KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:44:09 2014 Check: 00 .. Name: ENSBTAP00000034065/1-1082 Len: 1513 Check: 4722 Weight: 1.00 Name: ENSTTRP00000011132/1-1077 Len: 1513 Check: 1848 Weight: 1.00 Name: bmy_11172T0/1-1143 Len: 1513 Check: 1949 Weight: 1.00 Name: BACU009609/1-933 Len: 1513 Check: 6076 Weight: 1.00 // 1 50 ENSBTAP00000034065/1-1082 MDIREEKHIN TALQVSSFRT ALRGFERLVE HVAAQKRDE- RAGVFAPKED ENSTTRP00000011132/1-1077 MDIREEKHFN LALQVSNFRT ALGGFEKLVE RIAAQKRDE- RAGFFIQKED bmy_11172T0/1-1143 ---------- ---------- -----MSVLP STGSRRRDVI KCIVKIPQLD BACU009609/1-933 MDIREEKRFN LALQISNFRT ALRGFEKLVE RIAAQKRDE- RAGFFIQKED 51 100 ENSBTAP00000034065/1-1082 AVDYDKFYKM VQELFGPEVK SQDVKCFYRK LCNNPDASID WCEIFGYFSS ENSTTRP00000011132/1-1077 AIDYDKFYAT VQELFGPEVK NQDVKCFYRK LCNNPDASID WCEXXXXXXX bmy_11172T0/1-1143 ---------- ---LLITASQ KGLITVFNSQ M--------- ---------- BACU009609/1-933 AIDYDKFYAT VQELFGPEVK NQDVKCFYRK LCNNPDASID WCEM------ 101 150 ENSBTAP00000034065/1-1082 EEDSLINQMD EENLVFLVSR KQRVVISGSR RRDVIKCIVK IPQLDLLITA ENSTTRP00000011132/1-1077 XXXXXXXXXX XXXXXXXXXX XXXXXXXXSR RRDVIKCIVK IPQLDLLVTA bmy_11172T0/1-1143 ---------- ---------- ---------- ---------- ---------- BACU009609/1-933 ---------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000034065/1-1082 SQKGMITVFN SQDTSWITGC DYLSQLKRIV ATTERTIIVW DYKAQGSSQE ENSTTRP00000011132/1-1077 SQKGLITVF- --DTSWITGC DYLSQLKRIV ATTERTIIVW DHKAQ-SSQE bmy_11172T0/1-1143 ---------- ---------- -------RVQ TSTNVT---- ---------E BACU009609/1-933 ---------- ---------- -------RVQ TSTNIT---- ---------E 201 250 ENSBTAP00000034065/1-1082 NYFVIKPMDH CLLCVCVVSL PDQLCRDDIL LGDDGGFVSK FTVNSEDFGL ENSTTRP00000011132/1-1077 NYFVIKPMDH CLLCVCVVSL PDQLCQDDIL LGDDGGFVNK FTVNSDDFGL bmy_11172T0/1-1143 NYFVIKPMDH CLLCVCVVSL PDQLCRDDIL LGDDGGFVNK FTVNSDDFGL BACU009609/1-933 NYFVIKPMDH CLLCVCVVSL PDQLCRDDIL LGDDGGFVNK FTVNSDDFGL 251 300 ENSBTAP00000034065/1-1082 KQAKSKKRLQ NQVLDSKNFK SVKRKLHNDW VMKIRYISAL HCFGSCSLDN ENSTTRP00000011132/1-1077 KQAKSKKKLQ YQVLDSKNFK SVKRKLHNDW VMKIRYISDL NCFGSCSADS bmy_11172T0/1-1143 KQAKSKKNLQ NQVLDSKNFK SVKRKLHNDW VMKIRYISAL NCFGSCSLDS BACU009609/1-933 KQAKSKKNLQ NQVLDSKNFK R--------- ---------- ---------- 301 350 ENSBTAP00000034065/1-1082 VHSLVLESLK RIEDNLPVRE FSMPRGANTF CYCIKANVIV TGGDDKVLRL ENSTTRP00000011132/1-1077 VHSLVLESLK RLEDNLPVRE FSMPRGANTF CYSRKANVIV TGGDDKVLRL bmy_11172T0/1-1143 VHSLVLESLK RLEDNLPVRE FSMPRGANTF CYSIKANVIV TGGDDKVLRL