KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:44:26 2014 Check: 00 .. Name: ENSP00000023064/1-487 Len: 523 Check: 1355 Weight: 1.00 Name: ENSBTAP00000034433/1-487 Len: 523 Check: 2620 Weight: 1.00 Name: ENSTTRP00000011585/1-440 Len: 523 Check: 2910 Weight: 1.00 Name: bmy_22157T0/1-362 Len: 523 Check: 8012 Weight: 1.00 Name: BACU019918/1-441 Len: 523 Check: 3976 Weight: 1.00 // 1 50 ENSP00000023064/1-487 MGDTGLRKRR EDEKSIQSQE PKTTSLQKEL GLISGISIIV GTIIGSGIFV ENSBTAP00000034433/1-487 MEETSLRKRR GDEKSIQSSE PKTTSLQKEL GLFSGTCIIV GTIIGSGIFI ENSTTRP00000011585/1-440 MEETSLRKRR EDEKSIQSIE HKTTNLQKEL GLFSGICIIV GTIIGSGIFI bmy_22157T0/1-362 MEETSLRKRR EDEKSIQSIE HKTTNLQKEL GLFSGICIIV GTIIGSGIFI BACU019918/1-441 MEETSLRKRR EDEKSIQSIE PKTTNLQKEL GLFSGICIIV GTIIGSGIFI 51 100 ENSP00000023064/1-487 SPKSVLSNTE AVGPCLIIWA ACGVLATL-- ---------- ---------- ENSBTAP00000034433/1-487 SPKSVLRNME AVGPCLIIWT MCGVLATL-- ---------- ---------- ENSTTRP00000011585/1-440 SPKSVLSNME AVGPCLIVWA ACGILATL-- ---------- ---------- bmy_22157T0/1-362 SPKSVLSNME AVGPCLIMWA ACGILATLGT VMGSGSMSPT GERGSLNQGN BACU019918/1-441 SPKSVLSNME AVGPCLIIWA ACGILATL-- ---------- ---------- 101 150 ENSP00000023064/1-487 ---------- ----GALCFA ELGTMITKSG GEYPYLMEAY GPIPAYLFSW ENSBTAP00000034433/1-487 ---------- ----GALCFA ELGTMITKSG GEYPYLMEAF GPIPAYLFSW ENSTTRP00000011585/1-440 ---------- ----GALCFA ELGTMITKSG GEYPYLMEAF GPIPAYLFSW bmy_22157T0/1-362 ASRGARGPLP LCIPGALCFA ELGTMITKSG GEYPYLMEAF GPIPAYLFSW BACU019918/1-441 ---------- ----GALCFA ELGTMITKSG GEYPYLMEAF GPIPAFLFSW 151 200 ENSP00000023064/1-487 ASLIVIKPTS FAIICLSFSE YVCAPFYVGC KPPQIVVKCL AAAAILFIST ENSBTAP00000034433/1-487 SSLFVIKPSS FAIICLSFSE YVCAPFYSGC SPPQVVVKSL AAAAILLIST ENSTTRP00000011585/1-440 TSLFVIKPSS FAIICLSFSE YVSA-FYSGC NPPQVVIKLL AAAAILLITT bmy_22157T0/1-362 TSLFVIKPSS FAIICLSFSE YVSAPFYSGC NPPQVVIKLL AAAAILLITT BACU019918/1-441 TSLFVIKPSS FAIICLSFSE YVSAPFYSGC NPPQVVIKLL AAAAILLITT 201 250 ENSP00000023064/1-487 VNSLSVRLGS YVQNIFTAAK LVIVAIIIIS GLVLLAQGNT KNFDNSFEGA ENSBTAP00000034433/1-487 VNALSVRLGS YVQNMFTAAK MVIVVIIIVS GLVLLAQGNT RNFENSFEGA ENSTTRP00000011585/1-440 VNALSVRLGS YVQNVFTATK MVIVVVIIIS GIVLLAQGNT RNFENSFEGT bmy_22157T0/1-362 VNALSVRLGS YVQNVFTAAK MVIVVIIIIS GLVLLAQGNT RNFENSFEGT