KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:43:40 2014 Check: 00 .. Name: bmy_06979T0/1-1383 Len: 1437 Check: 2635 Weight: 1.00 Name: ENSP00000297268/1-1366 Len: 1437 Check: 4871 Weight: 1.00 Name: ENSBTAP00000033771/1-1364 Len: 1437 Check: 8081 Weight: 1.00 Name: BACU016843/1-1274 Len: 1437 Check: 2449 Weight: 1.00 Name: ENSTTRP00000003493/1-1360 Len: 1437 Check: 5119 Weight: 1.00 // 1 50 bmy_06979T0/1-1383 ----MQVSQQ VLEYRSLRKQ IQAALQEATA K--------- ---KGPPGPP ENSP00000297268/1-1366 MLSFVDTRTL LLLAVTLCLA TCQSLQEETV RKGPAGDRGP RGERGPPGPP ENSBTAP00000033771/1-1364 MLSFVDTRTL LLLAVTSCLA TCQSLQEATA RKGPSGDRGP RGERGPPGPP BACU016843/1-1274 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003493/1-1360 MLSFVDTRTL LLLAVTSCLT TCQCTLGGKA LCKFP--HHL YSDQGPPGPP 51 100 bmy_06979T0/1-1383 GRDGDDGIPG PPGPPGPPGP PGLGGNFAAQ YDGKGVGIGP GPMGLMGPRG ENSP00000297268/1-1366 GRDGEDGPTG PPGPPGPPGP PGLGGNFAAQ YDGKGVGLGP GPMGLMGPRG ENSBTAP00000033771/1-1364 GRDGDDGIPG PPGPPGPPGP PGLGGNFAAQ FDAKGGG--P GPMGLMGPRG BACU016843/1-1274 ---------- ---------- ---------- ---------- --MGLMGPRG ENSTTRP00000003493/1-1360 GRDGDDGIPG PPGPPGPPGP PGLGGNFAAQ YDGKGVGIGP GPMGLMGPRG 101 150 bmy_06979T0/1-1383 PPGASGAPGP QGFQGLPGEP GEPGQTGPAG SRGPPGPPGK GGEDGHPGKP ENSP00000297268/1-1366 PPGAAGAPGP QGFQGPAGEP GEPGQTGPAG ARGPAGPPGK AGEDGHPGKP ENSBTAP00000033771/1-1364 PPGASGAPGP QGFQGPPGEP GEPGQTGPAG ARGPPGPPGK AGEDGHPGKP BACU016843/1-1274 PPGASGAPGP QGFQGLPGEP GEPGQTGPAG SRGPPGPPGK AGEDGHPGKP ENSTTRP00000003493/1-1360 PPGASGVPGP QGFQGPPGEP GEPGQTGPAG ARGPPGPPGK AGEDGHPGKP 151 200 bmy_06979T0/1-1383 GRPGERGVVG PQGARGFPGT PGLPGFKGIR GHNGLDGLKG QPGTPGVKGE ENSP00000297268/1-1366 GRPGERGVVG PQGARGFPGT PGLPGFKGIR GHNGLDGLKG QPGAPGVKGE ENSBTAP00000033771/1-1364 GRPGERGVVG PQGARGFPGT PGLPGFKGIR GHNGLDGLKG QPGAPGVKGE BACU016843/1-1274 GRPGERGVVG PQGARGFPGT PGLPGFKGIR GHNGLDGLKG QPGTPGVKGE ENSTTRP00000003493/1-1360 GRPGERGVVG PQGARGFPGT PGLPGFKGIR GHNGLDGLKG QPGTPGVKGE 201 250 bmy_06979T0/1-1383 PGAAGENGIP GQMGARGLPG ERGRVGAPGP AGARGSDGSV GPVGPAGPLG ENSP00000297268/1-1366 PGAPGENGTP GQTGARGLPG ERGRVGAPGP AGARGSDGSV GPVGPAGPIG ENSBTAP00000033771/1-1364 PGAPGENGTP GQTGARGLPG ERGRVGAPGP AGARGSDGSV GPVGPAGPIG BACU016843/1-1274 PGAPGENGIP GQIGARGLPG ERGRVGAPGP AGARGSDGSV GPVGPAGPLG ENSTTRP00000003493/1-1360 PGAPGENGIP GQVGARGLPG ERGRVGAPGP AGARGSDGSV GPVGPAGPVG 