KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:44:17 2014 Check: 00 .. Name: ENSP00000347883/1-1121 Len: 1361 Check: 2436 Weight: 1.00 Name: ENSBTAP00000034197/1-1162 Len: 1361 Check: 8675 Weight: 1.00 Name: BACU005628/1-1267 Len: 1361 Check: 1658 Weight: 1.00 Name: ENSTTRP00000015469/1-1115 Len: 1361 Check: 2447 Weight: 1.00 Name: bmy_03601T0/1-998 Len: 1361 Check: 9743 Weight: 1.00 // 1 50 ENSP00000347883/1-1121 MAAATVGRDT LPEHWSYGVC RDGRVFFIND QLRCTTWLHP RTGEPVNSGH ENSBTAP00000034197/1-1162 ---------- ---------- ---------- ---------- ---------- BACU005628/1-1267 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015469/1-1115 -MAAAVGRDT LLEHWSYGVC RDGRVFFIND QLRCTTWLHP RTGEPVNSGH bmy_03601T0/1-998 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000347883/1-1121 MIRSDLPRGW EEGFTEEGAS YFIDHNQQTT AFRHPVTGQF SPENSEFILQ ENSBTAP00000034197/1-1162 ---------- ---------- ---------- ---------- ---------- BACU005628/1-1267 ---------- ---------- FLFSHNQQTT AFRHPVSGQF SPENSEFILQ ENSTTRP00000015469/1-1115 MIRSDLPRGW EEGFTEEGAS YFIDHNQQTT AFRHPVSGQF SPENSEFILQ bmy_03601T0/1-998 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000347883/1-1121 EEPNPHMSKQ DRNQRPSSMV SETSTAGTAS TLEAKPGPKI IKSSSKVHSF ENSBTAP00000034197/1-1162 ------MSKQ ERNQRPSSMV SETSTAGTTS TVEAKPGPKI IKSSNKVHSF BACU005628/1-1267 EEPNPHMSKQ EGNQRPSSMV SETSTAGTTS TMEAKPGPKI IKSSSKVHSF ENSTTRP00000015469/1-1115 EEPNPHMSKR ERNQRPSSMV SETSTAGTTS TVEAKPGPKI IK-SSKVHSF bmy_03601T0/1-998 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000347883/1-1121 GKRDQAIRRN PNVPVVVRGW LHKQDSSGMR LWKRRWFVLA DYCLFYY--K ENSBTAP00000034197/1-1162 GKRDQAIRRN PSVPVVVRGW LHKQDSSGMR LWKRRWFVLA DYCLFYYKVK BACU005628/1-1267 GKRDQAIRRN PNVPVVVRGW LHKQDSSGMR LWKRRWFVLA DYCLFYY--K ENSTTRP00000015469/1-1115 GKRDQAIRRN PNVPVVVRGW LHKQDSSGMR LW-RRWFVLA -YCLYY---- bmy_03601T0/1-998 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000347883/1-1121 DSREEAVLGS IPLPSYVISP VAPEDRISRK YSFKAVHTGM RALIYNSSTA ENSBTAP00000034197/1-1162 DSREEVVLGS IPLPSYVISP VAPEDRISRK YSFKAVHTGM RALIYNS--- BACU005628/1-1267 DSREEVVLGS IPLPSYVIST VAPEDRISRK YSFKAVHMGM RALIYNSSTR ENSTTRP00000015469/1-1115 KSREEVVLGS IPLPSYVIST VAPEDRISRK YSFKAVHMGM RALIYNSSTR bmy_03601T0/1-998 