KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:43:59 2014 Check: 00 .. Name: ENSTTRP00000015039/1-1225 Len: 1728 Check: 7263 Weight: 1.00 Name: BACU007478/1-1676 Len: 1728 Check: 6502 Weight: 1.00 Name: bmy_09703T0/1-959 Len: 1728 Check: 3944 Weight: 1.00 Name: ENSBTAP00000033893/1-1219 Len: 1728 Check: 2165 Weight: 1.00 Name: ENSP00000357475/1-1223 Len: 1728 Check: 1810 Weight: 1.00 // 1 50 ENSTTRP00000015039/1-1225 --------MG T-------LR AVPL-LSISG LFSLPPSFPS RVSHGIAG-- BACU007478/1-1676 -MTRDEDEDD EEEEGATWGR GSSRFEGPQP PE----EFGF GFSFSPGGGM bmy_09703T0/1-959 MLLRTRTRDW R-------GR GGGCGQGRTG DR----ESEL RVSHGIAG-- ENSBTAP00000033893/1-1219 ---------- --------MR LCDC-VLQAR PF----TF-F RVSHGIAG-- ENSP00000357475/1-1223 --------MD T-------LR AVPL-FSISG LF----SFPY RVSHGIAG-- 51 100 ENSTTRP00000015039/1-1225 ---------- ------TLLG EM-ALCAKKR PP-------- ---------- BACU007478/1-1676 RFHDNFGFDD LVRDFNNIFS EMGAWTLPSR PPELPGPESE TPGERRQEGQ bmy_09703T0/1-959 ---------- ------TLLG EM-ALCAKKR PPGKTG---- ---------- ENSBTAP00000033893/1-1219 ---------- ------TLLG EM-ALCAKKR PP-------- ---------- ENSP00000357475/1-1223 ---------- ------ILLG EM-AVCAKKR PP-------- ---------- 101 150 ENSTTRP00000015039/1-1225 ---------- ---------- ---------- ---------- ---------- BACU007478/1-1676 TLRDSMLKYP DSHQPRIFRG ALESDARTES SKPAPGWGSQ RPFHRFDDTW bmy_09703T0/1-959 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000033893/1-1219 ---------- ---------- ---------- ---------- ---------- ENSP00000357475/1-1223 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000015039/1-1225 ---------- ---------- ---------- ---------- ---------- BACU007478/1-1676 PVTPHARARE DNDLDTQVSE EGLGPVLQPQ PKSYFKSVSV TKITKPDGTV bmy_09703T0/1-959 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000033893/1-1219 ---------- ---------- ---------- ---------- ---------- ENSP00000357475/1-1223 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000015039/1-1225 ---------- ---------- ---------- ---------- ---------- BACU007478/1-1676 EERRTVVDSE GRKETTVTHQ EAGGSPRDGP ESPTPPSLDD AFSILDLFLG bmy_09703T0/1-959 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000033893/1-1219 ---------- ---------- ---------- ---------- ---------- ENSP00000357475/1-1223 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000015039/1-1225 ---------- ---------- ---------- ---------- ---------- BACU007478/1-1676 RWFRSRASQI NLAHKKLFLN FLLYFQNLIL LLIQGTLAQA VTSGGTKGNF bmy_09703T0/1-959 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000033893/1-1219 ---------- ---------- ---------- ---------- ---------- ENSP00000357475/1-1223 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000015039/1-1225 ---------- ---------- ---------- ---------- ---------- BACU007478/1-1676 FTMFLAGSLG VRLAIYVSGN VSDALQNYTG GNLTVTGPKE TASIFVTYPV bmy_09703T0/1-959 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000033893/1-1219 ---------- ---------- ---------- ---------- ---------- ENSP00000357475/1-1223 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000015039/1-1225 ---------- ---------- ---------- ---------- ---------- BACU007478/1-1676 PYLTLSNGFL DQVLGTWMLI VGILAILDTR NKGVPAGVEP VVVGLLILAI bmy_09703T0/1-959 ---------- ---------- ---------R RRGRGESLGP SRVGVVMAQG ENSBTAP00000033893/1-1219 ---------- ---------- ---------- ---------- ---------- ENSP00000357475/1-1223 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000015039/1-1225 ---------- ---------- ---------- ---------- ---------- BACU007478/1-1676 RLSMGASCGF PINPAWDLDP RLFTYVAGWG PEVFRGETAS PGARWQWLVV bmy_09703T0/1-959 AKGRGTT--- ---------- ---------- ---------- ---------- ENSBTAP00000033893/1-1219 ---------- ---------- ---------- ---------- ---------- ENSP00000357475/1-1223 ---------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000015039/1-1225 ---------- ---------- ---------- ---------- ---------- BACU007478/1-1676 GPLVRATLST ATHQRLVPLH HPEHSEPAQD LECAQPEASD LESPAATQVQ bmy_09703T0/1-959 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000033893/1-1219 ---------- ---------- ---------- ---------- ---------- ENSP00000357475/1-1223 ---------- ---------- ---------- ---------- ---------- 501 550 ENSTTRP00000015039/1-1225 -EEERRARAN DREYNERFQY ASNCIKTSKY NILTFLPVNL FEQFQEVANT BACU007478/1-1676 EKEERRARAN DREYNERFQY ASNCIKTSKY NILTFLPVNL FEQFQEVANT bmy_09703T0/1-959 -EEERRARAN DREYNERFQY ASNCIKTSKY NILTFLPVNL FEQFQEVANT ENSBTAP00000033893/1-1219 -EEERRARAN DREYNEKFQY ASNCIKTSKY NILTFLPVNL FEQFQEVANT ENSP00000357475/1-1223 -EEERRARAN DREYNEKFQY ASNCIKTSKY NILTFLPVNL FEQFQEVANT 551 600 ENSTTRP00000015039/1-1225 YFLFLLILQL IPQISSLSWF TTIVPLVLVL TITAVKDATD