KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:43:42 2014 Check: 00 .. Name: ENSP00000248633/1-1283 Len: 1329 Check: 4877 Weight: 1.00 Name: ENSBTAP00000033778/1-1281 Len: 1329 Check: 2485 Weight: 1.00 Name: ENSTTRP00000010748/1-1282 Len: 1329 Check: 7405 Weight: 1.00 Name: bmy_09341T0/1-1277 Len: 1329 Check: 7781 Weight: 1.00 Name: BACU016857/1-1283 Len: 1329 Check: 6302 Weight: 1.00 // 1 50 ENSP00000248633/1-1283 -MWGSDRLAG AGGGGAAVTV AFTNARDCFL HLPRRLVAQL HLLQNQAIEV ENSBTAP00000033778/1-1281 -MWGSGRLAG SGG-GAAVTV AFTNARDCFL HLPRRLVAQL HLLQNQAIEV ENSTTRP00000010748/1-1282 -MWGGGRLAG AGGDGAVVTV AFTNARDCFL HLPRRLVAQL HLLQNQAIEV bmy_09341T0/1-1277 MMWGSGRLAG AGGDGAAVTV VFTNARDCFL HLPRRLVAQL HLLQNQAIEV BACU016857/1-1283 MMWGSGRLAG AGGDGAAVTV AFTNARDCFL HLPRRLVAQL HLLQNQAIEV 51 100 ENSP00000248633/1-1283 VWSHQPAFLS WVEGRHFSDQ GENVAEINRQ VGQKLGLSNG GQVFLKPCSH ENSBTAP00000033778/1-1281 AWGHQPAFLS WVEGRHFSDE GENVAEINRQ VGQKLGLSNG AQVFLKPCSH ENSTTRP00000010748/1-1282 SWGHEPAFLS WVEGRHFSDQ GENVAEISRQ FGQKLGLSNG EQVFLKPCSH bmy_09341T0/1-1277 AWGHEPAFLS WVEGRHFSDQ GENVAEISRQ VGQKLGLSNG EQVFLKPCSH BACU016857/1-1283 AWGHEPAFLS WVEGRHFSDQ GENVAEISRQ VGQKLGLSNG EQVFLKPCSH 101 150 ENSP00000248633/1-1283 VVSCQQVEVE PLSADDWEIL ELHAVSLEQH LLDQIRIVFP KAIFPVWVDQ ENSBTAP00000033778/1-1281 VVSCQQVEVE PLSADDWEIL ELHAASLEQH LLDQIRIVFP KAIFPVWVDQ ENSTTRP00000010748/1-1282 VVSCQQVEVE PLSADDWEIL ELHAASLEQN LLDQIRIVFP NAIFPVWVDQ bmy_09341T0/1-1277 VVSCQQVEVE PLSADDWEIL ELHAASLEQH LLDQIRIVFP KAIFPVWVDQ BACU016857/1-1283 VVSCQQVEVE PLSADDWEIL ELHAASLEQH LLDQIRIVFP KAIFPVWVDQ 151 200 ENSP00000248633/1-1283 QTYIFIQIVA LIPAASYGRL ETDTKLLIQP KTRRAKENTF SKADAEYKKL ENSBTAP00000033778/1-1281 QTYIFIQIAA LIPDAPYGRL ETDSRLLIQP KTRQAKESTF SEAEDIPGKF ENSTTRP00000010748/1-1282 QAYIFIRIVA LIPAAPYGRL ETDSKLLIQP KTHEAKENTF SKADNAHGKF bmy_09341T0/1-1277 QTYIFIRIVA LIPAAPYGRL ETDSRLLIQP KTHEAKENTF SKADNAHGKF BACU016857/1-1283 QTYIFIRIVA LIPAAPYGRL ETDSRLLIQP KTHEAKENTF SKADNAHGKF 201 250 ENSP00000248633/1-1283 HSYGRDQKGM MKELQTKQLQ SNTVGITESN ENESEIPVDS SSVASLWTMI ENSBTAP00000033778/1-1281 HHYGRDQKGL TKELQTKQLQ SNTVGVAGSK ERESEGRIDS SFIPSLWTMI ENSTTRP00000010748/1-1282 HNYAEDQKGL TRELQTKQLQ SNTVGVTGSK ETDSEDTVDS SLIPSLWTVI bmy_09341T0/1-1277 RNYGGDQKGL TRELQTKQLQ SNTVGVTGSK ETDSEDTIDS SLIPSLWSVM BACU016857/1-1283 HNYGGDQKGL TRELRTKQLQ SNTVGVAGSK ETDSEDTVDS SLIPSLWTVM 251 300 ENSP00000248633/1-1283 GSIFSFQSEK KQETSWGLTE INAFKNMQSK VVPLDNIFRV CKSQPPSIYN ENSBTAP00000033778/1-1281 GSIFSSGSEK KRDTSWGLTE VNAFKNMQSA VVPLDNIFRV CKSQPPSMCK ENSTTRP00000010748/1-1282 GSIFSFGSEK KQDTSWGLTE INAFKNMQSK VVPLDNIFRV CKSQPPSICN bmy_09341T0/1-1277 GSIFSFGSEK KQDTSWGVTE INAFKTMQSK VVPLNNIFRV CKSQPPSICN BACU016857/1-1283 GSIFSFGSEK KQDTSWGVTE INAFKTMQSK VVPLNNIFRV CKSQPPSICN 301 350 ENSP00000248633/1-1283 ASATSVFHKH CAIHVFPWDQ EYFDVEPSFT VTYGKLVKLL SPKQQQSKTK ENSBTAP00000033778/1-1281 ASATSVFHKH YAIHVFPWDQ EYFDVEPSFT VTYGKLVKLL SPKQQQSRTK ENSTTRP00000010748/1-1282 ASATSLFHKH YTIHVFPWDQ EYFDVEPSFT VTYGKLVKLL SPKQQQSKMK bmy_09341T0/1-1277 ASATSLFHKH YAIHVFPWDQ EYFDVEPSFT VTYGKLVKLL SPKQQQSKTK BACU016857/1-1283 ASATSLFHKH YAIHVFPWDQ EYFDVEPSFT VTYGKLVKLL SPKQQQSKTK 351 400 ENSP00000248633/1-1283 QNVLSPEKEK QMSEPLDQKK IRSDHNEEDE KACVLQVVWN GLEELNNAIK ENSBTAP00000033778/1-1281 QNVLSPEKEK QMSEPLDQKQ VSPDHSHKAG KACVLKVVWN GLEELKNAIK ENSTTRP00000010748/1-1282 QNVLSPEKEK QMSEPLDQKQ SSPDHSQEGG NACVLKVVWN GLEELENAIK bmy_09341T0/1-1277 QNVLSPEKEK QMSEPLDQKQ SSPDHSQEGG NACVLK---- ---------- BACU016857/1-1283 QNVLSPEKEK QMSEPLDQKQ SSPDHSQEGG NACVLKVVWN GLEELENAIK 401 450 ENSP00000248633/1-1283 YTKNVEVLHL GKVWIPDDLR KRLNIEMHAV VRITPVEVTP KIPRSLKLQP ENSBTAP00000033778/1-1281 YTKNLDVLHL GKVWIPHDLR KRLNIEMHAV VRITPVEITP NIPRSLKLQP ENSTTRP00000010748/1-1282 YTKNLEALHL GKVWIPDDLR KRLNIEMHAV VRITPVEITP KIPRFLKLQP bmy_09341T0/1-1277 ---------- ----IPDDLR KRLNIEMHAV VRITPVEITP KIPRFLKLQP BACU016857/1-1283 YTKNLEALHL GKVWIPDDLR KRLNIEMHAV VRITPVEITP KIPRFLKLQP 451 500 ENSP00000248633/1-1283 RENLPKDISE EDIKTVFYSW LQQSTTTMLP LVISEEEFIK LETKDGLKEF ENSBTAP00000033778/1-1281 TENLSEDVSE EDIKTVFYSW LQQSATTAVP LIVSEEEYIK LEMKDGVKEF ENSTTRP00000010748/1-1282 RENLLKDISE EDIKTVFYSW LQQSTTTTLP LIVSEEEYIK LEMKDGLKEF bmy_09341T0/1-1277 RENLPKDISE EDIKTVFYSW LQQSTTTTLP LIVSKEEYIK LEMKDGLKEF BACU016857/1-1283 RENLPKDISE EDIKTVFYSW LQQSTTTTLP LIVSKEEYIK LEMKDGLKEF 501 550 ENSP00000248633/1-1283 SLSIVHSWEK