KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:44:25 2014 Check: 00 .. Name: ENSP00000278505/1-500 Len: 501 Check: 1781 Weight: 1.00 Name: ENSBTAP00000034425/1-500 Len: 501 Check: 350 Weight: 1.00 Name: ENSTTRP00000012328/1-431 Len: 501 Check: 3698 Weight: 1.00 Name: bmy_13171T0/1-501 Len: 501 Check: 9403 Weight: 1.00 Name: BACU014470/1-501 Len: 501 Check: 387 Weight: 1.00 // 1 50 ENSP00000278505/1-500 MGTARWLALG SLFALAGLLE GRLVGEEEAG FGECDKFFYA GTPPAGLAAD ENSBTAP00000034425/1-500 MGPERCLALG GLLALAGLLE GRLVRQEEAG FGECDRFFYA GTPPAGPAAA ENSTTRP00000012328/1-431 MGPARCLALG GLLALAGLLE GRLVSEQ-AG FGECDRFFYA GTPPAGLAAA bmy_13171T0/1-501 MGPARCLALG GLLALAGLLE GRLVREQEAG FGECDRFFYA GTPPAGLAAA BACU014470/1-501 MGPARCLALG GLLALAGLLE GRLVREQEAG FGECDRFFYA GTPPAGLAAA 51 100 ENSP00000278505/1-500 SHVKICQRAE GAERFATLYS TRDRIPVYSA FRAPRPAPGG -AEQRWLVEP ENSBTAP00000034425/1-500 AHVRICQRSE GAERFATLYS TQHRIPVYSA FRAARPAPLG -AEPRGLVEP ENSTTRP00000012328/1-431 AHVKICQRSE GAERFANLYS TWDRIPVYSA FRAARXXXXX -XXXXXXXXX bmy_13171T0/1-501 AHVKICQRSE GAERFATLYS TRDRIPVYSA FRAARPAPLG AAEQRWLVEP BACU014470/1-501 AHVKICQRSE GAERFATLYS TRDRIPVYSA FRAARPAPLG AAEQRWLVEP 101 150 ENSP00000278505/1-500 QIDDPNSNLE EAINEAEAIT SVNSLGSKQA LNTDYLDSDY QRGQLYPFSL ENSBTAP00000034425/1-500 QIDDPNSSLE EVTDEAEAIR SVNKLGSSQA LNEDFLDSDY RTGQLYPFSL ENSTTRP00000012328/1-431 XIDDPNSSLE EVMDEADAIS SVNNLGSKQA LHADYLGSEY QTGQLYPFSL bmy_13171T0/1-501 QIDDANSSLE EVMDEADAIS SVNNLGSKQA LHADYLGSDY QTGQLYPFSL BACU014470/1-501 QIDDPNSSLE EVMDEADAIS SVNNLGSKQA LHADYLGSDY QTGQLYPFSL 151 200 ENSP00000278505/1-500 SSDVQVATFT LTNSAPMTQS FQERWYVNLH SLMDRALTPQ CGSGEDLYIL ENSBTAP00000034425/1-500 SSDPHSATFT LTNAAPMTPS FQERWYMNLN SLMERALTPQ CGSGDELYII ENSTTRP00000012328/1-431 SSDPDTATFT LTNAAPMTPS FQKRWYVNLN SLMDRALSPQ CGDGEELYII bmy_13171T0/1-501 SSDPDTATFT LTNAAPMTPS FQKRWYVNLN SLMDRALTPQ CGBGEELYII BACU014470/1-501 SSDPDTATFT LTNAAPMTPS FLKRWYVNLN SLMDRALTPQ CGDGEELYII 201 250 ENSP00000278505/1-500 TGTVPSDYRV KDKVAVPEFV WLAACCAVPG GGWAMGFVKH TRDSDIIEDV ENSBTAP00000034425/1-500 AGAVPSDLRV RDRVSIPEFV WLAACCAVPA GGWAMGFVKH TRDREVIEDV ENSTTRP00000012328/1-431 AGAVPSDLKV NDKVTIPEFV WLAACCAVPG GGWAMGFVKH TGDREVIEDV bmy_13171T0/1-501 