KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:43:57 2014 Check: 00 .. Name: ENSBTAP00000033867/1-1166 Len: 1260 Check: 8471 Weight: 1.00 Name: ENSP00000425133/1-1178 Len: 1260 Check: 1498 Weight: 1.00 Name: ENSTTRP00000014015/1-1171 Len: 1260 Check: 2946 Weight: 1.00 Name: bmy_10510T0/1-1254 Len: 1260 Check: 2474 Weight: 1.00 Name: BACU005808/1-1027 Len: 1260 Check: 6076 Weight: 1.00 // 1 50 ENSBTAP00000033867/1-1166 MLYPSLKPSI DFLVVKRQNL SSLTCHARPH SLQSAEIL-- ---QQAEVLK ENSP00000425133/1-1178 ---------- ---------- ---------M SLQSAQYL-- ---RQAEVLK ENSTTRP00000014015/1-1171 ---------- ---------- ---------- ---------- ---RQAEVLK bmy_10510T0/1-1254 -----MRNWM FLQIVIVGEN VSFKSQMRTG NLKSEEHLKS SNIRQAEVLK BACU005808/1-1027 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000033867/1-1166 ADMTDSKLGP AEVWTSRQAL QDLYQKMLVT DLEYALDKKV EQDLWNHAFK ENSP00000425133/1-1178 ADMTDSKLGP AEVWTSRQAL QDLYQKMLVT DLEYALDKKV EQDLWNHAFK ENSTTRP00000014015/1-1171 ADMTDSKLGP AEVWTSRQAL QDLYQKMLVT DLEYALDKKV EQDLWNHAFK bmy_10510T0/1-1254 ADMTDSKLGP AEVWTSRQAL QDLYQKMLVT DLEYALDKKV EQDLWNHAFK BACU005808/1-1027 ----DSKLGP AEVWTSRQAL QDLYQKMLVT DLEYALDKKV EQDLWNHAFK 101 150 ENSBTAP00000033867/1-1166 NQITTLQGQA KNRANPNRSE VQANLSLFLE AASGFYTQLL QELCTVFNVD ENSP00000425133/1-1178 NQITTLQGQA KNRANPNRSE VQANLSLFLE AASGFYTQLL QELCTVFNVD ENSTTRP00000014015/1-1171 NQITTLQGQA KNRANPNRSE VQANLSLFLE AASGFYTQLL QELCTVFNVD bmy_10510T0/1-1254 NQITTLQGQA KNRANPNRSE VQANLSLFLE AASGFYTQLL QELCTVFNVD BACU005808/1-1027 NQITTLQGQA KNRANPNRSE VQANLSLFLE AASGFYTQLL QELCTVFNVD 151 200 ENSBTAP00000033867/1-1166 LPCRVKSSQL GIISNKQTHT SAIVKPQSSS CSYICQHCLV HLGDIARYRN ENSP00000425133/1-1178 LPCRVKSSQL GIISNKQTHT SAIVKPQSSS CSYICQHCLV HLGDIARYRN ENSTTRP00000014015/1-1171 LPCRVKSSQL GIISNKQTHT SAIVKPQSSS CSYICQHCLV HLGDIARYRN bmy_10510T0/1-1254 LPCRVKSSQL GIISNKQTHT SAIVKPQSSS CSYICQHCLV HLGDIARYRN BACU005808/1-1027 LPCRVKSSHL GIISNKQTRT SAIVKPQSSS CSYICQHCLV HLGDIARYRN 201 250 ENSBTAP00000033867/1-1166 QTSQAESYYR HAAQLVPSNG QPYNQLAILA SSKGDHLTTI FYYCRSIAVK ENSP00000425133/1-1178 QTSQAESYYR HAAQLVPSNG