KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:44:23 2014 Check: 00 .. Name: ENSTTRP00000004384/1-1056 Len: 1060 Check: 2347 Weight: 1.00 Name: ENSP00000308944/1-1009 Len: 1060 Check: 2920 Weight: 1.00 Name: ENSBTAP00000034398/1-1009 Len: 1060 Check: 1295 Weight: 1.00 Name: bmy_17319T0/1-536 Len: 1060 Check: 9907 Weight: 1.00 Name: BACU012795/1-921 Len: 1060 Check: 9801 Weight: 1.00 // 1 50 ENSTTRP00000004384/1-1056 LGSLRLTLPK RGLAAALGTC ARLFGPGAWK EAYPGGSRTK PGAVPLVILS ENSP00000308944/1-1009 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000034398/1-1009 ---------- ---------- ---------- ---------- ---------- bmy_17319T0/1-536 ---------- ---------- ---------- ---------- ---------- BACU012795/1-921 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000004384/1-1056 AMSWMFKRDP VWKYLQTVQY GVHGNFPRLS YPTFFPRFEF QDIIPPDDFL ENSP00000308944/1-1009 -MSWMFKRDP VWKYLQTVQY GVHGNFPRLS YPTFFPRFEF QDVIPPDDFL ENSBTAP00000034398/1-1009 -MSWMFKRDP VWKYLQTVQY GVHGNFPRLS YPTFFPRFEF QDIIPPDDFL bmy_17319T0/1-536 ---------- ---------- ---------- ---------- ---------- BACU012795/1-921 -MSWMFKRDP VWKYLQTVQY GVHGNFPRLS YPTFFPRFEF QDIIPPDDFL 101 150 ENSTTRP00000004384/1-1056 TSDEELDSVL FGTLRGHVVG LRYYTGVVNN NEMVALQREP DNPYDKNAIK ENSP00000308944/1-1009 TSDEEVDSVL FGSLRGHVVG LRYYTGVVNN NEMVALQRDP NNPYDKNAIK ENSBTAP00000034398/1-1009 TSDEELDSVL FGTLRGHVVG LRYYTGVVNN NEMVALQREP TNPYDKNAIK bmy_17319T0/1-536 ---------- ---------- ---------- ---------- ---------- BACU012795/1-921 TSDEELDSVL FGTLRGHVVG LRYYTGVVNN NEMVALQREP DNPYDKNAIK 151 200 ENSTTRP00000004384/1-1056 VNNVNGNQVG HIKKDLAAAL AYIMDNKLAQ VEGVVPFGAN NAFTMPLHMT ENSP00000308944/1-1009 VNNVNGNQVG HLKKELAGAL AYIMDNKLAQ IEGVVPFGAN NAFTMPLHMT ENSBTAP00000034398/1-1009 VNNVNGNQVG HIKKDLAAAL AYIMDNKLAQ IEGVVPFGAN NTFTMPLQMT bmy_17319T0/1-536 ---------- ---------- MYLLS----- ---------- ---------- BACU012795/1-921 VNNVNGNQVG HIKKDLAAAL AYIMDNKLAQ VEGVVPFGAN NAFTMPLHMT 201 250 ENSTTRP00000004384/1-1056 FWGKEENRKA VLDQLKKHGF KLGPAPKT-R FSLS---GGS RAGPSYSMPV ENSP00000308944/1-1009 FWGKEENRKA VSDQLKKHGF KLGPAPKTLG FNLESGWGSG RAGPSYSMPV ENSBTAP00000034398/1-1009 FWGKEENRKA VLDELKKHGF KLGPAPKSLG FSLESGWGSG RAGPSYSMPV bmy_17319T0/1-536 ---------- ---------- ---------- ---------- ---------- BACU012795/1-921 FWGKEENRKA VLDQLKKHGF KLGPAPKTLG FSLESGWGSG RAXXXXXXXX 251 300 ENSTTRP00000004384/1-1056 HAAVQITTEQ XXXXXXXXXX XXXXXXXXXX XXXXXAVETP LLPHQKQALA ENSP00000308944/1-1009 HAAVQMTTEQ LKTEFDKLFE DLKEDDKTHE MEPAEAIETP LLPHQKQALA ENSBTAP00000034398/1-1009 HAAVQMTTEQ LKTEFDKLFE DLKEDDKTQE MEPAEAIETP LLPHQKQALA bmy_17319T0/1-536 ---------- ---------- ---------- ---------- ---------- BACU012795/1-921 XXXXQMTTEQ LKTEFDKLFE DLKEDDKTQE MEPAEAIETP LLPHQKQALA 301 350 ENSTTRP00000004384/1-1056 WMVSRENSKE LPPFWEQRND LYYNTITNFS EKDRPENVHG GILADDMGLG ENSP00000308944/1-1009 WMVSRENSKE LPPFWEQRND LYYNTITNFS EKDRPENVHG GILADDMGLG ENSBTAP00000034398/1-1009 WMVSRENSEE LPPFWEQRSD LYYNTITNFS EKDRPENVHG GILADDMGLG bmy_17319T0/1-536 ---------- ---------- ---------- ---------- ---------- BACU012795/1-921 WMVSRENSKE LPPFWEQRSD LYYNTITNFS EKDRPENVHG GILADDMGLG 351 400 ENSTTRP00000004384/1-1056 KTLTAIAVIL TNFHDGKSLP IERIKKNQLK KECNVYDESM KLGGNNTSEK ENSP00000308944/1-1009 KTLTAIAVIL TNFHDGRPLP IERVKKNLLK KEYNVNDDSM KLGGNNTSEK ENSBTAP00000034398/1-1009 KTLTAIAVIL TNFHDGKSLP VERIKKNQLK KECNVYDESM ELGGNNTSEK bmy_17319T0/1-536 ---------- ---------- ---------- ---------- ---------- BACU012795/1-921 KTLTAIAVIL TNFHDGKSLP IERIKKNQLK KECNVYDESM KLGGNNTSEK 401 450 ENSTTRP00000004384/1-1056 ADGLIKEGSR CSGEPSISDD KGKNKYPKSE FSSSRPKRRK TAVQYTESSD ENSP00000308944/1-1009 ADGLSKDASR CSEQPSISDI KEKSKFRMSE LSSSRPKRRK TAVQYIESSD ENSBTAP00000034398/1-1009 AAGLIKEGSR CSGEPSISDV KTQNKYPKSE FSSSRSKRKP AAVQYTESSD bmy_17319T0/1-536 ---------- ---------- ---------- ---------- ---------- BACU012795/1-921 ADGLI----- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000004384/1-1056 SEESETNELP QKMKGKLKNT QSETKIREKA GSSKVKEDAE FACALTSSTP ENSP00000308944/1-1009 SEEIETSELP QKMKGKLKNV QSETKGRAKA GSSKVIEDVA FACALTSSVP ENSBTAP00000034398/1-1009 SEEVEPSELP QKMKGKLKRT QSETKIRVKA GSSKVQEDAE FACALTSSTP bmy_17319T0/1-536 ---------- ---------- ---------- ---------- ---------- BACU012795/1-921 ---------- ---KGKVKNT QSETKIREK- ---------- ---------- 501 550 ENSTTRP00000004384/1-1056 ATKKKMLKKR ASAVESSKKT DTEERPRTTL IICPLSVLSN WIDQFGQHIK ENSP00000308944/1-1009 