BACU019918/1-441 VNALSVRLGS YVQNVFTAAK MVIVVVIIIS GLVLLAQGNT RNFENSFEGT 251 300 ENSP00000023064/1-487 QLSVGAISLA FYNGLWAYDG WNQLNYITEE LRNPYRNLPL AIIIGIPLVT ENSBTAP00000034433/1-487 SLSVGSISLA LYNGLWAYDG WNQLNYITEE LRNPFRNLPL AIIIGIPLVT ENSTTRP00000011585/1-440 KLSLGAIGLA FYNGLWAYDG WNQLNYITEE LRNPFRNLPL AIIIGIPLVT bmy_22157T0/1-362 KLSLGAIGLA FYNGLWAYDG WNQLNYITEE LRNPFRNLPL AIIIGIPLVT BACU019918/1-441 KLSLGAIGLA FYNGLWAYDG WNQLNYITEE LRNPFRNLPL AIIIGIPLVT 301 350 ENSP00000023064/1-487 ACYILMNVSY FTVMTATELL QSQAVAVTFG DRVLYPASWI VPLFVAFSTI ENSBTAP00000034433/1-487 GCYILMNVSY FTVMTATELL QSQAVAVTFG DRVLYPASWI VPLFVAFSTI ENSTTRP00000011585/1-440 GCYILMNVSY FTVMTATELL QSQAVAVTFG DRVLYPASWV VPLFVAFSTL bmy_22157T0/1-362 GCYILMNVSY FTVMTATELL QSQAVAVTFG DRVLYPASWV VPLFVAFSTI BACU019918/1-441 GCYILMNVSY FTVMTATELL QSQAVAVTFG DRVLYPASWV VPLFVAFSTI 351 400 ENSP00000023064/1-487 GAANGTCFTA GRLIYVAGRE GHMLKVLSYI SVRRLTPAPA IIFYGIIATI ENSBTAP00000034433/1-487 GAANGSCFTA GRLVFVAGRE GHMLKVLSYI SVRRLTPAPA IMFHGMIAII ENSTTRP00000011585/1-440 GAANGTCFTA GRLVYVAGRE GHMLKVLSYV SVKRLTPAPA IIFYGIIAII bmy_22157T0/1-362 GAANGTCFTA GR-------- ---------- ---------- ---------- BACU019918/1-441 GAANGTCFTA GRLVYVAGRE GHMLKVLSYV SVKRLTPAPA IIFYGIIATI 401 450 ENSP00000023064/1-487 YIIPGDINSL VNYFSFAAWL FYGLTILGLI VMRFTRKELE RPIKVPVVIP ENSBTAP00000034433/1-487 YIIPGDINSL VNYFSFAAWL FYGLTITGLI VMRFTRKELK RPIKVPIFIP ENSTTRP00000011585/1-440 YIIPGDINSL VNYFSFAAWL FYGLTIFGLV VMRFTRKELK RPIKVPIFIP bmy_22157T0/1-362 ---------- ---------- ---------- ---------- ---------- BACU019918/1-441 YIIPGDINSL VNYFSFAAWL FYGLTIFGLV VMRFTRKELK RPIKVPIFIP 451 500 ENSP00000023064/1-487 VLMTLISVFL VLAPIISKPT WEYLYCVLFI LSGLLFYFLF VHYKFGWAQK ENSBTAP00000034433/1-487 ILVTLLSVFL VLAPIISAPA WEYLYCVLFM LSGLVFYFLF VYYKFAWAQK ENSTTRP00000011585/1-440 ILVTLLSVIL VLAPIISQPA WEYLYCV--- ---------- ---------- bmy_22157T0/1-362 ---------- ---------- ---------- ---------- ---------- BACU019918/1-441 ILVTLLSVFL VLAPIISQPA WEYLYCV--- ---------- ---------- 501 550 ENSP00000023064/1-487 ISKPITMHLQ MLMEVVPPEE DPE ENSBTAP00000034433/1-487 ISKPLTMHLQ MLMEVVPPEE APE ENSTTRP00000011585/1-440 ---------- ---------- --- bmy_22157T0/1-362 ---------- ---------- --- BACU019918/1-441 ---------- ---------- ---