KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:43:54 2014 Check: 00 .. Name: ENSBTAP00000033821/1-1022 Len: 1110 Check: 2936 Weight: 1.00 Name: ENSP00000360552/1-1034 Len: 1110 Check: 6182 Weight: 1.00 Name: ENSTTRP00000005474/1-1022 Len: 1110 Check: 9288 Weight: 1.00 Name: bmy_00258T0/1-1109 Len: 1110 Check: 3149 Weight: 1.00 Name: BACU011315/1-943 Len: 1110 Check: 3021 Weight: 1.00 // 1 50 ENSBTAP00000033821/1-1022 ---------- ---G------ ---------- ---------- ---------- ENSP00000360552/1-1034 MPRRKQQAPK RAAG------ ---------- ---------- ---------- ENSTTRP00000005474/1-1022 MPRRKQQAPK RAAG------ ---------- ---------- ---------- bmy_00258T0/1-1109 MTEAGQVRSE ASGGQTDQTV DKVSEPRKLS IASYGPTEPS ALPHEYLINF BACU011315/1-943 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000033821/1-1022 ---------- ---------- ---------- ---------Y AQEEQLKEEE ENSP00000360552/1-1034 ---------- ---------- ---------- ---------Y AQEEQLKEEE ENSTTRP00000005474/1-1022 ---------- ---------- ---------- ---------Y AQEEQLKEEE bmy_00258T0/1-1109 KYKPNHTVAR DDKCQVFFIA KLNLNGSVQS YISSDFKGSY AQEEQLKEEE BACU011315/1-943 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000033821/1-1022 EIKEEEEEEE DSGSGAQPQG SNDAGTDEEL ETGPEQKGCF SYQNSPGSHL ENSP00000360552/1-1034 EIK-EEEEEE DSGSVAQLQG GNDTGTDEEL ETGPEQKGCF SYQNSPGSHL ENSTTRP00000005474/1-1022 EIK-EEEEEE DSGSVAQLQG SNDPGTDEEL ETGPEQKGCF SYQNSPGSHL bmy_00258T0/1-1109 EIK-EEEEEE DSGSVAQLQG SNDPGTDEEL ETGPEQKGCF SYQNSPGSHL BACU011315/1-943 ---------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000033821/1-1022 SNQDAENESL LSDASDQVSD IKSVCGRDAS DKKASVHPKL PNEAHSCMDK ENSP00000360552/1-1034 SNQDAENESL LSDASDQVSD IKSVCGRDAS DKKAHTHVRL PNEAHNCMDK ENSTTRP00000005474/1-1022 SNQDAENESL LSDASDQVSD IKSVCGRDAL DKKASVHPKL PNEAHSCMDK bmy_00258T0/1-1109 SNQDAENESL LSDASDQVSD IKSVCGRDAL DKKASVHPKL PNEAHSCMDK BACU011315/1-943 ---------- -------MSD VKSVCGRDAL DRKASVHAKL PNEAHSCMDK 201 250 ENSBTAP00000033821/1-1022 MTAVYANILS DSYWSGLGLG FKLSNSERRN CDTRNGGNKT DFDWHQDALS ENSP00000360552/1-1034 MTAVYANILS DSYWSGLGLG FKLSNSERRN CDTRNGSNKS DFDWHQDALS ENSTTRP00000005474/1-1022 MTAVYANILS DSYWSGLGLG FKLSNSERRN CDPRNGSNKT DFDWHQDALS bmy_00258T0/1-1109 MTXVYANILS DSYWSGLGLG FKLSNSERRN CDPRNGSNKT DFDWHQDALC BACU011315/1-943 MTAVYANILS DSYWSGLGLG FKLSNSERRN