DYFRHKSDNQ BACU007478/1-1676 YFLFLLILQL IPQISSLSWF TTIVPLVLVL TITAVKDATD DYFRHKSDNQ bmy_09703T0/1-959 YFLFLLILQL IPQISSLSWF TTIVPLVLVL TITAVKDATD DYFRHKSDNQ ENSBTAP00000033893/1-1219 YFLFLLILQL IPQISSLSWF TTIVPLVLVL TITAVKDATD DYFRHKSDNQ ENSP00000357475/1-1223 YFLFLLILQL IPQISSLSWF TTIVPLVLVL TITAVKDATD DYFRHKSDNQ 601 650 ENSTTRP00000015039/1-1225 VNNRQSQVLI NGILQQEQWM NVCVGDIIKL ENNQFVAADL LLLSSSEPHG BACU007478/1-1676 VNNRQSQVLI NGILQQEQWM NVCVGDIIKL ENNQFVAADL LLLSSSEPHG bmy_09703T0/1-959 VNNRQSQVLI NGILQQEQWM NVCVGDIIKL ENNQFVAADL LLLSSSEPHG ENSBTAP00000033893/1-1219 VNNRQSQVLI NGILQQEQWM NVCVGDIIKL ENNQFVAADL LLLSSSEPHG ENSP00000357475/1-1223 VNNRQSQVLI NGILQQEQWM NVCVGDIIKL ENNQFVAADL LLLSSSEPHG 651 700 ENSTTRP00000015039/1-1225 LCYIETAELD GETNMKVRQA IPVTSELGDI SKLAKFDGEV ICEPPNNKLD BACU007478/1-1676 LCYIETAELD GETNMKVRQA IPVTSELGDI SKLAKFDGEV ICEPPNNKLD bmy_09703T0/1-959 LCYIETAELD GETNMKVRQA IPVTSELGDI SKLAKFDGEV ICEPPNNKLD ENSBTAP00000033893/1-1219 LCYIETAELD GETNMKVRQA IPVTSELGDI SKLAKFDGEV ICEPPNNKLD ENSP00000357475/1-1223 LCYIETAELD GETNMKVRQA IPVTSELGDI SKLAKFDGEV ICEPPNNKLD 701 750 ENSTTRP00000015039/1-1225 KFSGTLYWKE NKFPLSNQNM LLRGCVLRNT EWCFGLVIFA GPDTKLMQNS BACU007478/1-1676 KFSGTLYWKE NKFPLSNQNM LLRGCVLRNT EWCFGLVIFA GPDTKLMQNS bmy_09703T0/1-959 KFSGTLYWKE NKFPLSNQNM LLRGCVLRNT EWCFGLVIFA GPDTKLMQNS ENSBTAP00000033893/1-1219 KFSGTLYWKE SKFPLSNQNM LLRGCVLRNT EWCFGLVIFA GPDTKLMQNS ENSP00000357475/1-1223 KFSGTLYWKE NKFPLSNQNM LLRGCVLRNT EWCFGLVIFA GPDTKLMQNS 751 800 ENSTTRP00000015039/1-1225 GRTKFKRTSI DRLMNTLVLW XXXXXXCMGV ILAIGNAIWE HEV-TRFQVY BACU007478/1-1676 GRTKFKRTSI DRLMNTLVLW IFGFLVCMGV ILAIGNAIWE HEVGTRFQVY bmy_09703T0/1-959 GRTKFKRTSI DRLMNTLVLW IFGFLVCMGV ILAIGNAIWE HEVGTRFQVY ENSBTAP00000033893/1-1219 GRTKFKRTSI DRLMNTLVLW IFGFLVCMGV ILAIGNAIWE HEVGTRFQVY ENSP00000357475/1-1223 GRTKFKRTSI DRLMNTLVLW IFGFLVCMGV ILAIGNAIWE HEVGMRFQVY 801 850 ENSTTRP00000015039/1-1225 LPWDEAVDS- FFSGFLSFWS YIIILNTVVP ISLYVXXXXX XXXXXXXXXX BACU007478/1-1676 LPWDEAVDSA FFSGFLSFWS YIIILNTVVP ISLYVSVEVI RLGHSYFINW bmy_09703T0/1-959 LPWDEAVDSA FFSGFLSFWS YIIILNTVVP ISLYVSVEVI RLGHSYFINW ENSBTAP00000033893/1-1219 LPWDEAVDSA FFSGFLSFWS YIIILNTVVP ISLYVSVEVI RLGHSYFINW ENSP00000357475/1-1223 LPWDEAVDSA FFSGFLSFWS YIIILNTVVP ISLYVSVEVI RLGHSYFINW 851 900 ENSTTRP00000015039/1-1225 