KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:44:24 2014 Check: 00 .. Name: ENSP00000290974/1-887 Len: 1069 Check: 9461 Weight: 1.00 Name: ENSBTAP00000034402/1-844 Len: 1069 Check: 3324 Weight: 1.00 Name: ENSTTRP00000013035/1-858 Len: 1069 Check: 1244 Weight: 1.00 Name: bmy_05461T0/1-753 Len: 1069 Check: 372 Weight: 1.00 Name: BACU012322/1-573 Len: 1069 Check: 6338 Weight: 1.00 // 1 50 ENSP00000290974/1-887 ---------- -----MMNRF RKWLYKPKRS DPQLLARFYY ADEELNQVAA ENSBTAP00000034402/1-844 ---------- ---------- ------PQRS DPQLLAQFYH ADEELSQVAA ENSTTRP00000013035/1-858 ---------- ---------- --------RS DPQLLAQFYH ADEELSQVAA bmy_05461T0/1-753 EPAGLRPRPR WGQGHAPPGR RSRPLSPQRS DPQLLAQFYH ADEELSQVAA BACU012322/1-573 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000290974/1-887 ELDSLDGRKD PQRCTLLVSQ FRSC------ ---------- ---------- ENSBTAP00000034402/1-844 ELDSLDGRKD PQRCTLLVSQ FRSC------ ---------- ---------- ENSTTRP00000013035/1-858 ELDSLDGRKD PQRCTLLVSQ FRSC------ ---------- ---------- bmy_05461T0/1-753 ELDSLDGRKD PQRCTLLVSQ FRSCQEFREM LGAVIVAEAA GSPAVLPAAS BACU012322/1-573 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000290974/1-887 ---------- --QDNVLNII NQIMDECIPQ DRAPRDFCVK FPEEIRHDNL ENSBTAP00000034402/1-844 ---------- --QDNVLNII NQIMDACIPQ DRAPRDFCVK FPEEIRHDNL ENSTTRP00000013035/1-858 ---------- --QDNVLNII NQIMDVCIPQ DRAPRDFCVK FPEEIRHDNL bmy_05461T0/1-753 WSCVLAHFLF LFQDNVLNII NQIMDVCIPQ DRAPRDFCVK FPEEIRHDNL BACU012322/1-573 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000290974/1-887 AGQLWFGAE- ---------- ---------- ---------C LAAGSIIMNR ENSBTAP00000034402/1-844 AGQLWFGAE- ---------- ---------- ---------C LAAGSIIMNR ENSTTRP00000013035/1-858 AGQLWFGAE- ---------- ---------- ---------C LAAGSIIMNR bmy_05461T0/1-753 AGQLWFGAER PLSWVPEART VGAPRTRGWG LPDALCRPQC LAAGSIIMNR BACU012322/1-573 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000290974/1-887 ELESMAMRPL AKELTRSLED VRGALRDQAL RDLNTYTEKM REALRHFDVL ENSBTAP00000034402/1-844 ELESMAMRPL AKELTRSLED VRGALRDQAL RDLNTYTEKM RDALRHFDVL ENSTTRP00000013035/1-858 ELESMAMRPL AKELTRSLED VRGALRDQAL RDLNTYTEKM REALRHFDVL bmy_05461T0/1-753 ELESMAMRPL AKELTRSLED VRGALRDQAL RDLNTYTEKM REALRHFDVL BACU012322/1-573 ---------- ---------- ---------- -MSNTTS--- ---------- 251 300 ENSP00000290974/1-887 FAEFELSYVS AMVPVKSPRE YYVQQEVIVL FCETVERALD FGYLTQDMID ENSBTAP00000034402/1-844 FAEFELSYVS AMVPVKSPRE YYVQQEVIVL FCETVERALD FGYLTQDMID ENSTTRP00000013035/1-858 FAEFELXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXALD FGYLTQDMID bmy_05461T0/1-753 FAEFEL---- ---------- ---------- ------RALD FGYLTQDMID BACU012322/1-573 ---------- ---------- ---------- -------ALD FGYLTQDMID 301 350 ENSP00000290974/1-887 DYEPALMFSI PRLAIVCGLV VYADGPLNLD RKVEDMSELF RPFHTLLRKI ENSBTAP00000034402/1-844 DYEPALMFTI PRLAIVCGLV VYADGPLNLD RKVEDMSELF RPFHTLLRKI ENSTTRP00000013035/1-858 DYEPALMFTI PRLAIVXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_05461T0/1-753 DYEPALMFTI PRLAIVCGLV VYADGPLNLD RKAEDMSELF RPFHTLLRKI BACU012322/1-573 DYEPALMFTI PRLAIVCGLV VYADGPLNLD RKAEDMSELF RPFHTLLRKI 351 400 ENSP00000290974/1-887 RDLLQTLTEE ELHTLERNLC ISQDVEFPIR ADVQGPAALA PALSAPLPPE ENSBTAP00000034402/1-844 RDLLQTLTEE ELHTLERNLC ISQDVELPVR ADAPAPPA-- ------LAPA ENSTTRP00000013035/1-858 XDLLRTLTEE ELHTLERNLC ISQDVEFPIR ADTPVPPALE PALPAPLGPA bmy_05461T0/1-753 RDLLRTLTEE ELHTLERNLC ISQDVELPIR ADTPVPPALE PALPAPLAPA BACU012322/1-573 R--------- ---------- ---------- ---------- ---------- 401 450 ENSP00000290974/1-887 GPLSAKAKDP DAELACSMQY DDQELEQLSR MVHRAGDEMS SLLSPPIACQ ENSBTAP00000034402/1-844 EP-----RRA DAELACSVQN DDQELEQLSR LVHSAGDAMA SLLSPPSAGP ENSTTRP00000013035/1-858 EP-----RHA EAELACSVQD DDQELEQLSR MVHRAGDAMS SLLSPPNACQ bmy_05461T0/1-753 EP-----RHA EAELACSMQN DDQELEQLSR MVHRAGDVMS SLLSPPNACQ BACU012322/1-573 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000290974/1-887 SPAHRPGAEG SPGGEASPGR PRLRSGSDEE E-RVFFMDDV EGTAEALARP ENSBTAP00000034402/1-844 SPAHRPGAAA SPRGRASPGR AQLPPAGDEE EGRVFFMEDV DGAAEA---- ENSTTRP00000013035/1-858 SPAHGPGAER GALGQASPGG PRLPPGSDEE EGRVFFMEDV DGAAEP---- bmy_05461T0/1-753 PPAHRPGAEG GPLGQASPGC PRLPPGSDED EGRVFFMEDV DGAAEP---- BACU012322/1-573 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000290974/1-887 ESPAGPFGWA GSTWADPQEK GQGGPGGAAG ISLPASEKEE DLSNNNLEAE ENSBTAP00000034402/1-844 --PGGGV--- -----DPQET GQG---REAG VGSPASAKRE DSSNNNSVEG ENSTTRP00000013035/1-858 --PGGRCGRA G----GPQER GRGGESRGAG AGAAAAAETA EDLSGSNGAG bmy_05461T0/1-753 --PGGRAGWA GEARADPRER GRGGESREAG GRAAAAAERE DLSSSKSAQG BACU012322/1-573 --LRGVVG-- ---------- ---------- ---------- ---------- 551 600 ENSP00000290974/1-887 GTDGASLAGT SSCSCLDSRL HLDGWEVGAD DAETAEMIAH RTGGMKLSAT ENSBTAP00000034402/1-844 AALRA--AAP TSCSCLDSRP HLDGWEAGAE HAETAELIAH RTGGMKLSAT ENSTTRP00000013035/1-858 RPDAG--VGP GSCSCPDSQP QLDGWEASAE DAQTAELIAH RTGDMKLSTT bmy_05461T0/1-753 DETRA--GGP GACSCPDSQP QLDGWEASAE DAQTAELIAH RTGGMKLSAT BACU012322/1-573 ---------- ----CLDPQQ QLDGWEASAE DAQTAELIAH RTGGMKLSAT 601 650 ENSP00000290974/1-887 VIFNPKSPTS LDSAVATQE- -----AASEP VAEGMDGGPH KLSTGATNCL ENSBTAP00000034402/1-844 VIFNPKSPAS LDSALTHPGV PGNGVPA--- AAEGTAGGPH RLSATATNCL ENSTTRP00000013035/1-858 VIFNPKSPSS LDSALATQK- ---SVSPGEP AAEGPEGGPH KLSTTAANSL bmy_05461T0/1-753 VIFNPKSPTS LDSALANPEV PGNGVCPGEP AAEGTEGGPH KLGAAAANSL BACU012322/1-573 VIFNPKSPTS LDSALANPEV PGNGVSPGQP AAAGTEGGAH KLGAAAANSL 651 700 ENSP00000290974/1-887 LHSCVCCGSC GDSRED-VVE RLREKCSPGG VIGASYAAGL AKASDRAPER ENSBTAP00000034402/1-844 LNSCVCCAGC AGTGEDAAAQ SLRGKCGSGG VIRSAKVG-- ---AKGSAAG ENSTTRP00000013035/1-858 LNSCVCCRG- AGSRED-AAE SLRGKYGSGR VIRSSYVGSA KACAKGSAAG bmy_05461T0/1-753 LNSCVCCRGC AGSRED-AAE SLRGKCGSGG VIRSSYVGSA KACAKGSAAG BACU012322/1-573 LNSCVCCRGC AGSRED-AAE SLRGKCGSGG VIRSSYVGSA KACAKGSAAG 701 750 ENSP00000290974/1-887 QEEA------ ---------P PPSEDASNGR EPKAPTSDKC LPHTSGSQVD ENSBTAP00000034402/1-844 PLEALPA--- -----GGPDP APSEDAPGRP EPEAPASDKC LAHSSGPPGD ENSTTRP00000013035/1-858 LLEV------ ---------P PPSEDAPGGQ EP-APTSDKC LAHTSGPQVD bmy_05461T0/1-753 LLEARPAPAA LPAALGAPDP RPSEDAPGGQ EPKAPTSDKC LAHTSGLQVD BACU012322/1-573 LLEARPAPAA LPAALGAPDP RPSEDAPGGQ EPKAPTSDKC LAHTSGPQVD 751 800 ENSP00000290974/1-887 TASGLQGEAG VAGQQE---- ---PEARELH AGSPSAHEAP QALSGSSS-- ENSBTAP00000034402/1-844 AADRLCGGVD GSHQQEEAPQ EQPPPPAGPS Q----APVFP SPCSGST--- ENSTTRP00000013035/1-858 AADGLPGGGG GASEQK---- ---SEAGEES RRGGAAGEEA QHLPGSXX-- bmy_05461T0/1-753 AADGLPGGGG GASEPKEAEA GQPSEAGEES RRGGAAGEEP QHLSGSR--- BACU012322/1-573 AADGLPGGGG RASEPKEAEA GQPSEAGEES RRGGAAGEEP QHLSGSRTDG 801 850 ENSP00000290974/1-887 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000034402/1-844 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013035/1-858 ---------- ---------- ---------- ---------- ---------- bmy_05461T0/1-753 ---------- ---------- ---------- ---------- ---------- BACU012322/1-573 AQEAALARGE EMSEGTALLG SSQADQECQA QVLGGDHTSS CCSTGPGPWC 851 900 ENSP00000290974/1-887 --------ST AGSCSSDKMG PEAAPAATHA APQATREKIR SRFHGSHDLI ENSBTAP00000034402/1-844 ---------- AGPCSPDTSS PESARV---- ---AVREEMR SRFRGSRDLI ENSTTRP00000013035/1-858 --------XX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX SRFHGSHDLI bmy_05461T0/1-753 ---------- ---------- ---------- ---------- ---------- BACU012322/1-573 GDLHGLSGSV AGSCSSDEMG PDAGPV---- ---AIREKIR SRFHGSHDLI 901 950 ENSP00000290974/1-887 HRLFVCISG- --------VA DQLQTNYASD LRSILKTLFE VMATKPETDD ENSBTAP00000034402/1-844 HRLFVCISG- --------VA DQLQTNYASD LRSILKTLFQ VMATKPETDD ENSTTRP00000013035/1-858 HRLFVCISG- --------VA DQLQTNYASD LRSILKTLFQ VMATKPETDD bmy_05461T0/1-753 ---------- ---------- ---------- ---------- ---------- BACU012322/1-573 HRLFVCISDA TSGPGAGRVA DQLQTNYASD LRSILKTLFQ VMATKPETDD 951 1000 ENSP00000290974/1-887 KEKLRKVTQT LRSAALEDCA LCQETLSSSE LAAKTRDGDF EDPPEWVPDE ENSBTAP00000034402/1-844 KEKLKKVTQT LRSAALEDCA LCQETLSSSE LAAKTRDGDL EDPPEWVPDE ENSTTRP00000013035/1-858 KEKLKKVTQT LRSAALEDCA LCQETLSSSE LAAKTRDGDL EDPPEWVPDE bmy_05461T0/1-753 ---------- ---------- ---------- ---------- ---------- BACU012322/1-573 KEKLKKVTQT LRSAALEDCA LCQETLSSSE LAAKTRDGDL EDPPEWVPDE 1001 1050 ENSP00000290974/1-887 ACGFCTACKA PFTVIRRKHH CRSCGKIFCS RCSSHSAPLP RYGQVKPVRV ENSBTAP00000034402/1-844 ACGFCTACKA PFTVIRRKHH CRSCGKIFCS RCSSHSAPLP RYGQVKPVRV ENSTTRP00000013035/1-858 ACGFCTACKA PFTVIRRKHH CRSCGKIFCS RCSSHSAPLP RYGQVKPVRV bmy_05461T0/1-753 ---------- ---------- ---------- ---------- ---------- BACU012322/1-573 ACGFCTACKA PFTVIRRKHH CRSCGKIFCS RCSSHSAPLP RYGQVKPVRV 1051 1100 ENSP00000290974/1-887 CTHCYMFHVT PFYSDKAGL ENSBTAP00000034402/1-844 CTHCYMFHVT PFYSDKAGI ENSTTRP00000013035/1-858 CTHCYMFHVT PFYSDKAGI bmy_05461T0/1-753 ---------- --------- BACU012322/1-573 CTHCYMFHVT PFYSDKAGI