KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:43:44 2014 Check: 00 .. Name: ENSP00000356370/1-1406 Len: 1408 Check: 2889 Weight: 1.00 Name: ENSBTAP00000033786/1-1408 Len: 1408 Check: 1933 Weight: 1.00 Name: ENSTTRP00000008249/1-1405 Len: 1408 Check: 1427 Weight: 1.00 Name: bmy_18027T0/1-1292 Len: 1408 Check: 8072 Weight: 1.00 Name: BACU001712/1-1406 Len: 1408 Check: 4299 Weight: 1.00 // 1 50 ENSP00000356370/1-1406 MALKNINYLL IFYLSFSLLI YIKNSFCNKN NTRCLSNSCQ NNSTCKDFSK ENSBTAP00000033786/1-1408 MALRTVNHRL LLCLSLSLLI SIKSSFCNKN DTKCLSDSCQ KNSTCKDFSK ENSTTRP00000008249/1-1405 MALQTVTHLL IFCLSLSLLI SIKNSLCNKN DTKCLSDSCQ NNSTCKNFSK bmy_18027T0/1-1292 ---------- ---------- MISDSFCNKN DTKCLSTSCH NDSTCKDFSK BACU001712/1-1406 MALQTVAHLL TFCLSLSLLI SVKNSFCNKN DTKCLSTSCQ NDSTCKDFSK 51 100 ENSP00000356370/1-1406 DNDCSCSDTA NNLDKDCDNM KDPCFSNPCQ GSATCVNTPG ERSFLCKCPP ENSBTAP00000033786/1-1408 DKSCRCSDTA VHGDKDCGEE EDPCLSSPCP GHATCARVPG ERRSRCRCPP ENSTTRP00000008249/1-1405 DGSCHCSGTA INLDKDCDHE EDACFSSPCP GNATCVSVPG ERRFLCRCPP bmy_18027T0/1-1292 DGSCHCSGTA INLDKDCDHE KDPCFSSPCP GNATCVSAPG ERRVLCRCPP BACU001712/1-1406 DSSCHCSGTA INLDKDCDHE KDPCFSSPCP GNATCVSAPG ERRVLCRCPP 101 150 ENSP00000356370/1-1406 GYSGTICETT IGSCGKNSCQ HGGICHQDPI YPVCICPAGY AGRFCEIDHD ENSBTAP00000033786/1-1408 GHSGAGCDTA AGPCGPRSCL HGGVCHQDPG PPVCVCPAGY AGRFCELDLD ENSTTRP00000008249/1-1405 GYSGTTCDTA IAPCGTNSCQ HGGFCHQDPV HPVCICPAGY AGRFCELEHD bmy_18027T0/1-1292 GYSGTTCDTA IAPCGTNSCQ HGGFCHQDPV RPVCICPVGY AGRFCELDHD BACU001712/1-1406 GYSGTTCNTA IAPCGTNSCQ HGGFCHQDPV HPVCICPAGY AGRFCELDHD 151 200 ENSP00000356370/1-1406 ECASSPCQNG AVCQDGIDGY SCFCVPGYQG RHCDLEVDEC ASDPCKNEAT ENSBTAP00000033786/1-1408 ECASSPCLHG AMCQDRGDGY SCFCVPGYQG RHCDVEVDEC VSEPCRNAAT ENSTTRP00000008249/1-1405 ECASSPCHNG AVCQDGINGY SCFCVPGYQG RHCDLEVDEC VSDPCKNEAT bmy_18027T0/1-1292 ECASSPCHNG AVCRDGINGY SCFCVPGYQG RHCDLEVDEC VSEPCKNEAT BACU001712/1-1406 ECASSPCHNG AVCQDGINGY SCFCVPGYQG RHCDLEVDEC VSEPCKNEAT 201 250 ENSP00000356370/1-1406 CLNEIGRYTC ICPHNYSGVN CELEIDECWS QPCLNGATCQ DALGAYFCDC ENSBTAP00000033786/1-1408 CLNEIGRYTC LCPRGFSGVN CELEVDECWS QPCLNGATCR DAAGAYFCDC ENSTTRP00000008249/1-1405 CLNEIGRYTC ICPHDYSGVX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_18027T0/1-1292 CLNEIGRYTC ICPHDYSGVN CELEVDECRS QPCLSGATCQ DAVEAHFCDC BACU001712/1-1406 CLNEIGRYTC