KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:44:06 2014 Check: 00 .. Name: ENSTTRP00000009953/1-632 Len: 668 Check: 5445 Weight: 1.00 Name: ENSP00000367173/1-634 Len: 668 Check: 8284 Weight: 1.00 Name: ENSBTAP00000034008/1-556 Len: 668 Check: 5641 Weight: 1.00 Name: bmy_09535T0/1-548 Len: 668 Check: 6424 Weight: 1.00 Name: BACU001119/1-434 Len: 668 Check: 9377 Weight: 1.00 // 1 50 ENSTTRP00000009953/1-632 MSGAIFAPLE GPGALDAASG PPLVCPLCRA QYEHPCLLDC FHDFCAGCLR ENSP00000367173/1-634 MSGAIFGPLE GPSSLDAPSI HPLVCPLCHV QYERPCLLDC FHDFCAGCLR ENSBTAP00000034008/1-556 MSGAIFTSLE GPGALDGTSG HPLVCPLCHA QYERPCLLDC FHEFCAGCLR bmy_09535T0/1-548 --MGIRLPVH G-------RV EPELCP---- ---------- ---------- BACU001119/1-434 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000009953/1-632 GRTADGRLAC PLCQHQTVVK GPSGLPPVDR LLQFLVDSSG DGMDVVRCAN ENSP00000367173/1-634 GRATDGRLTC PLCQHQTVLK GPSGLPPVDR LLQFLVDSSG DGVEAVRCAN ENSBTAP00000034008/1-556 GRAADGRLAC PLCQHQTVVK GPSGLPPVDR LLQFLVDSSG DGTEVVRCAN bmy_09535T0/1-548 ---------- ---------- ---------- ---------- ---------- BACU001119/1-434 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000009953/1-632 CDQECGKQXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000367173/1-634 CDLECSEQDV ETTYFCNTCG QPLCARCRDE THRARMFARH DIVALGQRSR ENSBTAP00000034008/1-556 CDLECGKQDA ETTYFCNTCG QPLCARCRDE THRARMFARH DIVALGQRSR bmy_09535T0/1-548 -------QDA ETTYFCNTCG QPLCARCRDE THRARMFARH DIVALGQRSR BACU001119/1-434 ---------- ---------- ---------- -----MFARH DIVALGQRSR 151 200 ENSTTRP00000009953/1-632 XXXXXXX--- ---------- ---------- ---------- -XXXXXXXXX ENSP00000367173/1-634 DVPQKCT--- ---------- ---------- ---------- -LHAEPYLLF ENSBTAP00000034008/1-556 DVLQKCT--- ---------- ---------- ---------- -LHAEPYVLF bmy_09535T0/1-548 DVLQKCSECG VPDGDQRWAG MGAGTGRSPH RRPPPRAPAA ALHAEPYIMF BACU001119/1-434 DVLQKCT--- ---------- ---------- ---------- -LHAEPYIMF 201 250 ENSTTRP00000009953/1-632 XXXXXXXXXX XXXXXXXXES RAHCVDLESA YVQGCERLQQ AMLAVKALQT ENSP00000367173/1-634 STDKKLLLCI RCFRDMQKES RAHCVDLESA YVQGCERLEQ AVLAVKALQT ENSBTAP00000034008/1-556 STDKKSLLCI RCFRDMQGES RVHCVDLESA YVQGCERLQQ AVLEVKALQT bmy_09535T0/1-548 STDKKSLLCI RCFRDMQRES RAHCVDLESA YVQGCERLQQ AML------T BACU001119/1-434 STDKKSLLCI RCFRDMQGES RAHCVDLESA YVQGCERLQQ AMLAVKALQT 251 300 ENSTTRP00000009953/1-632 ATGEAIALLQ AMVDEVRRSA ADEEAAIHAL FGSMQDKLAE RKALLLQAVQ ENSP00000367173/1-634 ATREAIALLQ AMVEEVRHSA AEEEDAIHAL FGSMQDRLAE RKALLLQAVQ ENSBTAP00000034008/1-556 ATRVKGELLQ AMVEEVRRSA AEEEAAIQAL FSSMQDKLSE RKALLLQAVQ bmy_09535T0/1-548 ATREAIALLQ AMVDEVRRSA ADEEAAIHAL FGSMQDKLAE RKALLLQAVQ BACU001119/1-434 ATREAIALLQ AMVDEVRRSA ADEEAAIHAL FGSMQDKLAE RKALLLQAVQ 301 350 ENSTTRP00000009953/1-632 SQYEEKDKAF KEQLSHLATL LPTLQVHLAI CSSFLSLAN- AEFLDLGYEL ENSP00000367173/1-634 SQYEEKDKAF KEQLSHLATL