BACU009609/1-933 ---------- ------PVRE FSMPRGANTF CYSIKANVIV TGGDDKVLRL 351 400 ENSBTAP00000034065/1-1082 WHPNISTKPV GKLVGHMFSI TEIVTNEKEQ HVISLSSAKV FRVWDIQTLS ENSTTRP00000011132/1-1077 WHPNISTKPV GKLVGHMFSI TEIVTNETDQ HVISLSSAKV FRVWNIQTLS bmy_11172T0/1-1143 WHPNISTKPV GKLVGHMFSI TEIVTNEKDQ HVISLSSAKV FRVWDIQTLS BACU009609/1-933 WHPNISTKPV GKLVGHMFSI TEIVTNEKDQ HVISLSSAKV FRVWDIQTLS 401 450 ENSBTAP00000034065/1-1082 LLQVFHDSQG GPGDMQIYSM IFDSNHRVLI TGSSVMDMYP LTRMIQDTKQ ENSTTRP00000011132/1-1077 LLQVFHDSQG GPGDMQIYSM VFDSNHGMLV TGSRVMDMYP LTRMIQDAKR bmy_11172T0/1-1143 LLQVFHDSQG GPGDMQIYSM VFDSNHGMLV TGSSVMDMYP LTRMIQDMKQ BACU009609/1-933 LLQVFHDSQG GPGDMQIYSM VFDSNHGMLV TGSSVMDMYP LTRMIQDAKQ 451 500 ENSBTAP00000034065/1-1082 VPHTHEREIN VMLYNKYFHQ VLTICSESII KVWELETGLQ IYQILDPHGF ENSTTRP00000011132/1-1077 VPHTHEREIN VMLYNKYFHQ VLTICSESLI KVWELETGLQ IYQILDPHGF bmy_11172T0/1-1143 VPHTHEREIN VMLYNKYFHQ VLTICSESII KVWELETGLQ MYQILDPHGF BACU009609/1-933 VPHTHEREIN VMLYNKYFHQ VLTICSESVI KVWELETGLQ MYQILDPHGF 501 550 ENSBTAP00000034065/1-1082 NVELTAAAID ESGFIFATGA YNGTVKIWDF GSGQELKVLP EGKDWKEEEH ENSTTRP00000011132/1-1077 NVELTSAAID ESGFLFATGA YNGTVKIWDF GSGQEMKVLP EGKDWKEEEH bmy_11172T0/1-1143 NVELTSAAID ESGFLFATGA YNGTVKIWDF GSGQEMKVLP EGKDWKEEEH BACU009609/1-933 NVELTSAAID ESGFLFATGA YNGTVKIWDF GSGQEMKVLP EGKDWKEEEH 551 600 ENSBTAP00000034065/1-1082 WLHRLIFLKA QEKHQYLLLS LERNGKIKMI QGKEDDIYLA VIWELPDVVP ENSTTRP00000011132/1-1077 WLQRLIFLKA QEKHQYLILA LERNGKIKMI QGKEDDIYLA VIWELPDVVP bmy_11172T0/1-1143 WLQRLIFLKA QEKHQYLILA LERNGKIKMI Q--------- ---------- BACU009609/1-933 WLQRLIFLKA QEKHQYLILA LERSGKIKMI QGKEDDIYLA VIWELPDVVP 601 650 ENSBTAP00000034065/1-1082 VLQSGNRIVH LRVSTKERSM AIPFPDVELI VEKNFSQRVG NPAVSIEVNC ENSTTRP00000011132/1-1077 VLQNGNRIVH LRMSAKDRSM AIPFPDVELI VEKNFSQYVD NPAISIEVNC bmy_11172T0/1-1143 ---------- ---------- ---------- ---------- NPAISIEMNC BACU009609/1-933 VLQNGNRIVH LRMSAKDRSM AIPFPDVELI VEKNFSQHVD NPAISIEMNC 651 700 ENSBTAP00000034065/1-1082 IDLLQTEGYN LIAAGTLNGV IILWNFVTST VKEVYRPEDC FTVDPDLDPK ENSTTRP00000011132/1-1077 IDLLQVEGYN LIAAGTLNGV IILWNFGTST VKEVYRPEDC FTVDPDLDPK bmy_11172T0/1-1143 IDLLQVEGYN LIAAGTLNGV IILWNFVTST VKEVYRPEDC FTVDPDLDPK BACU009609/1-933 IDLLQVEGYN LIAAGTLNGV IILWNFVTST VKEVYRPEDC FTVDPDLDPK 701 750 ENSBTAP00000034065/1-1082 RFRINDILFL FRNPECVRRS SQDSVCSSSQ CDSSKGPQSS ---------- ENSTTRP00000011132/1-1077 RFRINDILFL FRKPECARRS SQDSICSSSQ CESSKGPQSS ---------- bmy_11172T0/1-1143 