KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:43:43 2014 Check: 00 .. Name: ENSP00000405987/1-860 Len: 873 Check: 9274 Weight: 1.00 Name: ENSBTAP00000033782/1-863 Len: 873 Check: 5135 Weight: 1.00 Name: bmy_09336T0/1-869 Len: 873 Check: 7087 Weight: 1.00 Name: BACU016862/1-448 Len: 873 Check: 2170 Weight: 1.00 Name: ENSTTRP00000009796/1-118 Len: 873 Check: 3354 Weight: 1.00 // 1 50 ENSP00000405987/1-860 MSEKEGMSEV LEDTISQFRK ESRSQSMKEP GFIKETSNLI NEASDYLEGK ENSBTAP00000033782/1-863 MSEKKRTSEE LEDIISRYRK ESRSRSVEES GLTKETSNLL KEDSD---ET bmy_09336T0/1-869 MSEKKGTSEE LEDLTSQFRK ESRSRLVEES GVIKETSNSL KEASD---GT BACU016862/1-448 MSEKKGTSEE LEDLTSQFRK ESRSRLVEES GVIKETSNSL KEASD---GT ENSTTRP00000009796/1-118 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000405987/1-860 SSNQIYETHP RQNTL----- ESTSSSGRKS KRNEEQKKNL QFSET----- ENSBTAP00000033782/1-863 SSNQIYETHP SKNTL----- --ASSSGSKS KKNEEQRKSL QFSETITTYD bmy_09336T0/1-869 TSNQICKARP RKNTLGICDD TSTSSSGSKS KRNEEQRKTL QFSETIATYD BACU016862/1-448 TSNQICKARP RKNTLGICDD TSTSSSGSKS KRNEEQRKTL QFSETIATYD ENSTTRP00000009796/1-118 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000405987/1-860 --STRTGTSQ SLS-SLTGRT AEYQALVNFL SHETVGEVSP QVSEENQKQL ENSBTAP00000033782/1-863 SLQSKTGISQ NSSLSETEMR AEYQAFVDSL SHETLGKISP QLSEENQKGS bmy_09336T0/1-869 SLQSKSEISQ SSSLSVTKMS AEYQAFVDSL THETLEKISP QLSEENQKGL BACU016862/1-448 SLQSKSEISQ SSSLSVTKMS AEYQAFVDSL THETLEKISP QLSEENQKGL ENSTTRP00000009796/1-118 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000405987/1-860 GLGADNFTVN LEAKGLQEFP KDILKIKYVK YLYLDKNQIK TFQGADSGDL ENSBTAP00000033782/1-863 GLPSDNFTIN LKAKGLQEFP KDILKVKYVK YLYLDENEIK SFKGADSRDM bmy_09336T0/1-869 GLGSDNFTVN LKAKGLQEFP KDILKIKYVK YLYLDENEIK SFKGADSSDL BACU016862/1-448 GLGSDNFTVN LKAKGLQEFP KDILKSKYVK YLYLDENEIK SFKGADSSDL ENSTTRP00000009796/1-118 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000405987/1-860 LGLEILSLQE NGLSSLPSEI QLLHNLRILN VSHNHISHIP KEISQLGNIR ENSBTAP00000033782/1-863 LGLEILSIQK NGLSTLPSEI QLLHNLKLLN VSYNQISHIP KEISQLGNIK bmy_09336T0/1-869 LGLEILSMQE NGLSSLPSEI QLLHNLKLLN VSHNQISHIP QEISHLGTIR BACU016862/1-448 LGLEILSMQE NGLSSLPSEI QLLHNLKLLN ---------- ---------- ENSTTRP00000009796/1-118 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000405987/1-860 QLFFYNNYIE NFPSDLECLG NLEILSLGKN KLRHIPDTLP SLKTLRVLNL ENSBTAP00000033782/1-863 ELFLNNNCIE DFPSGLESLK NLEILNLAKN KLRHIPDALS SLKNLRALNL bmy_09336T0/1-869 QLFLNNNCIE DFPSGLESLG NLEILNLAKN KLRHIPDTLS SLKNLRALNL BACU016862/1-448 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009796/1-118 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000405987/1-860 EYNQLTTFPK ALCFLPKLIS LDLTGNLISS LPKEIRELKN LETLLMDHNK ENSBTAP00000033782/1-863 EYNRLTIFPK ALCFLPKLIS LNLTGNLINS LPKEIKELKN LEKLLLDHNK bmy_09336T0/1-869 EYNQLTVFPK ALCFLPKLIL LNLSGNLINS LPKEIKELKN LEILLLDHNK BACU016862/1-448 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009796/1-118 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000405987/1-860 LTFLAVEIFQ LLKIKELQLA DNKLEVISHK IENFRELRIL ILDKNLLKNI ENSBTAP00000033782/1-863 LTFLAVEIFL LLKMKELQLT DNKLEVISNK IENFKELRIL ILDKNLLKDM bmy_09336T0/1-869 LTFLAVEIFQ LLKMKELQLT DNKLEVISHK IENFRELRIL ILDKNLLKDI BACU016862/1-448 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009796/1-118 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000405987/1-860 PEKISCCAML ECLSLSDNKL TELPKYIHKL NNLRKLHVNR NNMVKITDCI ENSBTAP00000033782/1-863 PENISHCAVL ECLSLSDNKL