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000347883/1-1121 GSQAEQSGMR TYYFSADTQE DMNAWVRAMN QAAQVLSRSS LKRDMEKVER ENSBTAP00000034197/1-1162 -SQAEQSGMR TYYFSADTQE DMNAWVRAMN QAAQVLSRSS LKRDTEKVER BACU005628/1-1267 GSQAEQSGMR TYYFSADTQE DMNAWVRAMN QAAQVLSRSS LKRDMEKVER ENSTTRP00000015469/1-1115 GSQAEQSGMR TYYFSADTQE DMNAWVRAMN QAAQVLSRSS LKRDMEKVER bmy_03601T0/1-998 ---------- ---------- ---------- ---------- ----MEKVER 301 350 ENSP00000347883/1-1121 QAVPQANHTE SCHECGRVGP GHTRDCPHRG HDDIVNFERQ EQEGEQYRSQ ENSBTAP00000034197/1-1162 QAVPQANHTE SCRECGRVGP GHARDCPHRS HEDSFGFERR EQEEDRYRS- BACU005628/1-1267 QAVPQANHTE SCRECGRMGP GHARDCSHRN HEDSFGFERR EQEEDRSRSQ ENSTTRP00000015469/1-1115 QAVPQANHTE SCRECGRVGP GHARDCSHRK REDSFGFERR EQEEDRYRSQ bmy_03601T0/1-998 QAVPQANHTE SCRECGRMGP GHARDCSHRN HEDSFGFERR EQEEDRYRSQ 351 400 ENSP00000347883/1-1121 RDPLEGKRDR SKARSPYSPA EEDALFMDLP TGPRGQQAQP QRAEKNGMLP ENSBTAP00000034197/1-1162 RDPLEGKRDR NKARSPYSQV EEDALFVDLP SGPRGQQAQP QRAERNGVLP BACU005628/1-1267 RDPLEGKRDR SKARSPYSPA EEDALFVDLP SGPRGQQAQP QRAERNGVLP ENSTTRP00000015469/1-1115 RDPLEGKRDR SKARSPYSPT EEDALFVDLP CGPRGQQAQP QRAERNGVLP bmy_03601T0/1-998 RDPLEGKRDR SKARSPYSPT EEDALFVDLP SGPRGQQAQP QRAERNGVLP 401 450 ENSP00000347883/1-1121 ASYGPGEQNG TGGYQRAFPP RTNPEKHSQR KSNLAQVEHW ARAQKGDSRS ENSBTAP00000034197/1-1162 VTSGPGEQNG TAGYQRAFPS RTNPEKHSQR KSSLAQVEQW AKAQKGDGRS BACU005628/1-1267 VTSGPGEQNG TGGYQRAFPS RTNPEKHSQR KSSLAHVEQW AKAQKADSRS ENSTTRP00000015469/1-1115 GTSGPGEQNG TGGYQRVFPS RTNAEKHSQR KSSLAHVEQW AKTQKADGRS bmy_03601T0/1-998 GTSGPGEQNG TGG------- ---------- ---------- ---------- 451 500 ENSP00000347883/1-1121 LPLDQTLPRQ GPGQSLSFPE NYQTLPKSTR HPSGGSSPPP RNLPSDYKYA ENSBTAP00000034197/1-1162 LPPEQTLPRQ GPSQHLSFPE NYQTLPRSSR HPSGGSSPPP RNLPSDYKYA BACU005628/1-1267 LPLDQTLPRQ GPSQSLSFPE NYQTLPKSSR HPSGGSSPPP RNLPSDYKYA ENSTTRP00000015469/1-1115 LPLDQTLPRH GPSQSLSFPE NYQTLPRSSR HPSGGSSPPP RNLPSDYKYA bmy_03601T0/1-998 LTLDQTLPRQ GPSQSLSFPE NYQTLPKSSR HPSGGSSPPP RNLPSDYKYA 501 550 ENSP00000347883/1-1121 QDRASHLKMS SEERRAHRDG TVWQLYEWQQ RQQFRHGSPT APICLGSPEF ENSBTAP00000034197/1-1162 QDRASHLKMS SEERRAHRDG TVWQLYEWQQ RQQFRHGSPT APICAGSPEF BACU005628/1-1267 QDRASHLKMS SEERRAHRDG