RFRINDILFL FRNPECARRS SQDSICSSSQ CDSSKGPQSS ---------- BACU009609/1-933 RFRINDILFL FRNPECARRS SQDSICSSSQ CDSSKGPHSS KHLVYLISFQ 751 800 ENSBTAP00000034065/1-1082 ---------- --KGSKQSIH ESELKGEQTD VAVREQQPVD KKPPGGTNET ENSTTRP00000011132/1-1077 ---------- --KESKQSIH DSEVKXXXXX XXXXXXXXXX XXXXXXXXXX bmy_11172T0/1-1143 ---------- ---------- ---------- ---------- ---------- BACU009609/1-933 CHRNIISFSP RIQGSKQSIH DSEQK----D VTVGEQQPVD KKHLESTNLT 801 850 ENSBTAP00000034065/1-1082 DAQPPPILVT AHEDGHLRLW TMEGRLLKDI LPFTKHAAIS LTSLFTDSCT ENSTTRP00000011132/1-1077 XXX-XXXXXX XXXXXXXXXX XXXGRLLKDI LPFTKHAAIS LTSLYTDSCT bmy_11172T0/1-1143 ---------- ---------- ---------- ---------- ---------- BACU009609/1-933 DTQ-PPILVT AHEDGHLRLW TLEGRLLKDI LPFTKHAAIS LTSLYTDSCT 851 900 ENSBTAP00000034065/1-1082 RILLTGNTEG HVILCNISSF LESPHDEKKF KQLLAWRAHS LEIVQIIYVE ENSTTRP00000011132/1-1077 RILLTGNVXX XXXXXXXXXX XXXXXXXXKV KQLLSWRAHS LEITQIIYVE bmy_11172T0/1-1143 ---------- ---------- -------KKF KQLLSWRAHS LEIIQIIYVE BACU009609/1-933 RILLTGNVEG HVILCSISSF LDPPHDEKKF KQLLSWRAHS LEIIQIIYVE 901 950 ENSBTAP00000034065/1-1082 EKQVVLTASI DGSVRLWHAL NGHYCGYFGQ RRTFELSQTS DFILPCDVTE ENSTTRP00000011132/1-1077 DKQVVLTASI DGSVRLWHAL NGHYCGYFGQ RRIFEISQTS DVILPCDVNE bmy_11172T0/1-1143 DKQVVLTASI DGSVRLWHAL NGHYCGYFGQ RRIFEISQTS DFILPCDVNE BACU009609/1-933 DKQVVLTASI DGSVRLWHAL NGHYCGYFGQ RRIFEISQTS DFILPCDVNE 951 1000 ENSBTAP00000034065/1-1082 YPIEIKEESK FTEKKLTYEY PLVFDRQRWQ KMSSMSLLFK RTPPKAFEVE ENSTTRP00000011132/1-1077 YPIEIKEESK FTEKKQKYEY PLVFDRQRWE KMSSMSLLFK RTPPKTFEVE bmy_11172T0/1-1143 YPIEIKEESK FTEKKQKYEY PLVFDRQRWK KMSSMSLLFK RTPPKAFEVE BACU009609/1-933 YPIEIKEESK FTEKKQKYEY PLVFDQQRWK KMSSMSLLFK RTPPKAFEVE 1001 1050 ENSBTAP00000034065/1-1082 HDFKFFKSLS SPKIRKHALE GFMTENREAG IVFGSLPIYR VPSPTSLRFL ENSTTRP00000011132/1-1077 HDFKYFNSLS SPKIRRHALE GFMTENREAG IVFGSLPIYR VPSPTSLRFL bmy_11172T0/1-1143 HDFKFFKSLS SPK------- ---------- ---------- VPSPTSLRFL BACU009609/1-933 HDFKFFKSLS SPKIRRHTLE GFMTENREAG IVFGSLPIYR VPSPTSLRFL 1051 1100 ENSBTAP00000034065/1-1082 PLIGSEAQRE SSDGIHGKKK GSHVQHEKVQ RRRSL----- ---------- ENSTTRP00000011132/1-1077 PLIGSEAQRD FSDGIPGKKK GSHVQHERVQ RRRSL----- ---------- bmy_11172T0/1-1143 PLIGSEARRD SSDGIPGKKK GSHVQHERKP SARSTAAEER SVNSSTTAQQ BACU009609/1-933 PLIGSEARRD SSDGIPGKKK GSHVQHERVS ---------- ---------- 1101 1150 ENSBTAP00000034065/1-1082 ---------- ---------- ---------- --------KR NLVPQVNLAS