ICPHDYSGVN CELEVDECRS QPCVSGATCQ NAVEARFCDC 251 300 ENSP00000356370/1-1406 APGFLGDHCE LNTDECASQP CLHGGLCVDG ENRYSCNCTG SGFTGTHCET ENSBTAP00000033786/1-1408 APGFLGDHCE LNTDECASGP CLHGGLCVDG ANRYSCTCAG SGFTGTRCET ENSTTRP00000008249/1-1405 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXYSCNCMG SGFTGTHCET bmy_18027T0/1-1292 APGFLGDGCE LSTDECASGP CLHGGLCVDG ANSY------ ---------T BACU001712/1-1406 APGLLGDGCE LSTDECASGP CLHGGLCVDG ANRYSCNCMG SGFTGTHCET 301 350 ENSP00000356370/1-1406 LMPLCWSKPC HNNATCEDSV DNYTCHCWPG YTGAQCEIDL NECNSNPCQS ENSBTAP00000033786/1-1408 LLPPCWSEPC HNNAICEDSA DRYTCRCRPG YTGAQCETDL DGCGSGPCQA ENSTTRP00000008249/1-1405 LMPPCWSKPC HNNATCEDSA DNYTCHCWPG YTGAQCETDI DECSSSPCQS bmy_18027T0/1-1292 QMILQWHESS RLET------ ---------G YTGAQCETDI DGCSSSPCQS BACU001712/1-1406 LMPPCWSKPC HNNATCEDSA DNYTCHCWPG YTGAQCETDI DGCSSSPCQS 351 400 ENSP00000356370/1-1406 NGECVELSSE KQYGRITGLP SSFSYHEASG YVCICQPGFT GIHCEEDVNE ENSBTAP00000033786/1-1408 GGRCVELSSE TGRERLARLL SASRRPEASG YVCICPPGLT GVHCEEDVDE ENSTTRP00000008249/1-1405 DGECVELSSG EGHGRLAQLL SLSGHPEASG YICICPPGLT GVHCEEDVDE bmy_18027T0/1-1292 DGECVELSSG EGHGRLAQLL SLSGRPEASG YICICPPGLT GVHCEEDVDE BACU001712/1-1406 DGECVELSSG EGHGRLAQLL SLSGRPEASG YICICPPGLT GVHCEEDVDE 401 450 ENSP00000356370/1-1406 CSSNPCQNGG TCENLPGNYT CHCPFDNLSR TFYGGRDCSD ILLGCTHQQC ENSBTAP00000033786/1-1408 CLSSPCRNGG TCENSPEGYT CHCPFDPHSG VFFGGRDCSD ILLGCADHPC ENSTTRP00000008249/1-1405 CSSSPCQNGG TCENLPGTYT CRCPFDNHSG AFYGGRNCSD LLLSCTDHPC bmy_18027T0/1-1292 CSSSPCQNGG TCENLPGTYT CRCPFDNRSG AFYGGRDCSD LLLSCTDHPC BACU001712/1-1406 CSSSPCQNGG TCENLPGTYT CRCPFDNRSG AFYGGRDCSD LLLSCTDHAC 451 500 ENSP00000356370/1-1406 LNNGTCIPHF QDGQHGFSCL CPSGYTGSLC EIATTLSFEG DGFLWVKSGS ENSBTAP00000033786/1-1408 LNNGTCVPHV HDGQHGFDCL CPPGYTGSRC GTVTTLSFLG SGFLWVSSGS ENSTTRP00000008249/1-1405 LNNGTCVPHL HNGQHGFGCL CPSGYTGSRC ETVTTLSFEG DGFLWVPSGS bmy_18027T0/1-1292 LNNGTCIPHI RNDQHGFGCL CPSGYTGSRC ETVTTLSFEG DGFLWVPSGS BACU001712/1-1406 LNNGTCIPHI HNGRHGFGCL CPSGYTGSRC ETVTTLSFEG DGFLWVPSGS 501 550 ENSP00000356370/1-1406 VTTKGSVCNI ALRFQTVQPM ALLLFRSNRD VFVKLELLSG YIHLSIQVNN ENSBTAP00000033786/1-1408 ALAQDSGCTV ALRFQTVQPA ALLLFRGDRD VFVMLEVLAG FVHLTVQVSD ENSTTRP00000008249/1-1405 VTAKDSGCTI ALRFQTVQPV ALLLFRGDRD VFVVLELLSG YVHLSVQVRD bmy_18027T0/1-1292 VTAKDSGCKI ALSFQTVQPV ALLLFRGDRD