251 300 bmy_06979T0/1-1383 SAGPPGFPGA PGPKGELGPV GNPGPSGPAG SRGEVGLPGV SGPVGPPGNP ENSP00000297268/1-1366 SAGPPGFPGA PGPKGEIGAV GNAGPAGPAG PRGEVGLPGL SGPVGPPGNP ENSBTAP00000033771/1-1364 SAGPPGFPGA PGPKGELGPV GNPGPAGPAG PRGEVGLPGL SGPVGPPGNP BACU016843/1-1274 SAGPPGFPGA PGPKGELGPV GNPGPPGPAG SRGEVGLAGV SGPVGPPGNP ENSTTRP00000003493/1-1360 SAGPPGFPGA PGPKGEIGPV GNPGPAGPAG SRGEVGLPGV SGPVGPPGNP 301 350 bmy_06979T0/1-1383 GANGLPGAKG AAVSIWLKRA AVVLKGLPGV AGAPGLPGPR GIPGPVGAAG ENSP00000297268/1-1366 GANGLTGAKG AA-------- -----GLPGV AGAPGLPGPR GIPGPVGAAG ENSBTAP00000033771/1-1364 GANGLPGAKG AA-------- -----GLPGV AGAPGLPGPR GIPGPVGAAG BACU016843/1-1274 GANGLPGAKG AA-------- -----GLPGV AGAPGLPGPR GIPGPVGAAG ENSTTRP00000003493/1-1360 GANGLHGAKG AA-------- -----GLPGV AGAPGLPGPR GIPGPVGAAG 351 400 bmy_06979T0/1-1383 ATGARGLVGE PGPAGSKGES GNKGEPGAAG PTGPPGPSGE EGKRGTTGEI ENSP00000297268/1-1366 ATGARGLVGE PGPAGSKGES GNKGEPGSAG PQGPPGPSGE EGKRGPNGEA ENSBTAP00000033771/1-1364 ATGARGLVGE PGPAGSKGES GNKGEPGAVG QPGPPGPSGE EGKRGSTGEI BACU016843/1-1274 ATGARGLIGE PGPAGSKGES GNKGEPGAAG PTGPPGPSGE EGKRGTTGEI ENSTTRP00000003493/1-1360 ATGARGLVGE PGPAGSKGES GNKGEPGAAG PTGPPGPSGE EGKRGSTGEI 401 450 bmy_06979T0/1-1383 GSTGPPGPPG LRGNPGSRGL PGADGRAGVM GPPGSRGGTG PAGMRGPSGD ENSP00000297268/1-1366 GSAGPPGPPG LRGSPGSRGL PGADGRAGVM GPPGSRGASG PAGVRGPNGD ENSBTAP00000033771/1-1364 GPAGPPGPPG LRGNPGSRGL PGADGRAGVM GPAGSRGATG PAGVRGPNGD BACU016843/1-1274 GSAGPPGPPG LRGNPGSRGL PGADGRAGVM GPHGSRGGTG PAGMRGPSGD ENSTTRP00000003493/1-1360 GSAGPPGPPG LRGNPGSRGL PGADGRAGVM GPHGSRGGTG PAGVRGPSGD 451 500 bmy_06979T0/1-1383 SGRPGEPGLM GPRGFPGSPG NVGPAGKEGP MGLPGIDGRP GAIGPAGARG ENSP00000297268/1-1366 AGRPGEPGLM GPRGLPGSPG NIGPAGKEGP VGLPGIDGRP GPIGPAGARG ENSBTAP00000033771/1-1364 SGRPGEPGLM GPRGFPGSPG NIGPAGKEGP VGLPGIDGRP GPIGPAGARG BACU016843/1-1274 SGRPGEPGLM GPRGFPGSPG NVGPAGKEGP MGLPGIDGRP GAIGPAGARG ENSTTRP00000003493/1-1360 SGRPGEPGLM GPRGFPGSPG NVGPAGKEGP MGLPGIDGRP GPIGPAGARG 501 550 bmy_06979T0/1-1383 EPGNIGFPGP KGPTGDPGKN GEKGHAGLAG PRGAAGPEGN NGAQGPPGLQ ENSP00000297268/1-1366 EPGNIGFPGP KGPTGDPGKN GDKGHAGLAG ARGAPGPDGN NGAQGPPGPQ ENSBTAP00000033771/1-1364 EPGNIGFPGP KGPSGDPGKA GEKGHAGLAG ARGAPGPDGN NGAQGPPGLQ BACU016843/1-1274 EPGNIGFPGP KGPTGDPGKN GEKGHAGLAG PRGAPGPEGN NGAQGPPGLQ ENSTTRP00000003493/1-1360 EPGNIGFPGP KGPTGDPGKN GEKGHAGLAG PRGAPGPDGN