TTKKKMLKKG ACAVEGSKKT DVEERPRTTL IICPLSVLSN WIDQFGQHIK ENSBTAP00000034398/1-1009 VTKKKMLKRG ASAVESSKKT DVEDKPRTTL IICPLSVLSN WMDQFGQHIK bmy_17319T0/1-536 ---------G ASAVESSKKT DIEERPRTTL IICPLSVLSN WIDQFGQHIK BACU012795/1-921 ---------G ASAVESSKKT DTEERPRTTL IICPLSVLSN WIDQFGQHIK 551 600 ENSTTRP00000004384/1-1056 SDVHLNFYVY YGPDRVRDPA LLSKQDIVLT TYNILTHDYG TKADSPLHSI ENSP00000308944/1-1009 SDVHLNFYVY YGPDRIREPA LLSKQDIVLT TYNILTHDYG TKGDSPLHSI ENSBTAP00000034398/1-1009 SDVHLNFYVY YGPDRVRDPT LLSKQDIVLT TYNILTHDYG TKGDSPLHSI bmy_17319T0/1-536 SDVHLNFYVY YGPDRVRDPA LLSKQDIVLT TYNILTHDYG TKADSPLHSI BACU012795/1-921 SDVHLNFYVY YGPDRVRDPA LLSKQDIVLT TYNILTHDYG TKADSPLHSI 601 650 ENSTTRP00000004384/1-1056 RWLRVILDEG HAIRNPNAQQ TKAVLDLEAE RRWVLTGTPI QNSLKDLWSL ENSP00000308944/1-1009 RWLRVILDEG HAIRNPNAQQ TKAVLDLESE RRWVLTGTPI QNSLKDLWSL ENSBTAP00000034398/1-1009 RWLRVILDEG HAIRNPNAQQ TKAVLDLEAE RRWVLTGTPI QNSLKDLWSL bmy_17319T0/1-536 RWLRVILDEG HAIRNPNAQQ TKAVLDLEAE RRWVLTGTPI QNSLKDLWSL BACU012795/1-921 RWLRVILDEG HAIRNPNAQQ TKAVLDLEAE RRWVLTGTPI QNSLKDLWSL 651 700 ENSTTRP00000004384/1-1056 LSFLKLKPFL DREWWHRTIQ RPVTMGDEGG LRRLQSLIKN ITLRRTKTSK ENSP00000308944/1-1009 LSFLKLKPFI DREWWHRTIQ RPVTMGDEGG LRRLQSLIKN ITLRRTKTSK ENSBTAP00000034398/1-1009 LSFLKLKPFV DREWWHRTIQ RPVTMGDEAG LRRLQSLIKN ITLRRTKTSK bmy_17319T0/1-536 LSFLKLKPFL DREWWHRTIQ RPVTMGDEGG LRRLQSLIKN ITLRRTKTSK BACU012795/1-921 LSFLKLKPFL DREWWHRTIQ RPVTMGDEGG LRRLQSLIKN ITLRRTKTSK 701 750 ENSTTRP00000004384/1-1056 IRGKPVLELP ERKVFIQHIT LSDEERKIYQ SVKNEGRATI GRYFNEGTVL ENSP00000308944/1-1009 IKGKPVLELP ERKVFIQHIT LSDEERKIYQ SVKNEGRATI GRYFNEGTVL ENSBTAP00000034398/1-1009 IKGKPVLELP ERKVFIQHIT LSDEERKIYQ SVKNEGKATI GRYFNEGTVL bmy_17319T0/1-536 IRGKPVLELP ERKVFIQHIT LSDEERKIYQ SVKNEGRATI G--------- BACU012795/1-921 IRGKPVLELP ERKVFIQHIT LSDEERKIYQ SVKNEGRATI GRYFNEGTVL 751 800 ENSTTRP00000004384/1-1056 AHYADVLGLL LRLRQICCHT HLLTNAVSSS SPSGNDTPEE LRKKLIRKMK ENSP00000308944/1-1009 AHYADVLGLL LRLRQICCHT YLLTNAVSSN GPSGNDTPEE LRKKLIRKMK ENSBTAP00000034398/1-1009 AHYADVLGLL LRLRQICCHT HLLANAVSSS GPSGNDTPEE LRKKLIKKMK bmy_17319T0/1-536 ---------- -RLRQICCHT HLLTNAVSSC GPSGNDTPEE LRKKLIRKMK BACU012795/1-921 