QPYNQLAILA SSKGDHLTTI FYYCRSIAVK ENSTTRP00000014015/1-1171 QTSQAESYYR HAAQLVPSNG QPYNQLAILA SSKGDHLTTI FYYCRSIAVK bmy_10510T0/1-1254 QTSQAESYYR HAAQLVPSNG QPYNQLAILA SSKGDHLTTI FYYCRSIAVK BACU005808/1-1027 QTSQAESYYR HAAQLVPSNG QPYNQLAILA SSKGDHLTTI FYYCRSIAVK 251 300 ENSBTAP00000033867/1-1166 FPFPAASTNL QKALSKALES RDEVKTKWGV SDFIKAFIKF HGHVYLSKSL ENSP00000425133/1-1178 FPFPAASTNL QKALSKALES RDEVKTKWGV SDFIKAFIKF HGHVYLSKSL ENSTTRP00000014015/1-1171 FPFPAASTNL QKALSKALES RDEVKTKWGV SDFIKAFIKF HGHVYLSKSL bmy_10510T0/1-1254 FPFPAASTNL QKALSKALES RDEVKTKWGV SDFIKAFIKF HGHVYLSKSL BACU005808/1-1027 FPFPAASTNL QKALSKALES RDEVKTKWGV SDFIKAFIKF HGHVYLSKSL 301 350 ENSBTAP00000033867/1-1166 EKLSPLREKL EEQFKRLLFQ KAFNSQQLVH VTVINLFQLH HLRDFSNETE ENSP00000425133/1-1178 EKLSPLREKL EEQFKRLLFQ KAFNSQQLVH VTVINLFQLH HLRDFSNETE ENSTTRP00000014015/1-1171 EKLSPLREKL EEQFKRLLFQ KAFNSQQLVH VTVINLFQLH HLRDFSNETE bmy_10510T0/1-1254 EKLSPLREKL EEQFKRLLFQ KAFNSQQLVH VTVINLFQLH HLRDFSNETE BACU005808/1-1027 EKLSPLREKL EEQFKRLLFQ KAFNSQQLVH VTVINLFQLH HLRDFSNETE 351 400 ENSBTAP00000033867/1-1166 QHSYSQDEQL CWTQLLALFM SFLGILCKCP LQNKSQEESY NAYPLPAVKV ENSP00000425133/1-1178 QHTYSQDEQL CWTQLLALFM SFLGILCKCP LQNESQEESY NAYPLPAVKV ENSTTRP00000014015/1-1171 QHSYSQDEQL CWTQLLALFM SFLGILCKCP LQNKSQEESY NAYPLPAVKV bmy_10510T0/1-1254 QHSYSQDEQL CWTQLLALFM SFLGILCKCP LQNKSQEESY NAYPLPAVKV BACU005808/1-1027 QHSYSQDEQL CWTQLLALF- ---------- ---------- ---------- 401 450 ENSBTAP00000033867/1-1166 SMDWLRLRPR VFQEAVVDER QYIWPWLISL LNSFHPHEED LSSTNATPLP ENSP00000425133/1-1178 SMDWLRLRPR VFQEAVVDER QYIWPWLISL LNSFHPHEED LSSISATPLP ENSTTRP00000014015/1-1171 SMDWLRLRPR VFQEAVVDER QYIWPWLISL LNSFHPHEED LSSTNATPLP bmy_10510T0/1-1254 SMDWLRLRPR VFQEAVVDER HX-WPWLISL LNSFHPHEED LSSTNATPLP BACU005808/1-1027 ---------- ---------- ---------- ---------- ---------- 451 500 ENSBTAP00000033867/1-1166 EEFELQGFLA LRPSFRNLDF SKGHQGITGD KEGQQRQIRQ QRLISIGKWI ENSP00000425133/1-1178 EEFELQGFLA LRPSFRNLDF SKGHQGITGD KEGQQRRIRQ QRLISIGKWI ENSTTRP00000014015/1-1171 EEFELQGFLA LRPSFRNLDF SKGHQGITGD KEGQQRQIRQ QRLISIGKWI