TVWQLYEWQQ RQQFRHGSPT APICAGSPEF ENSTTRP00000015469/1-1115 QDRASHLKMS SEERRAHRDG TVWQLYEWQQ RQQFRHGSPT APICAGSPEF bmy_03601T0/1-998 QDRASHLKMS SEERRAHRDG TVWQLYEWQQ RQQFRHGSPT APICAGSPEF 551 600 ENSP00000347883/1-1121 TDQGRSRSML EVPRSISVPP SPSDIPPPGP PRVFPPRRPH TPAERVTVKP ENSBTAP00000034197/1-1162 AEQGRSRSML EVPRSISVPP SPSDLPPPGP PRAFPPRRPH TPAERVTVKP BACU005628/1-1267 ADQGRSRSML EVPRSISVPP SPSDIPPPGP LRAFPPRRPH TPAERVTVKP ENSTTRP00000015469/1-1115 TDQSRSRSML EVPRSISVPP SPSDIPPPGP LRAFPPRRPH TPAERVTVKP bmy_03601T0/1-998 TDQGRSRSML EVPRSISVPP SPSDIPPPGP LRAFPPRRPH TPAERVTVKP 601 650 ENSP00000347883/1-1121 PDQRRSVDIS LGDSPRRARG HAVK------ ---------- ---------- ENSBTAP00000034197/1-1162 PDQRMSVDIS LGGSPRKAWG PTTK------ ---------- ---------- BACU005628/1-1267 PDQRRSVDIS LGGSPRKAWG HTTKNSSHVD RRSMPSMGYM THTVSAPSLH ENSTTRP00000015469/1-1115 PDRRRSVDIS LSGSPRKTWG HTTK------ ---------- ---------- bmy_03601T0/1-998 PDQRRSVDIS LGGSPRKAWG HTTK------ ---------- ---------- 651 700 ENSP00000347883/1-1121 ---------- ------NSSH VDRRSMPSMG -YMTHTVSAP SLHGKSADDT ENSBTAP00000034197/1-1162 ---------- ------NSSH VDRRSMPSMG -YMTHTVSAP SLHGKSADDT BACU005628/1-1267 GKSLEELSLL LTRLRRHQAK LARVRNFAIG QLLQHELTFP TCQ---ADDT ENSTTRP00000015469/1-1115 ---------- ------NSSH LDRRSMPSMG -YMTHTVSAP SLHGKSADDT bmy_03601T0/1-998 ---LEELSLL LTRLRRHQAK LARVRNFAIG QLLQHELTFP TCQ---ADDT 701 750 ENSP00000347883/1-1121 YLQLKKDLEY LDLKMTGRDL LKDRSLKPVK IAESDTDVKL SIFCEQDRVL ENSBTAP00000034197/1-1162 YLQLKKDLEY LDLKMTGRDL LKDRSLKPVK IAESDIDVKL SVFCEQDRVL BACU005628/1-1267 YLQLKKDLEY LDLKMTGRDL LKDRSLKPVK IAESDIDVKL SIFCEQDRIL ENSTTRP00000015469/1-1115 YLQLKKDLEY LDLKMTGRDL LKDRSLRPVK IAESDIDVKL SVFCEQDRIL bmy_03601T0/1-998 YLQLKKDLEY LDLKMTGRDL LKDRSLKPVK IAESDIDVKL SVFCEQDRIL 751 800 ENSP00000347883/1-1121 QDLEDKIRAL KENKDQLESV LEVLHRQMEQ YRDQPQHLEK IAYQQKLLQE ENSBTAP00000034197/1-1162 QDLEDKIRAL KENKDQLESV LEVLHRQMEQ YRDQPQHLEK IAYQQRLLQE BACU005628/1-1267 QDLEDKIRAL KENKDQLESV LEVLHRQMEQ YRDQPQHLEK IAYQQRLLQE ENSTTRP00000015469/1-1115 QDLEDKIRAL KENKDQLESV LEVLHRQMEQ YRDQPQHLEK IAYQQRLLQE bmy_03601T0/1-998 QDLEDKIRAL KENKDQLESV LEVLHRQMEQ YRDQPQHLEK IAYQQRLLQE 801 850 ENSP00000347883/1-1121 DLVHIRAELS RESTEMENAW NEYLKLENDV