VFVILELLSG YVHLSIQVRD BACU001712/1-1406 VTAKDSSCKI ALRFQTVQPV ALLLFRGDRD MFVILELLSG YVHLSIQVRD 551 600 ENSP00000356370/1-1406 QSKVLLFISH NTSDGEWHFV EVIFAEAVTL TLIDDSCKEK CIAKAPTPLE ENSBTAP00000033786/1-1408 RPKVVLLIPH DTSDGGWHAV EATFAEAVTL ALRDDSCMGT CVARAPSPFE ENSTTRP00000008249/1-1405 QPKVVLFISH STSDGEWHAV EVTFAEAVTL ALLDESCLGT CITRAPSPFG bmy_18027T0/1-1292 QPEVVLFISH NTSDGEWHAV EVTFAEAVSL ALLDESCLGT CITRAPSPFG BACU001712/1-1406 QPEVVLFISH NTSDGEWHAV EVTFAEAVTL ALLDESCLGT CITRAPSPFG 601 650 ENSP00000356370/1-1406 SDQSI-CAFQ NSFLGGLPVG MTSNGVALLN FYNMPSTPSF VGCLQDIKID ENSBTAP00000033786/1-1408 SDGSSACALQ NSFLGGLPEG RAHSGDALLN VYRIPSAPSL VGCLQDVHLD ENSTTRP00000008249/1-1405 SDGST-CALQ NSFLGGLPEG TAHSGVALLN VYNRPSXXXX XXXXXXXXXX bmy_18027T0/1-1292 SDGST-CALQ NSFLGGLPEG TVHSGVALLN VYNRPSIPSL VGCLQDVHLD BACU001712/1-1406 SDGST-CALQ NSFLGGLPEG TAHSDVALLN VYNRPSIPSL VGCLQDVHLD 651 700 ENSP00000356370/1-1406 WNHITLENIS SGSSLNVKAG CVRKDWCESQ PCQSRGRCIN LWLSYQCDCH ENSBTAP00000033786/1-1408 SNAITAENVS SDQSLNVKAG CARKDWCESQ PCRNRGRCLN LWLGHRCECY ENSTTRP00000008249/1-1405 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_18027T0/1-1292 SNPITPENIS ---------- ---------- ---------- ----YQCDCY BACU001712/1-1406 SNPITPENIS SGWSLNVKAG CTRKDWCESQ PCHNRGRCLN LWLSYQCDCY 701 750 ENSP00000356370/1-1406 RPYEGPNCLR EYVAGRFGQD DSTGYVIFTL DESYGDTISL SMFVRTLQPS ENSBTAP00000033786/1-1408 RPYRGRSCHG EYVAGRFGQD DSPGYAVFHL NKDYEEDLTL SMFVRTRRPT ENSTTRP00000008249/1-1405 XXXXXXXXXX XYVAGRFGQD DSTGYAAFHL DKSYGEAFTL SMFVRTHRPS bmy_18027T0/1-1292 RPYQGRSCHR AYVAGRFGQD DSTGYAAFHL DKSYGEAFTL SMFVRTHRPS BACU001712/1-1406 RPYRGRSCHR AYVAGRFGQD DSTGYAAFHL DKSYGEAFTL SMFVRTHRPS 751 800 ENSP00000356370/1-1406 GLLLALENST YQYIRVWLER GRLAMLTPNS PKLVVKFVLN DGNVHLISLK ENSBTAP00000033786/1-1408 GLLLALGNGT YQYLRVWLEH GRLAMLTPGS PKLLVTFVLS DGNVRLVSLK ENSTTRP00000008249/1-1405 GLLLALENGT CQYIRVWLEH GRLAMLTPGS PKSLVKFVLS DGNVHLISLK bmy_18027T0/1-1292 GLLLALENGT CQYIRVWLEH GRLAMLTPGS PKSLVRFVLS DGNVRLISLK BACU001712/1-1406 GLLLALENGT CQYIRVWLEH GRLAMLTPGS PKSLVKFVLS DGNVHLISLK 801 850 ENSP00000356370/1-1406 IKPYKIELYQ SSQNLGFISA STWKIEKGDV IYIGGLPDKQ ETELNGGFFK ENSBTAP00000033786/1-1408 IKPNKIELYE SSQNLGFLSA PTWKLQRGDV LYVGGLPDRR ETEVSGGFFK ENSTTRP00000008249/1-1405 IKPNRIELYQ SS-NLRFISA XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_18027T0/1-1292 