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU007478/1-1676 DKKMFCMKKR TPAEARTTTL NEELGQVEYI FSDKTGTLTQ NIMVFNKCSI bmy_09703T0/1-959 DKKMFCMKKR TPAEARTTTL NEELGQVEYI FSDKTGTLTQ NIMVFNKCSI ENSBTAP00000033893/1-1219 DKKMFCTKKR TPAEARTTTL NEELGQVEYI FSDKTGTLTQ NIMVFNKCSI ENSP00000357475/1-1223 DKKMFCMKKR TPAEARTTTL NEELGQVEYI FSDKTGTLTQ NIMVFNKCSI 901 950 ENSTTRP00000015039/1-1225 XXXXXX---- -------XXX XXXXXXXXXX XKTEKVDFSY NRLADPKFSF BACU007478/1-1676 NGRSYG---- -------DVF DVLGHKAELG ERPEPVNFSF NPLADKKFLF bmy_09703T0/1-959 NGRSYGRAAP PGTEGLRDVF DVLGHKAELG E--------- ---------- ENSBTAP00000033893/1-1219 NGRSYG---- -------DVF DVLGHKAELG ERPEPVDFSF NPLADKKFLF ENSP00000357475/1-1223 NGHSYG---- -------DVF DVLGHKAELG ERPEPVDFSF NPLADKKFLF 951 1000 ENSTTRP00000015039/1-1225 YDKTLVEAVK RGDRWVHLFF LSLSLCHTVI PEEKVEXXXX XXXXXXXXXX BACU007478/1-1676 WDPTLLEAVK MGDPHTHEFF RLLSLCHTVM SEEKNEGELY YKAQSPDEGA bmy_09703T0/1-959 ---------- ---------- ---------- VRSRPHGELY YKAQSPDEGA ENSBTAP00000033893/1-1219 WDPTLLEAVK MGDPHTHEFF RLLSLCHTVM SEEKSEGELY YKAQSPDEGA ENSP00000357475/1-1223 WDPSLLEAVK IGDPHTHEFF RLLSLCHTVM SEEKNEGELY YKAQSPDEGA 1001 1050 ENSTTRP00000015039/1-1225 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXILDFN NIRKRMSVIV BACU007478/1-1676 LVTAARNFGF VFRSRTPKTI TVHEMGTAIT YQLLAILDFN NIRKRMSVIV bmy_09703T0/1-959 LVTAARNFGF VFRSRTPKTI TVHEMGTAIT YQLLAILDFN NIRKRMSVIV ENSBTAP00000033893/1-1219 LVTAARNFGF VFRSRTPKTI TVHEMGTAIT YQLLAILDFN NIRKRMSVIV ENSP00000357475/1-1223 LVTAARNFGF VFRSRTPKTI TVHEMGTAIT YQLLAILDFN NIRKRMSVIV 1051 1100 ENSTTRP00000015039/1-1225 RNPEGKIRLY CKGADTILLD RLHHSTQELL NTTTDHLNEY AGEGLRTLVL BACU007478/1-1676 RNPEGKIRLY CKGADTILLD RLHHSTQELL NTTADHLNEY AGEGLRTLVL bmy_09703T0/1-959 RNPEGKIRLY CKGADTILLD RLHHSTQELL NTTTDHLNEY AGEGLRTLVL ENSBTAP00000033893/1-1219 RNPEGKIRLY CKGADTILLD RLHHSTQELL NTTTDHLNEY AGEGLRTLVL ENSP00000357475/1-1223 RNPEGKIRLY CKGADTILLD RLHHSTQELL NTTMDHLNEY AGEGLRTLVL 1101 1150 ENSTTRP00000015039/1-1225 AYKDLDEEYY EEWAERRLQA SLAQDSREDR LASVYEEVES DML------- BACU007478/1-1676 AYKDLDEEYY EEWAERRLQA SLAQDSREDR LASVYEEVES DMM------- bmy_09703T0/1-959 AYKDLDEEYY EEWAERRLQA SLAQDSREDR LASVYEEVES DMMVWAAEWA ENSBTAP00000033893/1-1219 AYKDLDEEYY EEWAGRRLQA SLAQDSRDDR LASVYEEVES DMM------- ENSP00000357475/1-1223 AYKDLDEEYY