LPTLQVHLVI CSSFLSLANK AEFLDLGYEL ENSBTAP00000034008/1-556 ---------- ---------- ---------- -----SLANK AEFLDLGYEL bmy_09535T0/1-548 SQYEEKDKAF KEQLSHLATL LPTLQVHLVI CSSFLSLANK AEFLDLGY-- BACU001119/1-434 SQYEEKDKAF KEQLSHLATL LPTLQVHLVI CSSFLSLANK AEFLDLGYEL 351 400 ENSTTRP00000009953/1-632 VERLQGIVTR PHRLRPAQSS KIASDHRAEF ARCLEPLLLL GPRRAAGAGG ENSP00000367173/1-634 MERLQGIVTR PHHLRPIQSS KIASDHRAEF ARCLEPLLLL GPRRVAAAAS ENSBTAP00000034008/1-556 MERLQGIVTR PHRLRPAQSS KITSDHRAEF ARCLEPLLLL GPRRAAGAGG bmy_09535T0/1-548 ---------- ---------- -IASDHRAEF ARCLEPLLLL GPRRAAGAGG BACU001119/1-434 VE-------- ---------- ---------- --RLQGIV-- ---------- 401 450 ENSTTRP00000009953/1-632 GTSTLAGGSG PKVLMGPSCP SPVGKMLGSP VQKPTLHRSI STKVLLAEGD ENSP00000367173/1-634 GANTLAGGLG PKALTGPHCP SPVGKMSGSP VQKPTLHRSI STKVLLAEGE ENSBTAP00000034008/1-556 GTSTLTGGLG PKVLRGPGCP SPVGKMLGSP VQKPTLHRSI STKVLLAEGD bmy_09535T0/1-548 GTSTLAGGSG PKMLMGPSCP SPVGKMLGSP VQKPTLHRSI STKVLLAEGD BACU001119/1-434 --------TR PHRLR----P AQSSKMLGSP VQKPTLHRSI STKVLLAEGN 451 500 ENSTTRP00000009953/1-632 DSPFTEHCRH FENSYRRLQA EMQNLKDQVQ ELHRDLTKHH SLIKAEIMGD ENSP00000367173/1-634 NTPFAEHCRH YEDSYRHLQA EMQSLKDQVQ ELHRDLTKHH SLIKAEIMGD ENSBTAP00000034008/1-556 ASPFTEHCRH YEDSYRRLQA EMQNLKDQVQ ELHRDLTKHH SLIKAEIMGD bmy_09535T0/1-548 DSPFTEHCRH FENSYRRLQA EMQNLKDQVQ ELHRDLTKHH SLIKAEIMGD BACU001119/1-434 DSPFTEHCRH FENSYRRLQA EMQNLKDQVQ ELHRDLTKHH SLIKAEIMGD 501 550 ENSTTRP00000009953/1-632 ILHKSLQVDT QIALEYASVE GMRAVFQEIW EESYQRVANE QEIYEAQLHD ENSP00000367173/1-634 VLHKSLQLDV QIASEHASLE GMRVVFQEIW EEAYQRVANE QEIYEAQLHD ENSBTAP00000034008/1-556 ILHKALQVDA QIASEYASVE GLRAVFQEIW EDSYQRVANE QEIYEAQLHD bmy_09535T0/1-548 ILHKSLQVDT QIALEXASVE GMRAVFQEIW EESYQRVANE QEIYEAQLHD BACU001119/1-434 ILHKSLQVDT QIALEYASVE GMRAVFQEIW EESYQRVANE QEIYEAQLHD 551 600 ENSTTRP00000009953/1-632 LLQLKQENAY LTTITKQITP YVRSIAKVKE RLEPXXXXXX XXXXXXXXXX ENSP00000367173/1-634 LLQLRQENAY LTTITKQITP YVRSIAKVKE RLEPRFQAPV DEQSESLQNT ENSBTAP00000034008/1-556 LLQLKQENAY LTTITKQITP YIRSIAKVKE RLEPRFQVPV DEPSDHPQNT bmy_09535T0/1-548 LLQLKQENAY LTTITKQITP YVRSIAKVKE RLEPRFQAPV DEPSDHLQNT BACU001119/1-434 LLQLKQENAY LTTITKQITP YVRSIAKVKE RLEPRFQAPV DEPSDHLQNT 601 650 ENSTTRP00000009953/1-632 XXXXXXXXXX XXNDPGSVSE RREKTSEPR- NSRTLSSLAE EPPLKNKDAH ENSP00000367173/1-634 HDDSRNNAAS ARNNPGSVPE KREKTSEPKG NSWAPNGLSE EPLLKNMDHH ENSBTAP00000034008/1-556 HDDGVNAEAP ARVSTLK--- ---------- ---------- ---------- bmy_09535T0/1-548 HDDGVNGEAQ ARSDPVSVSE RREKTSDPR- NSRTLSSLAE EPPLKNKDSH BACU001119/1-434 HDDGVNGEAQ ASSKTQTVSA RSQFQ----- VLWLELDFVS PRVLVLITVT 651 700 ENSTTRP00000009953/1-632 RPKPKNGGDV PTWRERPA ENSP00000367173/1-634 RSKQKNGGDV PTWREHPT ENSBTAP00000034008/1-556 ---------- PAMEKEVS bmy_09535T0/1-548 RPKPKNGGDV PTWRERPA BACU001119/1-434 R------DGI PVCVEDVT