IKPNRIELYQ SSQNLGFISA PTWRLQRGDV LYIGGLPDRQ ETEVNGGFFK BACU001712/1-1406 IKPNRIELYQ SSQNLGFISA PTWRLQRGDV LYIGGLPDRQ ETEVNGGFFK 851 900 ENSP00000356370/1-1406 GCIQDVRLNN QNLEFFPNPT NNASLNPVLV NVTQGCAGDN SCKSNPCHNG ENSBTAP00000033786/1-1408 GCIQDMRLNN ENLEFFPNPT SSAAHNAVLV NVTEGCPGDN LCEPNPCHHG ENSTTRP00000008249/1-1405 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXPNPCHNG bmy_18027T0/1-1292 GCIQDIRLNN ENLEFFPNSM SNAAQDAVLV NVTQGCPGDN LCEPNPCHNG BACU001712/1-1406 GCIQDIRLNN ENLEFFPNST SNAAQDAVLV NVTQGCPGDN LCEPNPCHNG 901 950 ENSP00000356370/1-1406 GVCHSRWDDF SCSCPALTSG KACEEVQWCG FSPCPHGAQC QPVLQGFECI ENSBTAP00000033786/1-1408 GICYPLWDDF SCSCPVNTAG KACQELRWCE LGPCPPGAQC LRLPRGFECI ENSTTRP00000008249/1-1405 GICYSLWDDF SCSCPANTAG KACQEVRWCE LSPCPPRAQC QGLPRGFECI bmy_18027T0/1-1292 GICHSLWDDF SCSCPASTAG KACQEVRWCE LSPCPPRAQC QAVPRGFECI BACU001712/1-1406 GICHSLWDDF SCSCPASTAG KACQEVRWCE LSPCPPRAQC QAVPRGFECI 951 1000 ENSP00000356370/1-1406 ANAVFNGQSG QILFRSNGNI TRELTNITFG FRTRDANVII LHAEKEPEFL ENSBTAP00000033786/1-1408 ANAVFNGQSR EIIFRSNGNI TRELTNVTFG FRTRDAHAII LHAEKEPEFL ENSTTRP00000008249/1-1405 ANAVFNGQSS EILFRSNGNI TRELTNITFG FRTRDANAII LHAEKEPEFL bmy_18027T0/1-1292 ANAVFNGQSS EILFRSNGNI TRELTNITFG FRTRDTNAII LHAEKEPEFL BACU001712/1-1406 ANAVFNGQSS EILFRSNGNI TRELTNITFG FRTRDANAII LHAEKEPEFL 1001 1050 ENSP00000356370/1-1406 NISIQDSRLF FQLQSGNSFY MLSLTSLQSV NDGTWHEVTL SMTDPLSQTS ENSBTAP00000033786/1-1408 RIHIQDSRLL FQLRSGNSFY TLSLTSLQPV SDGVWYQVTI SMTDPGAQAS ENSTTRP00000008249/1-1405 NISIRDSQLL FQLQSGNSFY MLSLTSLQSV NDGAWHQVTL SMTDPRAQAS bmy_18027T0/1-1292 NISIRDSQLL FQLQSGNSFY MLSLTSLQSV NDGVWHQVTL SMTDPRAQTS BACU001712/1-1406 NISIRDSQLL FQLQSGNSVY MLSLTSLQSV SDGVWHQVTL SMTDPRAQAS 1051 1100 ENSP00000356370/1-1406 RWQMEVDNET PFVTSTIATG SLNFLKDNTD IYVGDRAIDN IKGLQGCLST ENSBTAP00000033786/1-1408 RWQMEVDGQT PPVTSAVAAG SLSFLKDDTD VYVGDRASDS TRALRGCLST ENSTTRP00000008249/1-1405 RWQMEVDQQT PLVTSAVATG SLSFLKDDIN IYVGERASDN TQGLRGCLST bmy_18027T0/1-1292 RWQMEVDQRT PLVTSAVATG SLNFLKDDTN IYVGERASDN TQGLRGCLST BACU001712/1-1406 RWQMQVDQRT PLVTSAVATG SLNFLKDDIN IYVGERASDN TQGLRGCLST 1101 1150 ENSP00000356370/1-1406 IEIGGIYLSY FENVHGFINK PQEEQFLKIS TNSVVTGCLQ LNVCNSNPCL ENSBTAP00000033786/1-1408 IAISGLYLSY FENVRGLMNR PQEERFLKVS RPPVETGCLQ LDACRSGPCL ENSTTRP00000008249/1-1405 IEISGIYLSY