KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:44:04 2014 Check: 00 .. Name: bmy_10015T0/1-405 Len: 764 Check: 8125 Weight: 1.00 Name: ENSTTRP00000016126/1-654 Len: 764 Check: 2466 Weight: 1.00 Name: ENSP00000368592/1-673 Len: 764 Check: 7421 Weight: 1.00 Name: BACU001186/1-531 Len: 764 Check: 9403 Weight: 1.00 Name: ENSBTAP00000033949/1-677 Len: 764 Check: 7942 Weight: 1.00 // 1 50 bmy_10015T0/1-405 MRQVAGVLRN WQAQVG---- ARARLTTPTQ VHPEPAAAGR KEVRRALLPA ENSTTRP00000016126/1-654 AARS---RTH FLHCQG---- ---------- -PPPRTQVGT KRGKRSRQG- ENSP00000368592/1-673 MDHS---CTR FIHRRG---- ---------- -PPTRTRAGF KRGKRPRIQQ BACU001186/1-531 MDSP---CRP DSHHRDGSHP QEEAQIQDAG RHPSPGRAGL TVCPVQALGP ENSBTAP00000033949/1-677 MALPPRGTRP HSHHRD---- RNQTGVQHSR QHPSPHRVGP TRCPVPRLGQ 51 100 bmy_10015T0/1-405 HRLRHALHGL LWP-RLRSPH PR------PL RSPFQRPR-W PFNQPEWEKN ENSTTRP00000016126/1-654 --------SG GVPASHLPLA PASHLSLCPT QSP--C-VGW AHERSMGSHR ENSP00000368592/1-673 RP--RARVSG TIPASRLHPA PASQPGPCPA PGH--CPVGP AHERPMGSSQ BACU001186/1-531 WAARRARRGV GAASSQRCPH PSAPASAARS RTHFLHRRGP PPRTQVGTKR ENSBTAP00000033949/1-677 QVARRARRGV GAISSQRYPC PGTPASVARS STHFLHRRGP PPRTQVSTKR 101 150 bmy_10015T0/1-405 --------PA VDMAQTPRW- ---------- --------PG L-------PL ENSTTRP00000016126/1-654 EEGLL---RQ LSQLDQDADG LR----QGPG RGRKAAGPEP LTT-----HL ENSP00000368592/1-673 EEGLR---CQ PSQPDHDADG HCGPDLEGAE RASATPGPPG LLNS----HR BACU001186/1-531 GKRSRMAGVR RSRPRAAGWA H--------E RSMGSHREEG LLQELSQLDQ ENSBTAP00000033949/1-677 GKRSRMAGIR RGRARAPGWA H--------E RPMGSHGEEG LLHQLSQLDQ 151 200 bmy_10015T0/1-405 PAA-STASHL QPQLGILVKR LRAVAPTPSS VPSGCGSGP- ---AGVG--- ENSTTRP00000016126/1-654 PAELDDADTA RPRAALLEKH PLEGEKQR-- -P-GTGQGPF FYIGGTNGAA ENSP00000368592/1-673 PADSDDTNAA GPSAALLEGL LLGGGKPS-- -PHSTRPGPF FYIGGSNGAT BACU001186/1-531 DAELDDADTA RPRAALLEKR PLEGEKQP-- -P-GTGQGPF FYIGGTNGAS ENSBTAP00000033949/1-677 DAELDDSEAI RPQAALLEKH FLEREKQP-- -P-STGQGPF FYIGGTNGAS 201 250 bmy_10015T0/1-405 -----AKGKG L-------RE DLSAGMLWAE VSM------- -EGSQW---- ENSTTRP00000016126/1-654 IISSYCKSKG WQRIQDSRRE DYK--LKWCE VKCRDTYCSF REGEQLLYQL ENSP00000368592/1-673 IISSYCKSKG WQRIHDSRRD DYT--LKWCE VKSRDSYGSF REGEQLLYQL BACU001186/1-531 IISSYCKSKG WQRIQDSGRE DYK--LRWCE VKCRDTYRSF REGEQLLYLL ENSBTAP00000033949/1-677 IISSYCKSKG WRRIQDSRRE DYK--LKWCE VKCRDTYCNF REGKQLLYQL 251 300 bmy_10015T0/1-405 ---------- -EVSGRRPSG RIWGYFSGAG GAGGGA---- ---------- ENSTTRP00000016126/1-654 PNSQLLTTKI GLLSALREHA RVLSKTSKLA PCAQAXXXXX XXXXXXXXXX ENSP00000368592/1-673 PNNKLLTTKI GLLSTLRGRA RAMSKASKVP GGVQARLEKD AAAPALEDLP BACU001186/1-531 PNNQLLTTKI GLLSALREHA RVLSKTSKPA PCAQAKSGKD -TTPAPEELT ENSBTAP00000033949/1-677 PNNKLLTTKI GLLSALREHS RVLSKTSKPA PCAQTK---- ---------- 301 350 bmy_10015T0/1-405 -RCPGGAGP- ---------- ---------- ---LWGLW-- ---WPCRGEA ENSTTRP00000016126/1-654 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000368592/1-673 WTSPGYLRPQ RVLRMEEFFP ETYRLDLKHE REAFFTLFDE TQIWICKPTA BACU001186/1-531 WSSPGRLGPQ RVLKMEDFFP ETYRLDVRDE REAFFTLFDE TQMWICKPTA ENSBTAP00000033949/1-677 ---------- -VLKMEDFFP ETYRLDIRDE REAFFTLFDE TQMWICKPTA 351 400 bmy_10015T0/1-405 ---------- ---------- -----LVGAP RGGRASRRCP ---------- ENSTTRP00000016126/1-654 