CDPRNGSNKT DFDWHQDALS 251 300 ENSBTAP00000033821/1-1022 KSLQQNLPSR SVSKPSLFSS VQLYRQSSKM CGTVFTGASR FRCRQCSAAY ENSP00000360552/1-1034 KSLQQNLPSR SVSKPSLFSS VQLYRQSSKM CGTVFTGASR FRCRQCSAAY ENSTTRP00000005474/1-1022 KSLQQNLPSR SVSKPSLFSS VQLYRQSSKM CGTVFTGASR FRCRQCSAAY bmy_00258T0/1-1109 KSLQQNLPSR SVSKPSLFSS VQLYRQSSKM CGTVFTGASR FRCRQCSAAY BACU011315/1-943 KSLQQNLPSR SVSKPSLFSS VQLYRQSSKM CGTVFTGASR FRCRQCSAAY 301 350 ENSBTAP00000033821/1-1022 DTLVELTVHM NETGHYQDDN RKKDKLRPTS YSKPRKRAFQ DMDKEDAQKV ENSP00000360552/1-1034 DTLVELTVHM NETGHYQDDN RKKDKLRPTS YSKPRKRAFQ DMDKEDAQKV ENSTTRP00000005474/1-1022 DTLVELTVHM NETGHYQDDN RRKDKLRPTS YSKPRKRAFQ DMDKEDAQKV bmy_00258T0/1-1109 DTLVELTVHM NETGHYQDDN RKKDKLRPTS YSKPRKRAFQ DMDKEDAQKV BACU011315/1-943 DTLVELTVHM NETGHYQDDN RKKDKLRPTS YSKPRKRAFQ DMDKEDAQKV 351 400 ENSBTAP00000033821/1-1022 LKCMFCGDSF DSLQDLSVHM IKTKHYQKVP LKEPVPTISS KMVTPAKKRV ENSP00000360552/1-1034 LKCMFCGDSF DSLQDLSVHM IKTKHYQKVP LKEPVPTISS KMVTPAKKRV ENSTTRP00000005474/1-1022 LKCMFCGDSF DSLQDLSVHM IKTKHYQKVP LKEPVPTISS KMVTPAKKRI bmy_00258T0/1-1109 LKCMFCGDSF DSLQDLSVHM IKTKHYQKVP LKEPVPTISS KMVTPAKKRI BACU011315/1-943 LKCMFCGDSF DSLQDLSVHM IKTKHYQKVP LKEPVPTISS KMVTPAKKRI 401 450 ENSBTAP00000033821/1-1022 FDVNRPCSPD STTGSFADSF PPQKNANLQL SCNNRYGYQN GASYTWQFEA ENSP00000360552/1-1034 FDVNRPCSPD STTGSFADSF SSQKNANLQL SSNNRYGYQN GASYTWQFEA ENSTTRP00000005474/1-1022 FDINRPCSPD STTGSFADSF PSQKNANLQL SSNNRYGYQN GASYTWQFEA bmy_00258T0/1-1109 FDINRPCSPD STTGSFADSF PSQKNANLQL SSNNRYGYQN GASYTWQFEA BACU011315/1-943 FDINRPCSPD STTGSFADSF PSQKNANTQL SSSNRYGYQN GASYTWQFEA 451 500 ENSBTAP00000033821/1-1022 CKSQILKCME CGSSHDTLQQ LTTHMMVTGH FLKVTSSASK KGKQLVLDPL ENSP00000360552/1-1034 CKSQILKCME CGSSHDTLQQ LTTHMMVTGH FLKVTSSASK KGKQLVLDPL ENSTTRP00000005474/1-1022 CKSQILKCME CGSSHDTLQQ LTTHMMVTGH FLKVTSSASK KGKQLVLDPL bmy_00258T0/1-1109 CKSQILKCME CGSSHDTLQQ LTTHMMVTGH FLKVTSSASK KGKQLVLDPL BACU011315/1-943 CKSQILKCME CGSSHDTLQQ LTTHMMVTGH FLKVTSSASK KGKQLVLDPL 501 550 ENSBTAP00000033821/1-1022 AVEKMQSLSD APNSDALAPK PSSNSASDAA ASSTELKKDS KKEKPEEINK ENSP00000360552/1-1034 AVEKMQSLSE APNSDSLAPK PSSNSASDCT ASTTELKKES KKERPEETSK ENSTTRP00000005474/1-1022 AVEKMQSLSD APNSDSLAPK PSSNSASDCT ASTTELKRES KKEKPEPINK bmy_00258T0/1-1109 AVEKMQSLSD APNSDSLAPK PSSNSASDCT ASTTELKRES KQEKAEQIDK BACU011315/1-943 AVEKMQSLSD APNSDSLAPK PSSNSAADCT ASTTELKRES KKEKAEQINK 551 600 ENSBTAP00000033821/1-1022 DEKVMKSEDY EDPLQKPLDP TIKYQYLREE DLEDGSKGGG DILKSLENTV ENSP00000360552/1-1034 DEKVVKSEDY EDPLQKPLDP TIKYQYLREE DLEDGSKGGG DILKSLENTV ENSTTRP00000005474/1-1022 DEKVVKSEDC KDPLQKPLDP TIKYQYLREE DLEDGSKGGG DILKSLENTV bmy_00258T0/1-1109 DEKVMKSEDY EDPLQKPLDP TIKYQYLREE DLEDGSKGGG DILKSLENTV BACU011315/1-943 DEKVMKNEDY EDPLQKPLDP TIKYQYLREE DLEDGSKGGG DILKSLENTV 601 650 ENSBTAP00000033821/1-1022 TTAINKAQNG APSWSAYPSI HAAYQLSEGT KPSLPMGSQV LQIRPNLSNK ENSP00000360552/1-1034 TTAINKAQNG APSWSAYPSI HAAYQLSEGT KPPLPMGSQV LQIRPNLTNK ENSTTRP00000005474/1-1022 TTAINKAQNG APSWSAYPSI HAAYQLSEGT KPSLPMGSQV LQIRPNLSNK bmy_00258T0/1-1109 TTAINKAQNG APSWSAYPSI HAAYQLSEGT KPALPMGSQV LQIRPNLTNK BACU011315/1-943 TTAINKAQNG APSWSAYPSI HAAYQLSEGT KPALPMGSQV LQIRPNLTNK 651 700 ENSBTAP00000033821/1-1022 LRPIAPKWKV MPLVSVPAHL APYTQVKKEL TDKEEAVREC GKESPCEEAS ENSP00000360552/1-1034 LRPIAPKWKV MPLVSMPTHL APYTQVKKES EDKDEAVKEC GKESPHEEAS ENSTTRP00000005474/1-1022 LRPIAPKWKV MPLVSVPTSL TPYTQVKKEP DDKDEVVKEC GKESPQEEAS bmy_00258T0/1-1109 LRPIAPKWKV MPLVSVPTSL APYTQVKKEP EDRDEVVKEC GKESPHEEAS BACU011315/1-943 LRPIAPKWKV MPLVSVPTSL APYTQVKKEP EDKDEVVKEC GKESPHEEAS 701 750 ENSBTAP00000033821/1-1022 SFSHSEGHAF CKSEPPAESK KVEPRPPKEE DKLMREGSEK EKAPALEPAS ENSP00000360552/1-1034 SFSHSEGDSF RKSETPPEAK KTELGPLKEE EKLMKEGSEK EKPQPLEPTS ENSTTRP00000005474/1-1022 SFSHSEGDSF SKCEPPSESK KAEPCPLKEE DKLMKEGGEK RESQPAASPS bmy_00258T0/1-1109 SCSHSEGDSF SKCEPPSESK KAEPCPLKEE DKRRKEGGEK EKPQPLEPAS BACU011315/1-943 SFSHSEGDSF SKCEPPSESK KAEPCPLKEE DKRMKEGGEK EKPQPLEPAS 751 800 ENSBTAP00000033821/1-1022 PLSNGCAIAN PAAALPGINP LSALQSVLNN HLGKATEPLR TPSCSSPSSS ENSP00000360552/1-1034 ALSNGCALAN HAPALPCINP LSALQSVLNN HLGKATEPLR SPSCSSPSSS ENSTTRP00000005474/1-1022 S----CA--- -ASARLCI-P LSA--QSVNN H-GKATEPLR SPSCSSPSSS bmy_00258T0/1-1109 SLSNGCALAH HASALPCVSP LSALQSVLNI HLGEATEPLR SPSRASPSAS BACU011315/1-943 SLSNGCALAN HASALPCINP LSALQSVLNN HLGKATEPLR SPSCSSPSSS 801 850 ENSBTAP00000033821/1-1022 TMSMFHKPSL SVMDKPVLSP PSTRPASVSR RYLFENNDQP IDLTKSKSKK ENSP00000360552/1-1034 TISMFHKSNL NVMDKPVLSP ASTRSASVSR RYLFENSDQP IDLTKSKSKK ENSTTRP00000005474/1-1022 TMSMFHKSNL SVMDKPVLSP VSTRPASVSR RYLFESNDQP IDLTKSKSKK