ENSTTRP00000011132/1-1077 ---------- ---------- ---------- --------KG NLVPQINLTS bmy_11172T0/1-1143 KKLEGYVGFA NLPNQVYRKS VKRGFEFTLM VVGESGLGKS TLINSLFLTD BACU009609/1-933 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSBTAP00000034065/1-1082 SFFPAIPK-- ---------- ---------- ---------- ---------- ENSTTRP00000011132/1-1077 SFFPAIPK-- ---------- ---------- ---------- ---------- bmy_11172T0/1-1143 LYSPEYPGPS HRIKKTVQVZ XSKXLIKEGX VQLLLTIVDT PGFXDAVDNS BACU009609/1-933 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSBTAP00000034065/1-1082 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011132/1-1077 ---------- ---------- ---------- ---------- ---------- bmy_11172T0/1-1143 NCWQPVIDYI DSKFEDYLNA ESRVNRRQMP DNRVQCCLYF IAPSGHGLKP BACU009609/1-933 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSBTAP00000034065/1-1082 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011132/1-1077 ---------- ---------- ---------- ---------- ---------- bmy_11172T0/1-1143 LDIEFMKRLH EKVNIIPLIA KADTLTPEEC QQFKKQIMKE IQEHKIKIYE BACU009609/1-933 ---------- ---------- ---------- ---------- ---------- 1301 1350 ENSBTAP00000034065/1-1082 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011132/1-1077 ---------- ---------- ---------- ---------- ---------- bmy_11172T0/1-1143 FPETDDEEEN KLVKKIKDRL PLAVVGSNTI IEVNGKRVRG RQYPWGVAEV BACU009609/1-933 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSBTAP00000034065/1-1082 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011132/1-1077 ---------- ---------- ---------- ---------- ---------- bmy_11172T0/1-1143 ENGEXCDFTI LRNMLIRTHM QDLKDVTNNV HYENYRSRKL AAVTYNGVDN BACU009609/1-933 ---------- ---------- ---------- ---------- ---------- 1401 1450 ENSBTAP00000034065/1-1082 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011132/1-1077 ---------- ---------- ---------- ---------- ---------- bmy_11172T0/1-1143 NKNKGQLTKS PLAQMEEERR EHVAKMKKME MEMEQVFEMK VXEKVQKLKD BACU009609/1-933 ---------- ---------- ---------- ---------- ---------- 1451 1500 ENSBTAP00000034065/1-1082 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011132/1-1077 ---------- ---------- ---------- ---------- ---------- bmy_11172T0/1-1143 SEAELQRRHE QMKKNLEAQH KELEEKRRQF EDEKANWEAQ QRILEQQNSS BACU009609/1-933 ---------- ---------- ---------- ---------- ---------- 1501 1550 ENSBTAP00000034065/1-1082 ---------- --- ENSTTRP00000011132/1-1077 ---------- --- bmy_11172T0/1-1143 RTLENNKKKG KIF BACU009609/1-933 ---------- ---