bmy_10510T0/1-1254 EEFELQGFLA LRPSFRNLDF SKGHQGITGD KEGQQRQIRQ QRLISIGKWI BACU005808/1-1027 ---------- ---------- ---------- ---------- ---------- 501 550 ENSBTAP00000033867/1-1166 ADNQPRLIQC ENEVGKLLFI TEIPELILED PSEAKENLIL QDTTIIESLA ENSP00000425133/1-1178 ADNQPRLIQC ENEVGKLLFI TEIPELILED PSEAKENLIL QETSVIESLA ENSTTRP00000014015/1-1171 ADNQPRLIQC ENEVGKLLFI TEIPELILEE PSEAKENLIL QETTIIESLA bmy_10510T0/1-1254 ADNQPRLIQC ENEVGKLLFI TEIPELILED PSEAKENLIL QETTIIESLA BACU005808/1-1027 ---------- ---------- -KIPELILED PSEAKENLIL QETTIIESLA 551 600 ENSBTAP00000033867/1-1166 ADGNPGLKSV LSTGRNLSNN CDPGEKPVVT FKENMKPREV SRDQGRSFPP ENSP00000425133/1-1178 ADGSPGLKSV LSTSRNLSNN CDTGEKPVVT FKENIKTREV NRDQGRSFPP ENSTTRP00000014015/1-1171 VDGNPGLKSV LSTGRNLSNN CDTGEKPVVT FKENIKPREV NRDQGRSFPP bmy_10510T0/1-1254 VDGNPGLKSV LSTGRNLSNN CDTGEKPVVT FKENIKPREV NRDQGRSFPP BACU005808/1-1027 VDGNPGLKSV LSTGRNLSNN CDTGEKPVVT FKENIKPREV NRDQGRSFPP 601 650 ENSBTAP00000033867/1-1166 KEVRRDYSKG VAVTENDGKK DNNKRKTETK KCTLEKLQET GKQSVAVQVK ENSP00000425133/1-1178 KE-------- ---------- ---------- ---------- --------VK ENSTTRP00000014015/1-1171 KE-------- ---------- ---------- ---------- --------VK bmy_10510T0/1-1254 KEVRRDYSKG ITVTKNDGKK DNNKRKTETK KCTLEKLQET GKQNVAVQVK BACU005808/1-1027 KEVRRDYSKG ITVTKNDGKK DNNKRKTETK KCTLEKLQET GKQNVAVQVK 651 700 ENSBTAP00000033867/1-1166 SQTELRKTPV SEARKTPVTQ TPSQASNSQF IPIHHPGAFP PLPSRPGFPP ENSP00000425133/1-1178 SQTELRKTPV SEARKTPVTQ TPTQASNSQF IPIHHPGAFP PLPSRPGFPP ENSTTRP00000014015/1-1171 SQTELRRTPV SEARKTPVTQ APSQASNSQF IPIHHPGAFP PLPSRPGFPP bmy_10510T0/1-1254 SQTELRKTPV SEARKTPVTQ APSQASNSQF IPIHHPGAFP PLPSRPGFPP BACU005808/1-1027 SQTELRKTPV SEARKTPVTQ APSQASNSQF IPIHHPGAFP PLPSRPGFPP 701 750 ENSBTAP00000033867/1-1166 PTYVIPPPVA FSMGSGYTFP AGVSVPGTFL QPTAHSPPGN QVQAGKQSHI ENSP00000425133/1-1178 PTYVIPPPVA FSMGSGYTFP AGVSVPGTFL QPTAHSPAGN QVQAGKQSHI ENSTTRP00000014015/1-1171 PTYVIPPPVA FSMGSGYTFP AGVSVPGTFL QPTAHSPAGN QVQAGKQSHI bmy_10510T0/1-1254 PTYVIPPPVA FSMGSGYTFP AGVSVPGTFL QPTAHSPAGN QVQAGKQSHI BACU005808/1-1027 PTYVIPPPVA