAVSA BACU012217/1-144 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000354669/1-517 VGKLSYNQLV ERIITCKHSS DTNLVTEGLI AEQFLETTAA QLTYHGLCEL ENSBTAP00000033701/1-469 VGKLSYNQLV EKIITCKHSS DTNLVTEGLI AEQFLETTAA QLTYHGLCEL ENSTTRP00000006607/1-502 VGKLSYNQLV EKIITCKHSS DTNLVTEGLI AEQFLETTAA QLTYHGLCEL bmy_11133T0/1-459 VGKLSYNQLV EKIITCKHSS --------LI AEQFLETTAA QLTYHGLCEL BACU012217/1-144 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000354669/1-517 TAAAKEGELS VFFRNNHFST MTKHKSHLYL LVTDQGFLQE EQVVWESLHN ENSBTAP00000033701/1-469 TAAAKEGELS VFFRNNHFST MTKHKGHLYL LVTDQGFLQE EQVVWESLHN ENSTTRP00000006607/1-502 TTAAKEGELS VFFRNNHFST MTKHKGHLYL LVTDQGFLQE EQVVWESLHN bmy_11133T0/1-459 TTAAKEGELS VFFRNNHFST MTKHKGHLYL LVTDQGFLQE EQVVWESLHN BACU012217/1-144 ---------- ---------- MTKHKGHLYL LVTDQGFLQE EQVVWESLHN 401 450 ENSP00000354669/1-517 VDGDSCFCDS DFHLSHSLGK GPGAEGGSGS PETQLQVDQD YLIALSL--Q ENSBTAP00000033701/1-469 VDGDSCFCDS DFHLSHSPGK GPGTGGGSGS PEKQRQVDQD YLIALSLQQQ ENSTTRP00000006607/1-502 VDGDSCFCDS DFHLSHSLGK GPGAEGGSGS PEKQRQVDQD YLIALSL-QQ bmy_11133T0/1-459 VDGDSCFCDS DFHLSHSLGK GPGAEGGSGS PEKQRQVDQD YLIALSL--Q BACU012217/1-144 VDGDSCFCDS DFHLSHSLGK GPG-EGGSGS PEKQ-QVDQD YLITLSL-QQ 451 500 ENSP00000354669/1-517 QQQPRGPLGL TDLELAQQLQ QEEYQQQQAA QPVRMRTRVL SLQGRGATSG ENSBTAP00000033701/1-469 QPPPQGTSGL SDLELAQQLQ QEEYQQHQAA QAA--PARAP SPQGRGAASG ENSTTRP00000006607/1-502 QPSSQGTLGL SDLELAQQLQ QEEYQQHQAA QPV---QRAL LPQGRGAAFG bmy_11133T0/1-459 QQPSRGTLGL SDLELAQQLQ QEEYQQHQAA QPA--AARAL SPQGRGAAFG BACU012217/1-144 QQPSRGTLGL SDLELAQQLQ QEAYQQHQAA QPA--SARAL SPQGRGAAFG 501 550 ENSP00000354669/1-517 RPAGERRQRP KHESDCILL ENSBTAP00000033701/1-469 RPAAERRQRP KQESDCVLL ENSTTRP00000006607/1-502 RPAAERRQRP KQESDCVLL bmy_11133T0/1-459 RPAAERRQRP KQESDCVLL BACU012217/1-144 HPAAERRQRP KQESDCVLL