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXYIQ ENSP00000368592/1-673 SNQGKGIFLL RNQEEVAALQ AKTRSMEDDP IHHKTPFRGP QARVVQRYIQ BACU001186/1-531 SNQGKGIFLL RNQEEVAALQ AKTQSIEDDP TYRKMPFRAP QARVVQRYIQ ENSBTAP00000033949/1-677 SNQGKGIFLL RNQEEVTTLQ AKTQSIEDDP IYRKMPFRAP QARVVQRYIK 401 450 bmy_10015T0/1-405 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016126/1-654 NPLLLDGKKF DVRSYLLIAC TMPYMVFFGH GYARLTLGLY DPHSSDLCGH ENSP00000368592/1-673 NPLLVDGRKF DVRSYLLIAC TTPYMIFFGH GYARLTLSLY DPHSSDLGGH BACU001186/1-531 NPLLLDGKKF DVRSYLLIAC AMPYMVFFGH GYARLTLGLY DPHSSDLGGH ENSBTAP00000033949/1-677 NPLLLDGKKF DVRSYLLIAC AMPYMVFFGH GYARLTLGLY DPHSSDLSGH 451 500 bmy_10015T0/1-405 -ASQFMQKKS PLYLLLKDDT VWSMEHLNHY INDKFREAKR LPRDWVFTTF ENSTTRP00000016126/1-654 LTNQFMQKKS PLYLLLKDDT VWSMEHLNRH INDKFRKGQG LPRDWVFTTF ENSP00000368592/1-673 LTNQFMQKKS PLYMLLKEHT VWSMEHLNRY ISDTFWKARG LAKDWVFTTL BACU001186/1-531 LTNQFMQKKS PLYLLLKDDT VWSMEHLNRY INDKFREAKR LPRDWVFTTF ENSBTAP00000033949/1-677 LTNQFMQKKS PLYVLLKEDT VWSMEHLNRY INDKFHKTRG LPRDWVFTTF 501 550 bmy_10015T0/1-405 TVRARPAHPA LGGAGGQDRR ARGLGALGPR HVRAWAGLPL GVRAAKRMQQ ENSTTRP00000016126/1-654 A--------- ---------- ---------- ---------- -----KRMQQ ENSP00000368592/1-673 K--------- ---------- ---------- ---------- -----KRMQQ BACU001186/1-531 T--------- ---------- ---------- ---------- -----KRMQQ ENSBTAP00000033949/1-677 T--------- ---------- ---------- ---------- -----KRMQQ 551 600 bmy_10015T0/1-405 ILAHCFLSVK SKLKCKLGYF DLIGCDFLID ENFKVLL--- ---------- ENSTTRP00000016126/1-654 IMAHCFLSVK SKLKCKLGYF DLIGCDFLID ENFKVWLLEM NSNPALHTNC ENSP00000368592/1-673 IMAHCFLAAK PKLDCKLGYF DLIGCDFLID DNFKVWLLEM NSNPALHTNC BACU001186/1-531 ILAHCFLSVK SKLKCKLGYF DLIGCDFLID ENFKCW---- ---------- ENSBTAP00000033949/1-677 IMAHCFLAVK AKLECKLGYF DLIGCDFLID ENFKVWLLEM NSNPALHTNC 601 650 bmy_10015T0/1-405 ---------- ---------- ---------- ---------- ---------R ENSTTRP00000016126/1-654 EVLKEVIPGV VTETLXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000368592/1-673 EVLKEVIPGV VIETLDLVLE TFRKSLRGQK MLPLLSQRRF VLLHNGEADP BACU001186/1-531 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000033949/1-677 EVLKEVIPGV VMETLDLALE TFQKSLRSEK MLPLLSQRRF VLLHNGETDL 651 700 bmy_10015T0/1-405 RPGGAG---- ---------P SRQVQEAGAL CAHPDHSGG- ---------- ENSTTRP00000016126/1-654 XXXXXX---- ---------X XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000368592/1-673 RPHLGGSCSL RRWPPL---P TRQAKSSGPP MPHAPDQPGA RRPAP----- BACU001186/1-531 ---------- ---------P RC-------- --------GC WR-------- ENSBTAP00000033949/1-677 WPCLGGSRNV PRPPLPPFRP TCDAAPLEPP LLRATDRPGA RRPAPHRGLG 701 750 bmy_10015T0/1-405 ------PLEQ AVMHPP---- ---------- ---------- ---------- ENSTTRP00000016126/1-654 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXSPG ENSP00000368592/1-673 -----PPLVP QRPRPPGPDL DSAHDGEPQA PGTEQSGTGN RHPAQEPSPG BACU001186/1-531 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000033949/1-677 GAPVRPSSAQ RRPRPPVPAP DGALSGDPEA QGGGQPRVDD ADQVRELSPG 751 800 bmy_10015T0/1-405 ---------- ---- ENSTTRP00000016126/1-654 SSEEERKNA- ---- ENSP00000368592/1-673 TAKEEREEPE NARP BACU001186/1-531 ---------- ---- ENSBTAP00000033949/1-677 PAEEERKNAG HRGS