TELPKNIHKL KNLRKLHINR NYLVKIPEYI bmy_09336T0/1-869 PEKISHCVML ECLSLSDNKL TELPKNIHKL KNLRKLHINR NNIVKIPEYI BACU016862/1-448 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009796/1-118 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000405987/1-860 SHLNNICSLE FSGNIITDVP IEIKNCQKII KIELSYNKIM YFPLGLCALD ENSBTAP00000033782/1-863 SHLNNMFSLE FSGNFITDFP IEIKSCKNIA KVELSYNKIM YFPLGLCALD bmy_09336T0/1-869 SHLNNMFSLE FSGNLIADFP IEIKNCRKIT KVELSYNRIM YFPLGLCALD BACU016862/1-448 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009796/1-118 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000405987/1-860 SLYYLSVNGN YISEIPVDIS FSKQLLHLEL SENKLLIFSE HFCSLINLKY ENSBTAP00000033782/1-863 SLHYLSLNGN YISEIPVDIS FNKQLLHLEF NENKLLLFSE HLCSLINLEY bmy_09336T0/1-869 SLYYLGFNGN YISEIPVDIS FSKQLLHLEL NENKLLIFSE HLCSLINLEY BACU016862/1-448 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009796/1-118 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000405987/1-860 LDLGKNQIKK IPASISNMIS LHVLILCCNK FETFPRELCT LENLQVLDLS ENSBTAP00000033782/1-863 LDLGKNKIRK IPPSISNMVS LHVLILCYNK LETFPTEVCT LDNLRVLDLS bmy_09336T0/1-869 LDLGKNKIRK IQPSISNMVS LRVLILCCNK LETFPIEVCT LENLQVLDFS BACU016862/1-448 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009796/1-118 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000405987/1-860 ENQLQKISSD ICNLKGIQKL NFSSNQFIHF PIELCQLQSL EQLNISQIKG ENSBTAP00000033782/1-863 ENQIQTIPSE ICNLKGIQKL NISNNQFIYF PVELCHLQSL EELNISQING bmy_09336T0/1-869 ENQIQTIPSE ICNLKGIQKL NISSNQFIYF PIELCQLQSL EELNISQING BACU016862/1-448 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009796/1-118 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000405987/1-860 RKLTRLPGEL SNMTQLKELD ISNNAIREIP RNIGELRNLV SLHAYNNQIS ENSBTAP00000033782/1-863 KKLTRLPEEL SNMTKLKGLD ISNNAIREMP TNIGELRSLV SLNADNNQIR bmy_09336T0/1-869 RKLTRLPEEL SNMTQLKGLD ISNNAIREMP RNIGELRGLV SLNAYNNQIR BACU016862/1-448 --LTRLPEEL SNMTQLKGLD VSNNAIREMP RNIGELRGLV SLNAYNNQIR ENSTTRP00000009796/1-118 ---------- --MTQLKGLD ISNNEIREMP RNIGELRGLV SLNAYNNQIR 701 750 ENSP00000405987/1-860 YLPPSLLSLN DLQQLNLSGN NLTALPSAIY NIFSLKEINF DDNPLLRPPV ENSBTAP00000033782/1-863 YLPSSFLSLN ALQQLNLSGN NLSVLPSGIY NLFSLKEINF DDNPLLRPPM bmy_09336T0/1-869 YLPPSFLSLN ALQQLNLSGN NLTALPSGIY NLFSLKEINF DDNPLLRPPM BACU016862/1-448 YLPPSFLSLN ALQQLNLSGN NLTALPSGIY NLFSLKEINF DDNPLLRPPM ENSTTRP00000009796/1-118 YLPPSFLSLN ALQQLNLSGN NLTALPSGIY KLFSLKEINF DDNPLLRPPV 751 800 ENSP00000405987/1-860 EICKGKQLYT IARYLQRADE RDEKILEKIF KIVANNITET NFEFLCQKLN ENSBTAP00000033782/1-863 EICKGKQLYT IARYLQRADE RDEKILAKIF KIVAKNITET HFQFLCQKLN bmy_09336T0/1-869 EICKGKQLYT IAHYLQRADE RDEKILAKIF KIIANNITET NFQFLCQKLN BACU016862/1-448 EICKGKQLYT VARYLQRADE RDEKILAKIF KIIANNITET NFQFLCQKLN ENSTTRP00000009796/1-118 EICKEKQLCT IACYLQRADE RDGR------ ---------- ---------- 801 850 ENSP00000405987/1-860 LANSETDMPT KSTVSLSERA HQALVIWKTQ SNKLSLTAAA LRDQLIRALT ENSBTAP00000033782/1-863 LTISESDKSA LSTVSLSERV HQVLDKWKME KNNLSVTTAA LRDQLTRALT bmy_09336T0/1-869 LAITETDKST -TTVSLSERV HRTLDKWKME NNNLSVTTAA LRDQLTRALT BACU016862/1-448 LAITETDKST MSTVSLSERV HRTLDKWKME NNNLSVTTAA LRDQLTRALT ENSTTRP00000009796/1-118 ---------- ---------- ---------- ---------- ---------- 851 900 ENSP00000405987/1-860 MIGAYEIMDK ITALNLFTRA IKF ENSBTAP00000033782/1-863 MIGAYEIMDK ITALKLFSCA IKF bmy_09336T0/1-869 MIGAYEIMDK ITALKLFTCA IKF BACU016862/1-448 MIGAYEIMDK ITALKLFTCA IKF ENSTTRP00000009796/1-118 ---------- ---LRIYIQ- ---