EKDKNIFLLS PNLLQKTTIQ VLLDPMVKEE NSEEIDFILP ENSBTAP00000033778/1-1281 SLNIVHSWEK EKEENIFLLS TNLLQKMTIQ VLLDPMVKEE NSEEIDFILP ENSTTRP00000010748/1-1282 SLNIVHSWEK EKEETLFLLS TNLLQKMTIQ VLLDPMVKEE NSEEIDFILP bmy_09341T0/1-1277 SLNIVHSWEK EKEETLFLLS TNLLQKMTIE VLLDPMVKEE NSEEIDFILP BACU016857/1-1283 SLNIVHSWEK EKEETLFLLS TNLLQKMTIE VLLDPMVKEE NSEEIDFMLP 551 600 ENSP00000248633/1-1283 FLKLSSLGGV NSLGVSSLEH ITHSLLGRPL SRQLMSLVAG LRNGALLLTG ENSBTAP00000033778/1-1281 FLKLNCLGGV NSLGVSSMEH ITHSLLGRPL SRQLVSLVAG LRNGALLLTG ENSTTRP00000010748/1-1282 FLKLNCLGGV NSLGVSSMEH ITHSLLGRPL SRQLMALVAG LRNGALLLTG bmy_09341T0/1-1277 FLKLNCLGGV NSLGVSSVEH ITHSLLGRPL SRQLMALVAG LRNGALLLTG BACU016857/1-1283 FLKLNCLGGV NSLGVSSVEH ITHSLLGRPL SRQLIALVAG LRNGALLLTG 601 650 ENSP00000248633/1-1283 GKGSGKSTLA KAICKEAFDK LDAHVERVDC KALRGKRLEN IQKTLEVAFS ENSBTAP00000033778/1-1281 GKGSGKSTLA KAICKEAFDI LDAHVEIIDC KALRGKRLEN IQKTLAAAFS ENSTTRP00000010748/1-1282 GKGSGKSTLA KAVCKEAFNL LDAHVEIVDC KALRGKRLEN IQKALXXXXX bmy_09341T0/1-1277 GKGSGKSTLA KAICKEAVNI LDAHVEIVDC KALRGKRLEN IQKALEAAFS BACU016857/1-1283 GKGSGKSTLA KAICKEAFNV LDAHVEIVDC KALRGKRLEN IQKALEAAFS 651 700 ENSP00000248633/1-1283 EAVWMQPSVV LLDDLDLIAG LPAVPEHEHS PDAVQSQRLA HALNDMIKEF ENSBTAP00000033778/1-1281 EALWRQPSVV LLDDLDLVVG RSALPEHEHS PEAIQSQRLA HALNDLVKEF ENSTTRP00000010748/1-1282 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXLNDVVKEF bmy_09341T0/1-1277 EAAWRQPSVV LLDDLDLVAG LSALPEHEHS PEAVQSRRLA HALNDVVKEF BACU016857/1-1283 EAAWRQPSVV LLDDLDLVAG LSALPEHEHS PEAVQSRRLA HALNDVVKEF 701 750 ENSP00000248633/1-1283 ISMGSLVALI ATSQSQQSLH PLLVSAQGVH IFQCVQHIQP PNQEQRCEIL ENSBTAP00000033778/1-1281 ISMGSLVALI ATSQSQHSLH PLLVSAQGIH IFQCVQHIQP PDQDQRCEIL ENSTTRP00000010748/1-1282 ISMGSLVALI ATSQSQHSLH PLLVSAQGVH IFQCVQHIQP PDQDQRCEIL bmy_09341T0/1-1277 ISMGSLVALI ATSQSQHSLH PLLVSAQGIH IFQC------ ---DQRCEIL BACU016857/1-1283 ISMGSLVALI ATSQSQHSLH PLLVSAQGIH IFQCVQHIQP PDQDQRCEIL 751 800 ENSP00000248633/1-1283 CNVIKNKLDC DINKFTDLDL QHVAKETGGF VARDFTVLVD RAIHSRLSRQ ENSBTAP00000033778/1-1281 HAIIKNKLDC DMKRFTGLDL QRIAKETEGF VARDFTMLVD RAIHSHLSHQ ENSTTRP00000010748/1-1282 YNVIKNKLDC DMNKFTDLDL QCIAKETEGF VARDFTVLMD RAIHSCLSHQ bmy_09341T0/1-1277 YNVIKNKLDC DMNKFTDLDL QCIAKETEGF VARDFTVLMD RAIHSCLSHQ BACU016857/1-1283 YNVIKNKLDC DMNKFTDLDL QCIAKETEGF VARDFTVLMD RAIHSCLCHQ 801 850 ENSP00000248633/1-1283 SISTREKLVL TTLDFQKALR GFLPASLRSV NLHKPRDLGW DKIGGLHEVR ENSBTAP00000033778/1-1281 NVYTREELVL TTLDFQKALR GFTPVSLRNV NLHKPRDLGW DRIGGLHDVR ENSTTRP00000010748/1-1282 SISTREELVL TTLDLRKALQ GFIPVSLRNV DLHNPRDLGW DKIGGLHEVR bmy_09341T0/1-1277 SISTREELVL TTLDLRKALR GFIPVSLRNV NLHNPRDLGW DKIGGLHEVR BACU016857/1-1283 SISTREELVL TTLDLRKALR GFIPVSLRNV NLHNPRDLGW DKIGGLHEVR 851 900 ENSP00000248633/1-1283 QILMDTIQLP AKYPELFANL PIRQRTGILL YGPPGTGKTL LAGVIARESR ENSBTAP00000033778/1-1281 QILVDTIQLP AKYPELFANL PIRQRTGVLL YGPPGTGKTL LAGVIARESG ENSTTRP00000010748/1-1282 QILVDTIQLP AKYPELFANL PIRQRTGVLL YGPPGTGKTL LAGVIARESG bmy_09341T0/1-1277 QILVDTIQLP AKYPELFANL PIRQRTGVLL YGPPGTGKTL LAG------- BACU016857/1-1283 QILVDTIQLP AKYPELFANL PIRQRTGVLL YGPPGTGKTL LAGVIARESG 901 950 ENSP00000248633/1-1283 MNFISVKGPE LLSKYIGASE QAVRDIFIRA QAAKPCILFF DEFESIAPRR ENSBTAP00000033778/1-1281 MNFISVKGPE LLSKYIGASE QAVRDVFVRA QAAKPCILFF DEFESIAPRR ENSTTRP00000010748/1-1282 MNFISVKGPE LLSKYIGASE QAVRDIFIRA QAAKPCILFF DEFESIAPRR bmy_09341T0/1-1277 -------GPE LLSKYIGASE QAVRDIFIRA QAAKPCILFF DEFESIAPRR BACU016857/1-1283 MNFISVKGPE LLSKYIGASE QAVRDIFIRA QAAKPCILFF DEFESIAPRR 951 1000 ENSP00000248633/1-1283 GHDNTGVTDR VVNQLLTQLD GVEGLQGVYV LAATSRPDLI DPALLRPGRL ENSBTAP00000033778/1-1281 GHDNTGVTDR VVNQLLTQLD GVEGLQGVYV LAATSRPDLI DPALLRPGRL ENSTTRP00000010748/1-1282 GHDNTGVTDR VVNQLLTQLD GVEGLQGVYV LAATSRPDLI DPALLRPGRL bmy_09341T0/1-1277 GHDNTGVTDR VVNQLLTQLD GVEGLQGVYV LAATSRPDLI DPALLRPGRL BACU016857/1-1283 GHDNTGVTDR VVNQLLTQLD GVEGLQGVYV LAATSRPDLI DPALLRPGRL 1001 1050 ENSP00000248633/1-1283 DKCVYCPPPD QVSRLEILNV LSDSLPLADD VDLQHVASVT DSFTGADLKA ENSBTAP00000033778/1-1281 DKCVYCPPPD QASRLEILNV LSESLPLADD VDLQHVASLT DSFTGADLKA ENSTTRP00000010748/1-1282 DKCVYCPPPD QVSRLEILNV LSDSLPLADD VDLQNVASVT SSFTGADLKA bmy_09341T0/1-1277 DKCVYCPPPD QVSRLEILNV LSDSLPLADD VDLQNVASVT NSFTGADLKA BACU016857/1-1283 DKCVYCPPPD QVSRLEILNV LSDSLPLADD VDLQNVASVT NSFTGADLKA 1051 1100 ENSP00000248633/1-1283 LLYNAQLEAL HGMLLSSGLQ DGSSSSDSDL SLSSMVFLNH