bmy_00258T0/1-1109 AMATFRKSHL SVTDKPVLSP VSTRPASVSR RYLFENSDQP IDLTKSKSKK BACU011315/1-943 TMSMFHKSHL SVMDKPVLSP VSARPASVSR RYLFENSDQP IDLTKSKSKK 851 900 ENSBTAP00000033821/1-1022 AESSQAQSCT SPPQKHALSD IADMVKVLPK ATTPKPATSP RVPPVKLEMD ENSP00000360552/1-1034 AESSQAQSCM SPPQKHALSD IADMVKVLPK ATTPKPASSS RVPPMKLEMD ENSTTRP00000005474/1-1022 AESSQAQSCT SPPQKHALSD IADMVKVLPK ATTPKPAASS RVPPVKLEMD bmy_00258T0/1-1109 AESSQAQSCT SPPQKHALSD IADMVKVLPK ATTPKPAASS RVPPVKLEME BACU011315/1-943 AESSQAQSCT SPPQKHALSD IADMVKVLPK ATTPKPAASS RVPPVKLEME 901 950 ENSBTAP00000033821/1-1022 VRRFEDVSSE VSTLHKRKGR QSNWNPQHLL ILQAQFASSL FQTSEGKYLL ENSP00000360552/1-1034 VRRFEDVSSE VSTLHKRKGR QSNWNPQHLL ILQAQFASSL FQTSEGKYLL ENSTTRP00000005474/1-1022 VRRFEDVSSE VSTLHKRKGR QSNWNPQHLL ILQAQFASSL FQTSEGKYLL bmy_00258T0/1-1109 VRRFEDVSSE VSTLHKRKGR QSNWNPQHLL ILQAQFASSL FQTSEGKYLL BACU011315/1-943 VRRFEDVSSE VSTLHKRKGR QSNWNPQHLL ILQAQFASSL FQTSEGKYLL 951 1000 ENSBTAP00000033821/1-1022 SDLGPQERMQ ISKFTGLSMT TISHWLANVK YQLRKTGGTK FLKNMDKGHP ENSP00000360552/1-1034 SDLGPQERMQ ISKFTGLSMT TISHWLANVK YQLRKTGGTK FLKNMDKGHP ENSTTRP00000005474/1-1022 SDLGPQERMQ ISKFTGLSMT TISHWLANVK YQLRKTGGTK FLKNMDKGQP bmy_00258T0/1-1109 SDLGPQERMQ ISKFTGLSMT TISHWLANVK YQLRKTGGTK FLKNMDKGHP BACU011315/1-943 SDLGPQERMQ ISKFTGLSMT TISHWLANVK YQLRKTGGTK FLKNMDKGHP 1001 1050 ENSBTAP00000033821/1-1022 IFYCSDCASQ FRTPSTYISH LESHLGFQMK DMTRLAVEQQ GKAEQEISRV ENSP00000360552/1-1034 IFYCSDCASQ FRTPSTYISH LESHLGFQMK DMTRLSVDQQ SKVEQEISRV ENSTTRP00000005474/1-1022 IFYCSDCVSQ FRTPSTYISH LESHLGFQMK DMTRVAVEQQ SKVEREISRV bmy_00258T0/1-1109 IFYCSDCASQ FRTPSTYIGH LESHLGFQMK DMTRMAVEQQ SKAEQEISRV BACU011315/1-943 IFYCSDCASQ FRTPSTYIGH LESHLGFQMK DMTRMAVEQQ SKAEQEISRV 1051 1100 ENSBTAP00000033821/1-1022 SSAQRSPEST AGEEDTDSKF KCKLCCRTFV SKHAVKLHLS KTHSKSPEHH ENSP00000360552/1-1034 SSAQRSPETI AAEEDTDSKF KCKLCCRTFV SKHAVKLHLS KTHSKSPEHH ENSTTRP00000005474/1-1022 SSAQRSPETI AGEEDTDSKF KCKLCCRTFV SKHAVKLHLS KTHSKSPEHH bmy_00258T0/1-1109 SSAQRSPETI AGEEDTDSKF KCKLCCRTFV SKHAVKLHLS KTHSKSPEHH BACU011315/1-943 SSAQRSPETI AGEEDTDSKF KCKLCCRTFV SKHAVKLHLS KTHSKSPEHH 1101 1150 ENSBTAP00000033821/1-1022 SQFVTDADEE ENSP00000360552/1-1034 SQFVTDVDEE ENSTTRP00000005474/1-1022 SQFVTDVDEE bmy_00258T0/1-1109 SQFVTDVDEE BACU011315/1-943 SQFVTDVDEE