AHYADVLGLL LRLRQICCHT QLLTNAVSSC GPSGNDTPEE LRKKLIRKMK 801 850 ENSTTRP00000004384/1-1056 LILSSGSDEE CAICLDSLTV PVITHCAHVF CKPCICQVIQ NEQXXXXXXX ENSP00000308944/1-1009 LILSSGSDEE CAICLDSLTV PVITHCAHVF CKPCICQVIQ NEQPHAKCPL ENSBTAP00000034398/1-1009 LILSSGSDEE CAICLDSLMA PVITHCAHVF CKPCICQVIQ NEQPHAKCPL bmy_17319T0/1-536 LILSSGSDEE CAICLDSLTV PVITHCAHVF CKPCICQVIQ NEQPHAKCPL BACU012795/1-921 LILSSGSDEE CAICLDSLTV PVITHCAHVF CKPCICQVIQ NEQPHAKCPL 851 900 ENSTTRP00000004384/1-1056 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000308944/1-1009 CRNDIHEDNL LECPPEELAR DSEKKSDMEW TSSSKINALM HALTDLRKKN ENSBTAP00000034398/1-1009 CRNDIHGDSL IECPPEELAC NTEKKSNMEW TSSSKINALM HALIDLRKKN bmy_17319T0/1-536 CRNDIHGDNL LECPPEELAC DTEKKPNMEW TSSSKINALM HALIDLRKKN BACU012795/1-921 CRNDIHGDNL LECPPEELAC DAEKKPNMEW TSSSKINALM HALIDLRKKN 901 950 ENSTTRP00000004384/1-1056 XXXXXXXXXX XXXXXXXXXX XXXASGFVFT RLDGSMAQKK RVESIQCFQN ENSP00000308944/1-1009 PNIKSLVVSQ FTTFLSLIEI PLKASGFVFT RLDGSMAQKK RVESIQCFQN ENSBTAP00000034398/1-1009 PNIKSLVVSQ FTTFLSLIET PLRASGFVFT RLDGSMAQKK RVESIQCFQN bmy_17319T0/1-536 PNIKSLVVSQ FTTFLSLIET PLRASGFVFT RLDGSMAQKK RVESIQCFQN BACU012795/1-921 PNIKSLVVSQ FTTFLSLIET PLRASGFVFT RLDGSMAQKK RVESIQCFQN 951 1000 ENSTTRP00000004384/1-1056 TEAGSPTIML LSLKAGGVGL NLSAASRVFL MDPAWNPAAE DQCFDRCHRL ENSP00000308944/1-1009 TEAGSPTIML LSLKAGGVGL NLSAASRVFL MDPAWNPAAE DQCFDRCHRL ENSBTAP00000034398/1-1009 TEAGSPTIML LSLKAGGVGL NLSAASRVFL MDPAWNPAAE DQCFDRCHRL bmy_17319T0/1-536 TEAGSPTIML LSLKAGGVGL NLSAASRVFL MDPAWNPAAE DQCFDRCHRL BACU012795/1-921 TEAGSPTIML LSLKAGGVGL NLSAASRVFL MDPAWNPAAE DQCFDRCHRL 1001 1050 ENSTTRP00000004384/1-1056 GQKQEVIITK FIVKDSVEEN MLKIQNTKRE LAAGAFGTKK ADASEMKQAK ENSP00000308944/1-1009 GQKQEVIITK FIVKDSVEEN MLKIQNKKRE LAAGAFGTKK PNADEMKQAK ENSBTAP00000034398/1-1009 GQKQEVIITK FIVKDSVEEN MLKIQNTKRE LAAGAFGTKK TNASEMKQAK bmy_17319T0/1-536 GQKQEVIITK FIVKDSVEEN MLKIQNTKRE LAAGAFGTKK TDASEMKQAK BACU012795/1-921 GQKQEVIITK FIVKDSVEEN MLKIQNTKRE LAAGAFGTKK TDASEMKQAK 1051 1100 ENSTTRP00000004384/1-1056 INEIRTLIDL ENSP00000308944/1-1009 INEIRTLIDL ENSBTAP00000034398/1-1009 INEIRTLIDL bmy_17319T0/1-536 INEIRTLIDL BACU012795/1-921 INEIRTLIDL