SSGSDDSAGD ENSBTAP00000033778/1-1281 LLYGAQLEAL HGRLLTGGLQ DGGSSSDSDL SLSSMVFLNH SSGSDDSAGD ENSTTRP00000010748/1-1282 LLYNAQLEAL HGRLLSCGLQ DGGSSSDSDL SLSSMVFLNH SSGSDDSAGD bmy_09341T0/1-1277 LLYNAQLEAL HGRLLSCGLQ DGGSSSDSDL SLSSMVFLNH SSGSDDSAGD BACU016857/1-1283 LLYNAQLEAL HGRLLSCGLQ DGGSSSDSDL SLSSMVFLNH SSGSDDSAGD 1101 1150 ENSP00000248633/1-1283 GECGLDQSLV SLEMSEILPD ESKFNMYRLY FGSSYESELG NGTSSD---- ENSBTAP00000033778/1-1281 GECGLEQSLV SLEMSEVLQD ESKFNMYRLY FGSSYESELG NGTSSD---- ENSTTRP00000010748/1-1282 GECGLEQSLV SLEMSEVLPD ESKFNMYRLY FGSSYESELG NGTSSD---- bmy_09341T0/1-1277 GECGLEQSLV SLEMSEVLPD ESKFNMYRLY FGSSYESELG NGTSSDLTEL BACU016857/1-1283 GECGLEQSLV SLEMSEVLPD ESKFNMYRLY FGSSYESELG NGTSSD---- 1151 1200 ENSP00000248633/1-1283 ---------- ---------- ---------- ---------- -LSSQCLSAP ENSBTAP00000033778/1-1281 ---------- ---------- ---------- ---------- -LSSQCLSAP ENSTTRP00000010748/1-1282 ---------- ---------- ---------- ---------- -LSSQCLSAP bmy_09341T0/1-1277 AVRGAEVASG CDYPLVSFRT VEDNEKFGTI MSKILTTKCY LLSSQCLSAP BACU016857/1-1283 ---------- ---------- ---------- ---------- -LSSQCLSAP 1201 1250 ENSP00000248633/1-1283 SSMTQDLPGV PGKDQLFSQP PVLRTASQEG CQELTQEQRD QLRADISIIK ENSBTAP00000033778/1-1281 SSMTQEFPGA PGKDQ-SLRP PLFRTASQEG YQELTQEQRD QLRADISIIK ENSTTRP00000010748/1-1282 SSMTRDFPGV PGKDQ-SSQP PVFRTASQEG YQELTQEQRD QLRADISIIK bmy_09341T0/1-1277 SSMTRDFPGV PGKDQ-SSQP PVFRTASQEG YQELTQEQRD QLRADISIIK BACU016857/1-1283 SSMTRDFPGV PGKDQ-SSQP PVFRTASQEG YQELTQEQRD QLRADISIIK 1251 1300 ENSP00000248633/1-1283 GRYRSQSGED ESMNQPGPIK TRLAISQSHL MTALGHTRPS ISEDDWKNFA ENSBTAP00000033778/1-1281 GRYRSQTGED DALNPPGPSK TSLAISQSHL MTALSHTRPS ISEDDWKTFA ENSTTRP00000010748/1-1282 GRYQSQIGED DALNQAGPIR TSLAISQSHL MTALSHTRPS ISEDDWKNFA bmy_09341T0/1-1277 GRYQSHIGED DALNQPGPIR TSLAISQSHL MTALSHTRPS ISEDDWKNFA BACU016857/1-1283 GRYQSHIGED DALNQPGPIR TSLAISQAHL MTALSHTRPS ISEDDWKNFA 1301 1350 ENSP00000248633/1-1283 ELYESFQNPK RRKNQSGTMF RPGQKVTLA ENSBTAP00000033778/1-1281 ELYESFQNPK KRKNQSGTVF RPGQKVTLA ENSTTRP00000010748/1-1282 ELYESFQNPK KRKNQSGTVF RPGQKVTLA bmy_09341T0/1-1277 ELYESFQNPK KRKNQSGTVF RPGQKVTLA BACU016857/1-1283 ELYESFQNPK KRKNQSGTVF RPGQKVTLA