EQLKQTLQEQ HRRAFFFQEK ENSBTAP00000034197/1-1162 DLVHIRAELS RESTEMENAW NEYLKLERDV EQLKQTLQEQ HRRAFFFQEK BACU005628/1-1267 DLVHIRAELS RESTEMENAW NEYLKLERDV EQLKQTLQEQ HRRAFFFQEK ENSTTRP00000015469/1-1115 DLVHIRAELS RESTEMENAW NEYLKLERDV EQLKQTLQER HRRAFFFQEK bmy_03601T0/1-998 DLVHIRAELS RESTEMENAW NEYLKLERDV EQLKQTLQEQ HRRAFFFQEK 851 900 ENSP00000347883/1-1121 SQIQKDLWRI EDVTAGLSAN KENFRILVES VKNPERKTVP LFPHPPVPSL ENSBTAP00000034197/1-1162 SQIQKDLWRI EDVIAGLSAN KENFRILVES VKNPERKTVP LLPHPPVPSL BACU005628/1-1267 SQIQKDLWRI EDVIAGLSAN KENFRILVES VKNPERKTVP LLPHPPVPSI ENSTTRP00000015469/1-1115 SQIQKDLWRI EDVTAGLSAN KENFRILVES VKNPERKTVP LFPYPPVPSI bmy_03601T0/1-998 SQIQKDLWRI EDVIAGLSAN KENFRILVES VKNPERKTVP LLPHPPVPSI 901 950 ENSP00000347883/1-1121 STSESKPPPQ PSPPTSPVRT PLEVRLFPQL QTYVPYRPHP PQLRKVTSPL ENSBTAP00000034197/1-1162 STSESKPPPQ PSPPTSPVRT PLEVRLFPQL QTYVPYRPHP PQLRKVTSPL BACU005628/1-1267 SSSESKPPLQ PSPPTSPMRT PLEVRLFPQL QTYVPYRPHP PQLRKVTSPL ENSTTRP00000015469/1-1115 SSSESKPSLL PSPPTSPMRT PLEVRLFPQL QTYVPYRPHL PQLRKVMSPL bmy_03601T0/1-998 SSSESKPPLQ PSPPTSPMRT PLEVRLFPQL QTYVPYRPHP PQLRKVTSPL 951 1000 ENSP00000347883/1-1121 QSPTKAKPKV EDEAPPRPPL PELYSPEDQP PAVPPLPREA TIIRHTSVRG ENSBTAP00000034197/1-1162 QSPTKTKPRV EDEAPPRPPL PELYSPEDQP PAVPPLPREA TIIRHTSVRG BACU005628/1-1267 QSPTKTKPKV EDEAPPRPPL PELYSPEDQP PAVPPLPKEA TIIRHTSVRG ENSTTRP00000015469/1-1115 QSPTKTKPKV EDEAPPRPPL PELYSPEDQP PAVPPLPREA TIIRHTSVRG bmy_03601T0/1-998 QSPTKTKPKV EDEAPPRPPL PELYSPEDQP PAVPPLPREA TIIRHTSVRG 1001 1050 ENSP00000347883/1-1121 LKRQSDERKR DRELGQCVNG DSRVELRSYV SEPELATLSG DMAQPSLGLV ENSBTAP00000034197/1-1162 LKRQSDERKR DREQGQCVNG DSRVELRSYV SEPELATFSG DTAPSSLGLV BACU005628/1-1267 LKRQSDERKR DREQGQCVNG DSRVELRSYV SEPELATFSG DMAPPSLGLV ENSTTRP00000015469/1-1115 LKRQSDERKR DREQGQCVNG DSRVELRSYV SEPELATFSG DMAPPSLGLV bmy_03601T0/1-998 LKRQSDERKR DREQGQCVNG DSRVELRSYV SEPELATFSG DMAPPSLGLV 1051 1100 ENSP00000347883/1-1121 GPESRYQTLP GRGLSGSTSR LQQSSTIAPY VTLRRGLNAE SSKATFPRPK ENSBTAP00000034197/1-1162 GSESRYQTLP GRGLSGSMSR LQQSSTIAPY VTLRRGLDAE SSKMTYPRPK BACU005628/1-1267 GSESRYQTLP GRGLSGSTSR LQQSSTIAPY VTLQRGLDAE SSKVTYPRPR ENSTTRP00000015469/1-1115 GSESRYQTLP GRGLSGSTSR LQQSSTIAPY VTLRRGLDAE