FSMGSGYTFP AGVSVPGTFL QPTAHSPAGN QVQAGKQSHI 751 800 ENSBTAP00000033867/1-1166 PYSQQRPSGP GPVTQGPQQP QPPSQQPLPP LPAPPAAQTA GQLQVQALAQ ENSP00000425133/1-1178 PYSQQRPSGP GPMNQGPQQS QPPSQQPLTS LPAQPTAQST SQLQVQALTQ ENSTTRP00000014015/1-1171 PYSQQRPSGP GPMNQGPQQP QPPSQQPLTS LPAQPTAQST SQLQVQALAQ bmy_10510T0/1-1254 PYSQQRPSGP GPMNQGPQQP QPPSQQPLTS LPAQPTAQST SQLQVQALAQ BACU005808/1-1027 PYSQQRPSGP GPMNQGPQQP QPPSQQPLTS LPAQPTAQST SQLQVQALAQ 801 850 ENSBTAP00000033867/1-1166 QQQSPTKAVP ALGKSPPHHS GFQQYQQADA SKQLWNPPQV QGPLGKIMPV ENSP00000425133/1-1178 QQQSPTKAVP ALGKSPPHHS GFQQYQQADA SKQLWNPPQV QGPLGKIMPV ENSTTRP00000014015/1-1171 QQQSPTKAVP ALGKSPPHHS GFQQYQQADA SKQLWNPPQV QGPLGKIMPV bmy_10510T0/1-1254 QQQSPTKAVP ALGKSPPHHS GFQQYQQADA SKQLWNPPQV QGPLGKIMPV BACU005808/1-1027 QQQSPTKAVP ALGKSPPHHS GFQQYQQADA SKQLWNPPQV QGPLGKIMPV 851 900 ENSBTAP00000033867/1-1166 KQPYYLQTQD PIKLFEPSLQ PPVRQQQPLE KTMKPFPMEP YNHNPSEVKI ENSP00000425133/1-1178 KQPYYLQTQD PIKLFEPSLQ PPVMQQQPLE KKMKPFPMEP YNHNPSEVKV ENSTTRP00000014015/1-1171 KQPYYLQTQD PIKLFEPSLQ PPVMQQQPLE KKMKPFPMEP YNHNSSEVKI bmy_10510T0/1-1254 KQPYYLQTQD PIKLFEPSLQ PPVMQQQPLE KKMKPFPMEP YNHNPSEVKI BACU005808/1-1027 KQPYYLQTQD PIKLFEPSLQ PPVMQQQPLE KKMKPFPMEP YNHNPSEVKI 901 950 ENSBTAP00000033867/1-1166 PEFYWDSSYS AADNRAVMAQ QASVDRRGKR SPGVFRPEQD PVPRMPFE-- ENSP00000425133/1-1178 PEFYWDSSYS MADNRSVMAQ QANIDRRGKR SPGVFRPEQD PVPRMPFEDP ENSTTRP00000014015/1-1171 PEFYWDSSYS MADSRAVMAQ QANMDRRGKR SPGVFRPEQD PVPRMPFEDP bmy_10510T0/1-1254 PEFYWDSSYS MADNRAVMAQ QANMDRRGKR SPGVFRPEQD PVPRMPFEDP BACU005808/1-1027 PEFYWDSSYS LADNRAVTAQ QANMDRRGKR PPGVFRPEQD PVPRMPFEDP 951 1000 ENSBTAP00000033867/1-1166 ---------- ---------- ---------- ---------- --------KS ENSP00000425133/1-1178 KSSPLLPPDL LKSLAALEEE EELIFSNPPD LYPALLGPLA SLPGRSLFKS ENSTTRP00000014015/1-1171 KGSPLLPPDL LKSLAALEEE EELIFSNPPD LYPALLGPLA SLPGRSLFKS bmy_10510T0/1-1254 KGSPLLPPDL LKSLAALEEE EELIFSNPPD LYPALLGPLA SLPGRSLFKS BACU005808/1-1027 KGSPLLPPDL LKSLAALEEE EELIFSNPPD LYPALLGPLA SLPGRSLF-- 1001 1050 ENSBTAP00000033867/1-1166 LLEKPSELMS HSSSFLSLTG FSLNQERYPN