EEWAERRLQA SLAQDSREDR LASIYEEVEN NMM------- 1151 1200 ENSTTRP00000015039/1-1225 ---------- ---------- -LLGATAIED KLQQGVPETI ALLTLANIKI BACU007478/1-1676 ---------- ---------- -LLGATAIED KLQQGVPETI ALLTLANIKI bmy_09703T0/1-959 KGGQGGVVPG LSSQGPLWYF QLLGATAIED KLQQGVPETI ALLTLANIKI ENSBTAP00000033893/1-1219 ---------- ---------- -LLGATAIED KLQQGVPETI ALLTLANIKI ENSP00000357475/1-1223 ---------- ---------- -LLGATAIED KLQQGVPETI ALLTLANIKI 1201 1250 ENSTTRP00000015039/1-1225 WVLTGDKQ-- ------ETAV NIGYSCKMLT DDMTEVFIVT GHTVLEVRAE BACU007478/1-1676 WVLTGDKQ-- ------ETAV NIGYSCKMLT DDMTEVFIVT GHTVLEVREE bmy_09703T0/1-959 WVLTGDKQEL LQSLLVETAV NIGYSCKMLT DDMTEVFIVT GHTVLEVREE ENSBTAP00000033893/1-1219 WVLTGDKQ-- ------ETAV NIGYSCKMLT DDMTEVFIVT GHTVLEVREE ENSP00000357475/1-1223 WVLTGDKQ-- ------ETAV NIGYSCKMLT DDMTEVFIVT GHTVLEVREE 1251 1300 ENSTTRP00000015039/1-1225 LRKAREKMMD SSRTVGNGFT YQEKLSSSKL TSVLEAVAGE YALVINGHSL BACU007478/1-1676 LRKAREKMMD SSRTVGNGFT YQEKLSSSKL TSVLEAVSGE YALVINGHSL bmy_09703T0/1-959 LRKAREKMMD SSRTVGNGFT YQEKLSSSKL TSVLEAVAGE YALVINGHSL ENSBTAP00000033893/1-1219 LRKAREKMMD SSRAVGNGFT YQEKLSSSRL TSVLEAVAGE YALVINGHSL ENSP00000357475/1-1223 LRKAREKMMD SSRSVGNGFT YQDKLSSSKL TSVLEAVAGE YALVINGHSL 1301 1350 ENSTTRP00000015039/1-1225 AHALEADMEL EFLETACACK AVICCRVTPL QKAQVVELVK KYKKAVTLAI BACU007478/1-1676 AHALEADMEL EFLETACACK AVICCRVTPL QKAQVVELVK KYKKAVTLAI bmy_09703T0/1-959 AHALEADMEL EFLETACACK AVICCRVTPL QKAQVVELVK KYKKAVTLAI ENSBTAP00000033893/1-1219 AHALEADMEL EFLETACACK AVICCRVTPL QKAQVVELVK KYKKAVTLAI ENSP00000357475/1-1223 AHALEADMEL EFLETACACK AVICCRVTPL QKAQVVELVK KYKKAVTLAI 1351 1400 ENSTTRP00000015039/1-1225 GDGANDVSMI KTAHIGVGIS GQEGIQAVLA SDYSFSQFKF LQRLLLVHGR BACU007478/1-1676 GDGANDVSMI KTAHIGVGIS GQEGIQAVLA SDYSFSQFKF LQRLLLVHGR bmy_09703T0/1-959 GDGANDVSMI KTAHIGVGIS GQEGIQAVLA SDYSFSQFKF LQRLLLVHGR ENSBTAP00000033893/1-1219 GDGANDVSMI KTAHIGVGIS GQEGIQAVLA SDYSFSQFKF LQRLLLVHGR ENSP00000357475/1-1223 GDGANDVSMI KTAHIGVGIS GQEGIQAVLA SDYSFSQFKF LQRLLLVHGR 1401 1450 ENSTTRP00000015039/1-1225 WSYLRMCKFL CYFFYKNFAF TMVHFWFGFF CGFSAQTVYD QYFITLYNIV BACU007478/1-1676 WSYLRMCKFL CYFFYKNFAF TMVHFWFGFF CGFSAQTVYD QYFITLYNIV bmy_09703T0/1-959 WSYLRMCKFL CYFFYKNFAF TMVHF----- ---------- ---------- ENSBTAP00000033893/1-1219 WSYLRMCKFL CYFFYKNFAF