TGAVPSDLKV KDKVTIPEFV WLAACCAVPG GGWAMGFVKH TRDREVIEDV BACU014470/1-501 TGAVPSDLKV KDKVAIPEFV WLAACCAVPG GGWAMGFVKH TQDREVIEDV 251 300 ENSP00000278505/1-500 MVKDLQKLLP FNPQLFQNNC GETEQDTEKM KKILEVVNQI QDEERMVQSQ ENSBTAP00000034425/1-500 MLRDLEKLLP FHLQLFQNNC GESDQDTEKM KKILEVVNQV QDEERRLDSE ENSTTRP00000012328/1-431 MVKELEKLLP FTPQLFQNNC GESEQDTEKM KKILEMVNQV QDEERRVDSE bmy_13171T0/1-501 MVKELEKLLP FKPQLFQNNC GESEQDTEKM KKILEMVNQV QDEERRVDSE BACU014470/1-501 MVKELEKLLP FKPQLFQNNC GESEQDTEKM KKILEMVNQV QDEERRVDSA 301 350 ENSP00000278505/1-500 KSSSPLSSTR SKRSTLLPPE ASEGSSSFLG KLMGFIATPF IKLFQLIYYL ENSBTAP00000034425/1-500 GGSEMLSSAR GTRSALPPPE TSGEGSSLLG GLLGFVATPF IKLCQLIYYL ENSTTRP00000012328/1-431 GDAGTLSSTR STRSTLLPPE ASGERSSLLR KLLGFAATPF IKLCQLIYFL bmy_13171T0/1-501 GDSGTLSSTR GTGSTLLPPE ASGERSSLLG KLLGFTATPF IKLCQLIYFL BACU014470/1-501 GDSGTLSSTR STRSTLLPPE APGEKSSLLG KLLGFTATPF IKLCQLIYFL 351 400 ENSP00000278505/1-500 VVAILKNIVY FLWCVTKQVI NGIESCLYRL GSATISYFMA IGEELVSIPW ENSBTAP00000034425/1-500 AFGILKYTVY FLWYVTKQVI NGLESCLYRL GSATITYFLT IGEELGSIPW ENSTTRP00000012328/1-431 AVRILKYLVY FLWYVTKQVT CGLESCLYRL GSATVSYFLT IGEELASIPW bmy_13171T0/1-501 AVRILKCLVY FLWYVTKQVT HGLESCLYRL GSATISYFLA IGEELASIPW BACU014470/1-501 AVRILKYLVY FLWYVTKQVT HGLESCLYRL GSTTISYFLA IGEELASIPW 401 450 ENSP00000278505/1-500 KVLKVVAKVI RALLRILCCL LKAICRVLSI PVRVLVDVAT FPVYTMGAIP ENSBTAP00000034425/1-500 KVLKVTVRIT RAVLRILCCL LKVVCRVVGV PVRVLVDVAT FPVYTIGAVP ENSTTRP00000012328/1-431 -VLKVMVRIT RAILRILCCL L-VVCRIVGI PVRVL----- ---------- bmy_13171T0/1-501 KVLKVTVRIT RAILRILCCL LKVVCRIVGI PVRVLVDVAT FPVYTIGAVP BACU014470/1-501 KVLKVMVRIT RAILRILCCL LKVVCRIVGI PVRVLVDVAT FPVYTIGAVP 451 500 ENSP00000278505/1-500 IVCKDIALGL GGTVSLLFDT AFGTLGGLFQ VVFSVCKRIG YKVTFDNSGE ENSBTAP00000034425/1-500 IVCREIAMGL GGILSLLFDT AFGTMGGLFQ VIFTVCKRVG YKITFDNPGE ENSTTRP00000012328/1-431 ---------- ---------- ---------- ---------- ---------- bmy_13171T0/1-501 IVCRDIAMGL GGIISLFFDT AFGTMGGLFK VIFTVGKQIG YKITFDNPGE BACU014470/1-501 IVCRDIATGL GGIISLFFDT AFGTMGGLFK VIFNVGKQIG YKITFDNPGE 501 550 ENSP00000278505/1-500 L ENSBTAP00000034425/1-500 L ENSTTRP00000012328/1-431 - bmy_13171T0/1-501 L BACU014470/1-501 L