SSKVTYPRPR bmy_03601T0/1-998 DSESRYQTLP GRGLSGSTSR LQQSSTIAPY VTLQRGLDAE SSKVTYPRPR 1101 1150 ENSP00000347883/1-1121 SALERLYSGD HQRGKMSAEE QLERMKRHQK ALVRERKRTL GQGERTGLPS ENSBTAP00000034197/1-1162 SALERLYSGD HQRGKMSAEE QLERMKRHQK ALVRERKRTL SQGERTGLPS BACU005628/1-1267 SALERLYSGD HQRGKMSAEE QLERMKRHQK ALVRERKRTL SQGERTGLPS ENSTTRP00000015469/1-1115 SALERLYSGD HQRGKMSAEE QLERMKRHQK ALVRERKRTL SQGERTGLPS bmy_03601T0/1-998 SALERLYSGD HQRGKMSAEE QLERMKRHQK ALVRERKRTL SQGERTGLPS 1151 1200 ENSP00000347883/1-1121 SRYLSRPLPG DLG------- ---------- ---------- ---------- ENSBTAP00000034197/1-1162 SRYLSQPLPG DLGSWKREQD FDLQLLERAV QGDRKDKEEN GWLKVQAMPV BACU005628/1-1267 SRHLSQPLPG DLGSWKREQD FDLQLLERAV QGDRKDKEEN GWLKVRAVPV ENSTTRP00000015469/1-1115 SRYLGQPLPG DLG------- ---------- ---------- ---------- bmy_03601T0/1-998 SRYLSQPLPG DLGSWKREQD FDLQLLERAV QGDRKDKEEN GWLKVQAMPV 1201 1250 ENSP00000347883/1-1121 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000034197/1-1162 TELDLEPQDY DVDISRELSK PEKVSIPERY VELDPEEPPS LEELQARYRK BACU005628/1-1267 TELDLEPQDY DVDISRELSK PEKVSIPERY VELDPEEPPS LEELQARYRK ENSTTRP00000015469/1-1115 ---------- ---------- ---------- ---------- ---------- bmy_03601T0/1-998 TELDLEPQDY DXDISRELSK PEKVSIPERY VELDPEEPPS LEELQARYRK 1251 1300 ENSP00000347883/1-1121 ---------- -SVC------ ---------- ---------- ---------- ENSBTAP00000034197/1-1162 AEKIRNILTR SSMCNLQPTA SQDRNSVADL DSQLQEQERI INISYALASE BACU005628/1-1267 AEKIRNILAR SSMCNLQPVS GQDRDSVAGL GSQLQEQERI INISYALASE ENSTTRP00000015469/1-1115 ---------- -SVC------ ---------- ---------- ---------- bmy_03601T0/1-998 AEKIRNILAR SSMCNLQPVS GQDRDSVASL GSQLQEQERI INISYALASE 1301 1350 ENSP00000347883/1-1121 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000034197/1-1162 ASQRSKQVAG EAAGAA---- ---------- ---------- ---------- BACU005628/1-1267 ASQRSKQVAA QQ-LALLPPK APLSSRTVPP YPPLSNGLHY TFV------- ENSTTRP00000015469/1-1115 ---------- ---------- ---------- ---------- ---------- bmy_03601T0/1-998 ASQRSKQVAA QRHFWELQAR PPPGPMDVPP QAQAVSGGQR GPRHPGPAAQ 1351 1400 ENSP00000347883/1-1121 ---------- - ENSBTAP00000034197/1-1162 ---------- - BACU005628/1-1267 ---------- - ENSTTRP00000015469/1-1115 ---------- - bmy_03601T0/1-998 GVWCCRSRRG A