NGAQGPPGPQ 551 600 bmy_06979T0/1-1383 GVSGGKGEQG PAGPPGFQGL PGPAGTAGEA GKAGERGIPG EFGLPGPAGP ENSP00000297268/1-1366 GVQGGKGEQG PPGPPGFQGL PGPSGPAGEV GKPGERGLHG EFGLPGPAGP ENSBTAP00000033771/1-1364 GVQGGKGEQG PAGPPGFQGL PGPAGTAGEA GKPGERGIPG EFGLPGPAGA BACU016843/1-1274 GVSGGKGEQG PAGPPGFQGL PGPSGTAGEA GKAGERGTPG EFGLPGPAGP ENSTTRP00000003493/1-1360 GVS-GKGEQG PAGPPGFQGL PGPAGTAGEA GKAGERGIPG EFGLPGPAGP 601 650 bmy_06979T0/1-1383 RGERGPPGES GAAGPAGPIG NRGPSGPA-G PDGNKGEPGV AGAPGTAGPS ENSP00000297268/1-1366 RGERGPPGES GAAGPTGPIG SRGPSGPP-G PDGNKGEPGV VGAVGTAGPS ENSBTAP00000033771/1-1364 RGERGPPGES GAAGPTGPIG SRGPSGPP-G PDGNKGEPGV VGAPGTAGPS BACU016843/1-1274 RGERGPPGES GAAGPAGPIG NRGPSGPA-G PDGNKGEPGV VGAPGTAGPS ENSTTRP00000003493/1-1360 RGERDPPGES -AAGPTGPVG SRGPSGPAXX XXXXXGEPGV VGAPGSAGPS 651 700 bmy_06979T0/1-1383 GPSGLPGERG AAGIPGGKGE KGETGLRGDA GSHGRDGARG APGAVGAPGP ENSP00000297268/1-1366 GPSGLPGERG AAGIPGGKGE KGEPGLRGEI GNPGRDGARG APGAVGAPGP ENSBTAP00000033771/1-1364 GPSGLPGERG AAGIPGGKGE KGETGLRGDI GSPGRDGARG APGAIGAPGP BACU016843/1-1274 GPSGLPGERG AAGIPGGKGE KGETGLRGDA GSHGRDGARG APGAVGAPGP ENSTTRP00000003493/1-1360 GPNGLPGERG AAGIPGGKGE KGETGLRGDA GSHGRDGARG APGAVGAPGP 701 750 bmy_06979T0/1-1383 AGANGDRFSF PSYTRARVKL ALPVPLVLLV LVVSLVSVVR LVPLAPMDLL ENSP00000297268/1-1366 AGATGDRGEA GAAGPAGPAG PRGSP----- -----GERGE VGPAGPNGFA ENSBTAP00000033771/1-1364 AGANGDRGEA GPAGPAGPAG PRGSP----- -----GERGE VGPAGPNGFA BACU016843/1-1274 AGANGDRGEA GPAGSAGPAG PRGMP----- -----GERGE VGPAGPNGFA ENSTTRP00000003493/1-1360 AGANGDRGEA GPAGPAGPAG PRGSP----- -----GERGE VGPAGPNGFA 751 800 bmy_06979T0/1-1383 VLLVLLVNLV LKEREEQKDP RVKMALLVPQ APLELLAQLV QMVPLVLLEV ENSP00000297268/1-1366 GPAGAAGQPG AKGERGAKGP KGENGVVGPT GPVGAAGPAG PNGPPGPAGS ENSBTAP00000033771/1-1364 GPAGAAGQPG AKGERGTKGP KGENGPVGPT GPVGAAGPSG PNGPPGPAGS BACU016843/1-1274 GPAGAAGQPG AKGERGTKGP KGENGPAGPT GPVGAAGPSG PNGPPGPAGS ENSTTRP00000003493/1-1360 GPAGAAGQPG AKGERGTKGP KGENGPTGPT GPVGAAGPAG PNGPPGPAGS 801 850 bmy_06979T0/1-1383 VVMEAPLVLL VSLVLLDGLV LLDPLVSLAP LVPLVLLVKK DFVGLVVTKV ENSP00000297268/1-1366 RGDGGPPGMT GFPGAAGRTG PPGPSGISGP PGPPGPAGKE GLRGPRGDQG ENSBTAP00000033771/1-1364 RGDGGPPGAT GFPGAAGRTG PPGPSGISGP PGPPGPAGKE GLRGPRGDQG BACU016843/1-1274 RGDGGPPGVT GFPGAAGRTG PPGPSGITGP PGPTGPAGKE GLRGPRGDQG ENSTTRP00000003493/1-1360 RGDGGPPGAT GFPGAAGRTG PPGPSGITGP