KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:44:16 2014 Check: 00 .. Name: ENSTTRP00000011175/1-505 Len: 666 Check: 6263 Weight: 1.00 Name: BACU017555/1-222 Len: 666 Check: 8279 Weight: 1.00 Name: bmy_02839T0/1-666 Len: 666 Check: 6942 Weight: 1.00 Name: ENSBTAP00000034182/1-507 Len: 666 Check: 651 Weight: 1.00 // 1 50 ENSTTRP00000011175/1-505 MAKWLN-YFS LGNSKTNSPP QPPRPDYREQ RRRGERPSQT P-AVPQAPSA BACU017555/1-222 MAKWLNKYFS LGNSKTKSPP QPPRPDYREQ RRRGERPSQP PQAVPQAPSA bmy_02839T0/1-666 MAKWLNKYFS LGNSKTKSPP QPPRPDYREQ RRRGERPSQP PQAVPQAPSA ENSBTAP00000034182/1-507 MAKWLNKYFS LGNSKTKSPP QPPRPDYREQ RRRGERPSQP PQAVPQAPAA 51 100 ENSTTRP00000011175/1-505 TSASCGTAAA SCFSATSGSL PDDSGSTSDL IRAYRAQKER DFEDPYNGPG BACU017555/1-222 TSASCGTAAA SCFSASSGSL PDDSGSTSDL IRAYRAQKER DFEDPYNGPG bmy_02839T0/1-666 TSASCGTAAA SCFSASSGSL PDDSGSTSDL IRAYRAQKER DFEDPYNGPG ENSBTAP00000034182/1-507 ASASCGTAAA SCFSASSGSL PDDSGSTSDL IRAYRAQKER DFEDPYNGPG 101 150 ENSTTRP00000011175/1-505 SSLGKLRAMC RLDYCGGGEP GGGQRAFSAS SATGAAGCSC TASSAGAPAS BACU017555/1-222 SAPRKLRAMC RLDYCGGGEP GGGQRAFSA- ---------- ---------- bmy_02839T0/1-666 SSLRKLRAMC RLDYCGGGEP GGGQRAFSAS SASGAPGCCC ASSGVGAAAS ENSBTAP00000034182/1-507 SSLRKLRAMC RLDYCGGGEP GGSQRAFSAS SASGAAGCCC ASSGAGAAAS 151 200 ENSTTRP00000011175/1-505 SSSSSGSPHL YRSSSERRPA TPAEVRYISP KHRLIKVESA AGGAAEPSVG BACU017555/1-222 ---------- ---SSERRPA TPAEVRYISP KHRLIKVESA AGGAAEHPGG bmy_02839T0/1-666 SSSSSGSPHL YRSSSERRPA TPAEVRYISP KHRLIKVESA AGGAAEHPGG ENSBTAP00000034182/1-507 SSSSSGSPHL YRSSSERRPA TPAEVRYISP KHRLIKVESA AGCAGDPPGG 201 250 ENSTTRP00000011175/1-505 SCSGGRTWSP TACGGKKLLN RCGASAAEES GAGKKD---- ---------- BACU017555/1-222 SCSGGRTWSP TACESKKLLN KCGASAAEES GAGKKD---- ---------- bmy_02839T0/1-666 SCSGGRTWSP TACGGKKLLN KCGASAAEES GAGKKDKTRA EVGLVLKKLR ENSBTAP00000034182/1-507 ACSGGRTWSP TACGGKKLLN KCGASAAEES GAGKKD---- ---------- 251 300 ENSTTRP00000011175/1-505 ---------- ---------- ---------- ---------- ---------- BACU017555/1-222 ---------- ---------- ---------- ---------- ---------- bmy_02839T0/1-666 NFSPSKQTLC VEESLNLLDM KPPEEAEIAS DGSQRSLNEE FGSKKSVDEE ENSBTAP00000034182/1-507 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000011175/1-505 ---------- ---------- ---------- -KVTIADDYS DPFDAKNDLK BACU017555/1-222 ---------- ---------- ---------- -KV------- ---------- bmy_02839T0/1-666 VWECGEGAPG SLHCLMGAVN TFRTTLVLIP SKVTIADDYS DPFDAKNDLK ENSBTAP00000034182/1-507 ---------- ---------- ---------- -KVTIADDYS DPFDAKNDLK 351 400 ENSTTRP00000011175/1-505 SKAGKGESAG YMEPYEAQRI M--------- ---------- ---------- BACU017555/1-222 ---------- ---------- ---------- ---------- ---------- bmy_02839T0/1-666 SKAGKGESAG YMEPYEAQRI MTEFQRDIKR SEGTETDGNA CPKADSGQLA ENSBTAP00000034182/1-507 SKTGKGESAG YMEPYEAQRI M--------- ---------- ---------- 401 450 ENSTTRP00000011175/1-505 ---------- ---------- ---------- -----TEFQR QESVRSQHKG BACU017555/1-222 ---------- ---------- ---------- ---------- ---------- bmy_02839T0/1-666 AKFLASSAHP PVRLLCGQSV EAAGDTTHPE QVFEPTEFQR QESVRSQHKS ENSBTAP00000034182/1-507 ---------- ---------- ---------- -----TEFQR QESVRSQHKG 451 500 ENSTTRP00000011175/1-505 IQLYDTPYEP EGPSMDSDSE STVSPQLRES KLPQDDDRPA DEYDQPWEWN BACU017555/1-222 ---------- ---------- ---------- ---------- ---------- bmy_02839T0/1-666 IQLYDTPYEP EGPSMDSDSE STVSPRLRES KLPQDDDRPA DEYDQPWEWN ENSBTAP00000034182/1-507 IQLYDTPYEP EGQSVDSDSE STISPRLRES KLPQDDDRPA DEYDQPWEWN 501 550 ENSTTRP00000011175/1-505 RVTIPALAXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU017555/1-222 ---------- ------RRPS ASP------- ---------- ---------- bmy_02839T0/1-666 RVTIPALAAQ FNGSEKRQSS PSPSRDRRRQ LRAPGGGFKP IKHGSPEFCG ENSBTAP00000034182/1-507 RVTIPALAAQ FNGSEKRQSS PSPSRDRRRQ LRAPGGGFKP IKHGSPEFCG 551 600 ENSTTRP00000011175/1-505 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU017555/1-222 ---------- ---------- ---------- ---------- ---------- bmy_02839T0/1-666 ILGERVDPAV PLEKQIWYHG AISRGDAENL LRLCKECSYL VRNSQTSRHD ENSBTAP00000034182/1-507 ILGERVDPAV PLEKQIWYHG AISRGDAENL LRLCKECSYL VRNSQTSRHD 601 650 ENSTTRP00000011175/1-505 XXXXXXSNQG FMHMKLAKTK EKYVLGQNSP PFDSVPEVIH YYTTRKLPIK BACU017555/1-222 ---------- ---------- ---------- ---EVPE--- ---------- bmy_02839T0/1-666 YSLSLKSNQG FMHMKLAKTK EKYVLGQNSP PFDSVPEVIH YYTTRKLPIK ENSBTAP00000034182/1-507 YSLSLKSNQG FMHMKLAKTK EKYVLGQNSP PFDSVPEVIH YYTTRKLPIK 651 700 ENSTTRP00000011175/1-505 GAEHLSLLYP VAVRTL BACU017555/1-222 ---------P LCTRVN bmy_02839T0/1-666 GAEHLSLLYP VAVRTL ENSBTAP00000034182/1-507 GAEHLSLLYP VAVRTL