NSVFNEVYGK NLTTSSKAEL ENSP00000425133/1-1178 LLEKPSELMS HSSSFLSLTG FSLNQERYPN NSMFNEVYGK NLTSSSKAEL ENSTTRP00000014015/1-1171 LLEKPSELMS HSSSFLSLTG FSLNQERYPN NSVFNEVYGK NLTTSSKAEL bmy_10510T0/1-1254 LLEKPSELMS HSSSFLSLTG FSLNQERYPN NSVFNEVYGK NLTSSSKAEL BACU005808/1-1027 ---------- ---------- -----ERYPN NSVFNEVYGK NLTSSSKAEL 1051 1100 ENSBTAP00000033867/1-1166 NPSVAPQETS LYSLFEGTPW SPSLPASSDH STPASQSPHS SNPSSLPSSP ENSP00000425133/1-1178 SPSMAPQETS LYSLFEGTPW SPSLPASSDH STPASQSPHS SNPSSLPSSP ENSTTRP00000014015/1-1171 NPSMAPQETS LYSLFEGTPW SPSLPASSDH STPASQSPHS SNPSSLPSSP bmy_10510T0/1-1254 NPSLAPQETS LYSLFEGTPW SPSLPASSDH STPASQSPHS SNPSSLPSSP BACU005808/1-1027 NPSLAPQETS LYSLFEGTPW SPSLPASSDH STPASQSPHS SNPSSLPSSP 1101 1150 ENSBTAP00000033867/1-1166 PTHNHNSVPF SNFGPIGTPD NRDRRTADRW KTDKPAMGGF GIDYLSATSS ENSP00000425133/1-1178 PTHNHNSVPF SNFGPIGTPD NRDRRTADRW KTDKPAMGGF GIDYLSATSS ENSTTRP00000014015/1-1171 PTHNHNSVPF SNFGPIGTPD NTHRRTADRW KTDKPAMGGF GIDYLSATSS bmy_10510T0/1-1254 PTHNHNSVPF SNFGPIGTPD NRDRRTADRW KTDKPAMGGF GIDYLSATSS BACU005808/1-1027 PTHNHNSVPF SNFGPIGTPD NRDRRTADRW KTDKPAMGGF GIDYLSATSS 1151 1200 ENSBTAP00000033867/1-1166 SESSWHQAST PSGSWTGHGP SMEDSSAVLM ESLK------ ---------- ENSP00000425133/1-1178 SESSWHQAST PSGTWTGHGP SMEDSSAVLM ESLKKQQHGV QQLGPKRQSE ENSTTRP00000014015/1-1171 SESSWHQAST SSGSWTGHGP SMEDSSAVLM ESLKKQQHGV QQLGPERQSE bmy_10510T0/1-1254 SESSWHQAST SSGSWTGHGP SMEDSSAVLM ESLKKQQRGV QQLGPKRQSE BACU005808/1-1027 SESSWHQAST SSGSWTGHGP SMEDSSAVLM ESLKKQQHGV QQLGPKRQSE 1201 1250 ENSBTAP00000033867/1-1166 ----SIWSSS MMHPGPSAL- ---------- -----EQLLM QQKQKQQRGQ ENSP00000425133/1-1178 EEGSS--SIC VAHRGPRPLP SCSLPASTFR VKFKAARTCA HQAQKKTRRR ENSTTRP00000014015/1-1171 EEGSSSSGVC TAHRGARPLP GCSLPASTFR VKFKATRTRV RHAEKKTQGS bmy_10510T0/1-1254 EEGSSSSGVC IAHRGARPLP GCSLPASTFR VKFKATQTRV HHAEKKTQGS BACU005808/1-1027 EEGSSSSGVC TAHRGARPLP GCSLPASTFR VKFKATQTRV HHAEKKTQGS 1251 1300 ENSBTAP00000033867/1-1166 GAMNPPH--- ENSP00000425133/1-1178 PFWKRRKKGK ENSTTRP00000014015/1-1171 PFWKRRKEGK bmy_10510T0/1-1254 PFWKRRKKGK BACU005808/1-1027 PFWKRRKKGK