PGPPGPAGKE GLRGPRGDQG 851 900 bmy_06979T0/1-1383 QLVELEKQVL LALLALLVRR VPLESLVLLD LLAPQVLKVF LVLLVFWVSQ ENSP00000297268/1-1366 PVGRTGEVGA VGPPGFAGEK GPSGEAGTAG PPGTPGPQGL LGAPGI---- ENSBTAP00000033771/1-1364 PVGRSGETGA SGPPGFVGEK GPSGEPGTAG PPGTPGPQGL LGAPGF---- BACU016843/1-1274 PVGRTGETGA SGPPGFVGEK GPSGEPGTAG SPGTPGPQGL LGAPGF---- ENSTTRP00000003493/1-1360 PVGRTGETGA SGPPGFVGEK GPSGEPGTAG SPGTPGPQGL LGAPGF---- 901 950 bmy_06979T0/1-1383 ALEVNVVYQV LLDLWVNLAL SAFQAQLGPV VPLVLWVILA SMVLLVKLVV ENSP00000297268/1-1366 ---------- -------LGL PGSRGERG-- ----LPGVAG AVGEPGPLGI ENSBTAP00000033771/1-1364 ---------- -------LGL PGSRGERG-- ----LPGVAG SVGEPGPLGI BACU016843/1-1274 ---------- -------LGL PGSRGERG-- ----LPGVAG SVGEPGPLGI ENSTTRP00000003493/1-1360 ---------- -------LGL PGSRGERG-- ----LPGVAG SVGEPGPLGI 951 1000 bmy_06979T0/1-1383 MATLGMMVPQ AAMVKLDT-- ---------- --------RE SVVTLVTLVP ENSP00000297268/1-1366 AGPPGARGPP GAVGSPGVNG APGEAGRDGN PGNDGPPGRD GQPG------ ENSBTAP00000033771/1-1364 AGPPGARGPP GNVGNPGVNG APGEAGRDGN PGNDGPPGRD GQPG------ BACU016843/1-1274 SGPTGARGPP GAVGNPGVNG APGEAGRDGN PGSDGPPGRD GQAG------ ENSTTRP00000003493/1-1360 AGPTGARGPP GAVGNPGVNG APGEAGRDGN PGNDGPPGRD GQAG------ 1001 1050 bmy_06979T0/1-1383 LVLWVHLVLK ALWVPLANME TAVNLVLLVP LVWPVLLVQE VPVYVHGEN- ENSP00000297268/1-1366 -----HKGER GYPGNIGPVG AAGAPGPHGP V--------- GPAGKHGNRG ENSBTAP00000033771/1-1364 -----HKGER GYPGNAGPVG AAGAPGPQGP V--------- GPVGKHGNRG BACU016843/1-1274 -----HKGDR GYPGNAGPTG TAGAPGPQGP V--------- GPTGKHGNRG ENSTTRP00000003493/1-1360 -----HKGDR GYPGNAGPTG TVGAPGPQGP V--------- GPTGKHGHRG 1051 1100 bmy_06979T0/1-1383 ---------- ------FCTA GPQGIRGDKG EPGDKGPRGL PGLKGHNGLQ ENSP00000297268/1-1366 ETGPSGPVGP AGAVGPRGPS GPQGIRGDKG EPGEKGPRGL PGLKGHNGLQ ENSBTAP00000033771/1-1364 EPGPAGAVGP AGAVGPRGPS GPQGIRGDKG EPGDKGPRGL PGLKGHNGLQ BACU016843/1-1274 ESGPSGPTGL AGAVGPRGPS GPQGIRGDKG EPGDKGPRGL PGLKGHNGLQ ENSTTRP00000003493/1-1360 EPGPSGPIGL AGAVGPRGPS GPQGIRGDKG EPGDKGPRGL PGLKGHNGLQ 1101 1150 bmy_06979T0/1-1383 GLPGFAGHHG DQGAPGTVGP AGPRGPAGPS GPSGKDGRTG HPGAVGPAGI ENSP00000297268/1-1366 GLPGIAGHHG DQGAPGSVGP AGPRGPAGPS GPAGKDGRTG HPGTVGPAGI ENSBTAP00000033771/1-1364 GLPGLAGHHG DQGAPGAVGP AGPRGPAGPS GPAGKDGRIG QPGAVGPAGI BACU016843/1-1274 GLPGFAGHHG DQGAPGTVGP AGPRGPAGPS GPSGKDGRTG HPGAVGPAGI ENSTTRP00000003493/1-1360 GLPGLAGHHG