TMVHFWFGFF CGFSAQTVYD QYFITLYNIV ENSP00000357475/1-1223 WSYLRMCKFL CYFFYKNFAF TMVHFWFGFF CGFSAQTVYD QYFITLYNIV 1451 1500 ENSTTRP00000015039/1-1225 YTSLPVLAMG VFDQDVPEQR SMEYPKLYEP GQLNLLFNKR EFFICIAQGI BACU007478/1-1676 YTSLPVLAMG VFDQDVPEQR SMEYPKLYEP GQLNLLFNKR EFFICIAQGI bmy_09703T0/1-959 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000033893/1-1219 YTSLPVLAMG VFDQDVPEQR SMEYPKLYEP GQLNLLFNKR EFFICIAQGI ENSP00000357475/1-1223 YTSLPVLAMG VFDQDVPEQR SMEYPKLYEP GQLNLLFNKR EFFICIAQGI 1501 1550 ENSTTRP00000015039/1-1225 YTSVLMFFIP YGAFAEATRD DGTQLADYQS FAVTVTTSLV IVISVQXXXX BACU007478/1-1676 YTSVLMFFIP YGVFAEATRD DGTQLADYQS FAVTVATSLV IVVSVQIGLD bmy_09703T0/1-959 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000033893/1-1219 YTSVLMFFIP YGVFAEATRD DGTQLADYQS FAVTVATSLV IVVSVQIGLD ENSP00000357475/1-1223 YTSVLMFFIP YGVFADATRD DGTQLADYQS FAVTVATSLV IVVSVQIGLD 1551 1600 ENSTTRP00000015039/1-1225 XXXXXXXXXX XXXXXXXVYF AILFAMHSNG LFDMFPNQFR FVGNAQNTLA BACU007478/1-1676 TGYWTAINHF FIWGSLAVYF AILFAMHSNG LFDMFPNQFR FVGNAQNTLA bmy_09703T0/1-959 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000033893/1-1219 TGYWTAINHF FIWGSLAVYF AILFAMHSNG LFDMFPNQFR FVGNAQNTLA ENSP00000357475/1-1223 TGYWTAINHF FIWGSLAVYF AILFAMHSNG LFDMFPNQFR FVGNAQNTLA 1601 1650 ENSTTRP00000015039/1-1225 QPTVWLTIVL TTVVCIMPVV AFRFLRLNLK PDLSDTVRYT QLVRKKQKAQ BACU007478/1-1676 QPTVWLTIVL TTVVCIMPVV AFRFLKLNLK PDLSDTVRYT QLVRKKQKAQ bmy_09703T0/1-959 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000033893/1-1219 QPTVWLTIVL TTVVCIMPVV AFRFLRLNLK PDLSDTVRYT QLVRKKQKAQ ENSP00000357475/1-1223 QPTVWLTIVL TTVVCIMPVV AFRFLRLNLK PDLSDTVRYT QLVRKKQKAQ 1651 1700 ENSTTRP00000015039/1-1225 HRCMRRVGRT GSRRSGYAFS HQEGFGELIM SGKNMRLSSL ALSGFTTRSS BACU007478/1-1676 HRCMRRVGRT GSRRSGYAFS HQEGFGELIM SGKNMRLSSL ALSGFTTRSS bmy_09703T0/1-959 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000033893/1-1219 HRCMRRVGRT GSRRSGYAFS HQEGFGELIM SGKNMRLSSL ALSSFTTRSS ENSP00000357475/1-1223 HRCMRRVGRT GSRRSGYAFS HQEGFGELIM SGKNMRLSSL ALSSFTTRSS 1701 1750 ENSTTRP00000015039/1-1225 SSWIESLRRK KSDSASSPSG GADKPLKG BACU007478/1-1676 SSWIESLRRK KSDSASSPSG GADKPLKG bmy_09703T0/1-959 ---------- ---------- -------- ENSBTAP00000033893/1-1219 SSWIESLRRK KSDSASSPSG GADKPLKG ENSP00000357475/1-1223 SSWIESLRRK KSDSASSPSG GADKPLKG