KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:44:05 2014 Check: 00 .. Name: ENSP00000311122/1-209 Len: 231 Check: 6763 Weight: 1.00 Name: ENSBTAP00000033976/1-195 Len: 231 Check: 4956 Weight: 1.00 Name: ENSTTRP00000010649/1-189 Len: 231 Check: 5731 Weight: 1.00 Name: bmy_10051T0/1-156 Len: 231 Check: 5231 Weight: 1.00 Name: BACU001163/1-225 Len: 231 Check: 3388 Weight: 1.00 // 1 50 ENSP00000311122/1-209 MARGPLAARG LRLLLPLLPL LPL------- ---------- ----LPLPQV ENSBTAP00000033976/1-195 MFSRAPADRG LLLLPPLLP- ---------- ---------- ------LPQV ENSTTRP00000010649/1-189 ---------- --LLPPLQ-- ---------- ---------- ------LPQV bmy_10051T0/1-156 ---------- ---------- ---------- ---------- ---------- BACU001163/1-225 MFAGPLGDRG LLLLPPLLPL PQVGRGALVH RGAGRRSARP GPGSPLFPQV 51 100 ENSP00000311122/1-209 ALGFADGSCD PSDQCPPQAR WSSLWHVGLI LLAVLLLLLC GVTAGCVRFC ENSBTAP00000033976/1-195 ALGFVEGSCD PSDQCPPQAR WSSLWHVGLI LLTALLLLLC GVSASCVRFC ENSTTRP00000010649/1-189 ALGFAEGSCD PSDQCPPQAR WSSLWHVGLL LLAVLLLLLC GATASCVRFC bmy_10051T0/1-156 ------GGSG SS---PPR-- --------LI LLTVVLLLLC GVTASCVRFC BACU001163/1-225 ALGFAEGSCD PSDQCPPQAR WSSLWHVGLI LLTVVLLLLC GVTASCVRFC 101 150 ENSP00000311122/1-209 CLRKQAQAQP HLPPARQPCD VAVIPMDSDS PVHSTVTSYS SVQYPLGMRL ENSBTAP00000033976/1-195 HLRKRAHSQP HLPPAPEPCD LTAIPMDSDS PAHSTVTSYS SVQCWLGMQL ENSTTRP00000010649/1-189 CLRKRAHAQP HLPSAPESCD LTAIPADSDS PMHSTVSSYS SVQYPLGMRL bmy_10051T0/1-156 CLRKRAHAQP RLPSAPEPCD PIAIPADSDS PMHSTVSSYS SVQYPLGMRL BACU001163/1-225 CLRKQAHAQP HLPSVPEPCD PTAIPADSDS PVHSTVSSYS SVQYPLRMRL 151 200 ENSP00000311122/1-209 PLPFGELDLD SMAPPAYSLY TPEPPPSYDE AVKMAKPREE GPALSQKPSP ENSBTAP00000033976/1-195 PLPFGELDLD STTLPAYSLY APEPPPSYEE AIKMTKTRQE SHPSPCNPAS ENSTTRP00000010649/1-189 PLPLGELDLD SVTPPAYSLY APELPPSYDE AVKMAKTIQE EPPPSQ-PSP bmy_10051T0/1-156 PLSFGELDLD SMTPPAYSLY APELPPSYEE AVKMAKTRQE EPPPSQEPSP BACU001163/1-225 PLPFGELDLD SMTPPAYSLY APELPPSYEE AVKMAKTRQE EPPPSQEANP 201 250 ENSP00000311122/1-209 LLGASGLETT PVPQESGPNT QLPPCSPGAP - ENSBTAP00000033976/1-195 -PGASCLETP PGLQEPGPNA QDP------- - ENSTTRP00000010649/1-189 LPEASCLETP PGPQGWGRNA Q-PLCSPGAS R bmy_10051T0/1-156 LPEASCLEPP PGPQEWGRNA QHPWL----- - BACU001163/1-225 LPEASCLEPP PGPQEWGRNA QHPWL----- -