DQGAPGTVGP AGPRGPSGPS GPSGKDGRTG HPGAVGPAGI 1151 1200 bmy_06979T0/1-1383 RGSQGSQGPA GPPGPPGPPG PPGQSGGGYD FGFEGDFYRA DQPRSPPSLR ENSP00000297268/1-1366 RGPQGHQGPA GPPGPPGPPG PPGVSGGGYD FGYDGDFYRA DQPRSAPSLR ENSBTAP00000033771/1-1364 RGSQGSQGPA GPPGPPGPPG PPGPSGGGYE FGFDGDFYRA DQPRSPTSLR BACU016843/1-1274 RGSQGSQGPA GPPGPPGPPG PPGQSGGGYD FGFEGDFYRA DQPRSPPSLR ENSTTRP00000003493/1-1360 RGSQGSQGPS GPPGPPGPPG PPGPSGGGYD FGFDGDFYRA DQPRSPPSLR 1201 1250 bmy_06979T0/1-1383 PKDYEVDATL KSLNNQIETL LTPEGSKKNP ARTCRDLRLS HPEWSSGYYW ENSP00000297268/1-1366 PKDYEVDATL KSLNNQIETL LTPEGSRKNP ARTCRDLRLS HPEWSSGYYW ENSBTAP00000033771/1-1364 PKDYEVDATL KSLNNQIETL LTPEGSRKNP ARTCRDLRLS HPEWSSGYYW BACU016843/1-1274 PKDYEVDATL KSLNNQIETL LTPEGSKKNP ARTCRDLRLS HPEWSSGYYW ENSTTRP00000003493/1-1360 PKDYEVDATL KSLNNQIETL LTPEGSRKNP ARTCRDLRLS HPEWSSGYYW 1251 1300 bmy_06979T0/1-1383 IDPNQGCTMD AIKVYCDFST GETCIRAQPE NIPVKNWYRS SKAKKHVWVG ENSP00000297268/1-1366 IDPNQGCTMD AIKVYCDFST GETCIRAQPE NIPAKNWYRS SKDKKHVWLG ENSBTAP00000033771/1-1364 IDPNQGCTMD AIKVYCDFST GETCIRAQPE DIPVKNWYRN SKAKKHVWVG BACU016843/1-1274 IDPNQGCTMD AIKVYCDFST GETCIRAQPE NIPVKNWYRS SKAKKHVWVG ENSTTRP00000003493/1-1360 VDPNQGCTMD AIKVYCDFST GETCIRAQPE NIPVKNWYRS SKARKHVWVG 1301 1350 bmy_06979T0/1-1383 ETINGGTQFE YNVEGVTTKE MATQLAFMRL LANHASQNIT YHCKNSIAYM ENSP00000297268/1-1366 ETINAGSQFE YNVEGVTSKE MATQLAFMRL LANYASQNIT YHCKNSIAYM ENSBTAP00000033771/1-1364 ETINGGTQFE YNVEGVTTKE MATQLAFMRL LANHASQNIT YHCKNSIAYM BACU016843/1-1274 ETINGGTQFE YNVEGVTTKE MATQLAFMRL LANHASQNIT YHCKNSIAYM ENSTTRP00000003493/1-1360 ETINGGTQFE YNVEGVTTKE MATQLAFMRL LANHASQNIT YHCKNSIAYM 1351 1400 bmy_06979T0/1-1383 DEETGNLKKA VILQGSNDVE LVAEGNSRFT YTVLVDGCSK KINEWRKTII ENSP00000297268/1-1366 DEETGNLKKA VILQGSNDVE LVAEGNSRFT YTVLVDGCSK KTNEWGKTII ENSBTAP00000033771/1-1364 DEETGNLKKA VILQGSNDVE LVAEGNSRFT YTVLVDGCSK KTNEWQKTII BACU016843/1-1274 DEETGNLKKA VILQGSNDVE LVAEGNSRFT YTVLVDGCSK KINEWRKTII ENSTTRP00000003493/1-1360 DEETGNLKKA VILQGSNDVE LVAEGNSRFT YTVLVDGCSK KINEWRKTII 1401 1450 bmy_06979T0/1-1383 EYKTNKPSRL PILDIAPLDI GGADQEIRLN IGPVCFK ENSP00000297268/1-1366 EYKTNKPSRL PFLDIAPLDI GGADQEFFVD IGPVCFK ENSBTAP00000033771/1-1364 EYKTNKPSRL PILDIAPLDI GGADQEIRLN IGPVCFK BACU016843/1-1274 EYKTNKPSRL PILDIAPLDI GGADQEIRLN IGPVCFK ENSTTRP00000003493/1-1360 EYKTNKPSRL PILDIA-LDI GGADQKSD-N IGPVCF-