FENVHGFINK PQEEQFLKIS IHPVVTGCLQ LNACNSNPCL bmy_18027T0/1-1292 IEISGIYLSY FENVHGFINK PQEEQFLKIS VHPVVTGCLQ LNACSSDPCS BACU001712/1-1406 IEISGIYLSY FENVHGFIRK PQEEQFLKIS LHPVVTGCLQ LNACNPDPCS 1151 1200 ENSP00000356370/1-1406 HGGNCEDIYS SYHCSCPLGW SGKHCELNID ECFSNPCIHG NCSDR-VAAY ENSBTAP00000033786/1-1408 HGGRCEDTYS SHRCTCPAGR SGPHCEFHVD ECLSSPCIHG NCSAPGGTAY ENSTTRP00000008249/1-1405 HGGHCEDTYS SHHCTCPVGW SGAHCELDID ECLSNPCIHG NCSDR-VAGY bmy_18027T0/1-1292 HGGHCEDTYS SHHCTCPVGW SGAHCELDID ECLSNPCIHG NCSDR-VAGY BACU001712/1-1406 HGGRCEDTYS SHHCTCPVGW SGAHCELDID ECLSNPCIHG NCSDR-AAGY 1201 1250 ENSP00000356370/1-1406 HCTCEPGYTG VNCEVDIDNC QSHQCANGAT CISHTNGYSC LCFGNFTGKF ENSBTAP00000033786/1-1408 HCRCEPGFTG VNCESEVDHC QHHQCANGAT CVSDANGYSC RCPGNFTGRF ENSTTRP00000008249/1-1405 RCRCEPGYTG VNCESDVDNC QSHLCANGAT CVSDTSGYSC RCPGNFTGKF bmy_18027T0/1-1292 RCRCEPGYTG VNCESDVDNC QSHLCANGAT CVSDASGYSC HCPGNFTGKF BACU001712/1-1406 HCRCEPGYTG VNCESDVDNC QSHLCANGAT CVSDASGYSC RCPGNFTGRF 1251 1300 ENSP00000356370/1-1406 CRQSRLPSTV CGNEKTNLTC YNGGNCTEFQ TELKCMCRPG FTGEWCEKDI ENSBTAP00000033786/1-1408 CRYLRLPSTV CGNEKANLTC YNGGNCTAFQ GEMKCACGPG FTGERCDKDI ENSTTRP00000008249/1-1405 CRYTRLPSAV CGNEKTNLTC YNGGNCTEFQ GEVKCVCWPG FTGEWCEKDI bmy_18027T0/1-1292 CRYTRLPSAV CGNEKTNLTC YNGGNCSEFQ GEVKCVCWPG FTGEWCEKDI BACU001712/1-1406 CRYTRLPSAV CGNEKTNLTC YNGGNCSEFQ GEVKCVCWPG FTGEWCEKDI 1301 1350 ENSP00000356370/1-1406 DECASDPCVN GGLCQDLLNK FQCLCDVAFA GERCEVDLAD DLISDIFTTI ENSBTAP00000033786/1-1408 DECASDPCLH GGRCHDLLNG FRCVCALAFA GPRCELDLAD DLLSDVFTTI ENSTTRP00000008249/1-1405 DECASDPCLN GGQCHDLLNK FQCVCDLAFA GTRCELDLAD DLLSDVFAAI bmy_18027T0/1-1292 DECASNPCLN GGQCHDLLNK FQCVCDLAFA GARCELDVSG LSF---YVSL BACU001712/1-1406 DECASDPCLN GGQCHDLLNK FQCVCDLAFA GARCELDLAD DLLSDVFASI 1351 1400 ENSP00000356370/1-1406 GSVTVALLLI LLLAIVASVV TSNKRATQGT YSPSRQEKEG SRVEMWNLMP ENSBTAP00000033786/1-1408 GSVTLALLLI LFLAVVASVL ASNKRATQGS YSPSRQEKDS SRVEMWSVMD ENSTTRP00000008249/1-1405 GSVTLALLLI LFLAVVASVV ASNKRATQGS YSPSRQEKDG SRVEMWSMTA bmy_18027T0/1-1292 LLWQNLFQLL SYLILRMSDE PVVEWGEQDD Y--------- ---------- BACU001712/1-1406 GSVTLALLLI LFLAVVASVV AANKRATQGS YSPSRQEKDG SRVEMWSMTS 1401 1450 ENSP00000356370/1-1406 PPAMERLI ENSBTAP00000033786/1-1408 APAAERLI ENSTTRP00000008249/1-1405 PPAMERLI bmy_18027T0/1-1292 -------- BACU001712/1-1406 PPAMERLI