KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:44:27 2014 Check: 00 .. Name: ENSTTRP00000005685/1-1040 Len: 1065 Check: 442 Weight: 1.00 Name: ENSP00000328277/1-1039 Len: 1065 Check: 2089 Weight: 1.00 Name: ENSBTAP00000034440/1-1036 Len: 1065 Check: 4446 Weight: 1.00 Name: bmy_04968T0/1-942 Len: 1065 Check: 7913 Weight: 1.00 Name: BACU003640/1-800 Len: 1065 Check: 6033 Weight: 1.00 // 1 50 ENSTTRP00000005685/1-1040 MPWFPVKKIR KQIKLLLLLL LLTCAAWLTY VHLSLVRQGR ALRQRLGYG- ENSP00000328277/1-1039 MPRLPVKKIR KQMKLLLLLL LLSCAAWLTY VHLGLVRQGR ALRQRLGYG- ENSBTAP00000034440/1-1036 MPWFPVKKIR KQIKLLLLLV LLTCAAWLTY VHLSLVRQGR ALRQRLGYG- bmy_04968T0/1-942 TPHVPP---- ---------- ---------- ---------- ---------- BACU003640/1-800 ---------- -------MTS AVTCATLLGS VPEPRRTPGS GLERVVSDGV 51 100 ENSTTRP00000005685/1-1040 RDGEKLSGVT DGRGIRAALS TQRAEDSSES REEERVPEGR --DPDALFPW ENSP00000328277/1-1039 RDGEKLTSET DGRGVHAAPS TQRAEDSSES REEEQAPEGR --DLDMLFPG ENSBTAP00000034440/1-1036 RDGEKLSGVT DGRGVHAALA TQRAEDSSES REEEPVSEGR --DPGVLFPG bmy_04968T0/1-942 TDGEKLSGVT DGRGIRAALS TQRAEDSSES REEERV---- ---------- BACU003640/1-800 NDGEKLSGVT DGRGVRAALS TQRAEDSSES REEERVPEGR DPDPDALFPG 101 150 ENSTTRP00000005685/1-1040 GAGRPLSLNL TRQAPSWREE YKGQVNLHVF EDWCGGAVGH LRRNLHFPLF ENSP00000328277/1-1039 GAGR-LPLNF THQTPPWREE YKGQVNLHVF EDWCGGAVGH LRRNLHFPLF ENSBTAP00000034440/1-1036 GAGRPLVLNL TRQVPVWREE YKGQVNLHVF EDWCGGAVGQ LRRNLHFPLF bmy_04968T0/1-942 ---------- ---------- ---------- ---------- ---------- BACU003640/1-800 GAGRPLSLNL TRQAPWWQEE ---------- ---------- ---------- 151 200 ENSTTRP00000005685/1-1040 PHTRTTVKKL AVSPKWKNYG LRIFGFIHPA RDGDVQFSVA SDDNSEFWLS ENSP00000328277/1-1039 PHTRTTVKKL AVSPKWKNYG LRIFGFIHPA RDGDVQFSVA SDDNSEFWLS ENSBTAP00000034440/1-1036 PHTETNVHVL SKYPKWWNYG RTCFNFFLSY GLGDVQFSVA SDDNSEFWLS bmy_04968T0/1-942 --TRTTVKKL AVSPKWKNYG LRIFGFIHPA RDGDVQFSVA SDDNSEFWLS BACU003640/1-800 --TRTTVRKL AVSPKWKNYG LRIFGFIHPA RDG------- ---------- 201 250 ENSTTRP00000005685/1-1040 PTESPAGAQL VAFVGKTGSE WTAPGEFTKF SSQVSKPRRL MASRRYYFEL ENSP00000328277/1-1039 LDESPAAAQL VAFVGKTGSE WTAPGEFTKF SSQVSKPRRL MASRRYYFEL ENSBTAP00000034440/1-1036 PNESPAGAQL VAFVGKTGSE WTAPGEFTKF SSQVSKPRRL MASRRYYFEL bmy_04968T0/1-942 PTESPAGAQL VAFVGKTGSE WTAPGEFTKF SSQVSKPRRL MASRRYYFEL BACU003640/1-800 -----AGT-- -----GTGSE WTAPGEFTKF SSQVSKPRRL MASRRYYFEL 251 300 ENSTTRP00000005685/1-1040 LHKQDDRGSD HVEVGXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000328277/1-1039 LHKQDDRGSD HVEVGWRAFL PGLKFEVISS AHISLYTDES ALKMDHVAHV ENSBTAP00000034440/1-1036 LHKQDDRGSD HVEVGWRAFL PGLKFEVIGS AHISLYTDES ALKMDHVAHV bmy_04968T0/1-942 LHKQDDRGSD HVEVGWRAFL PGLKFEVIGS AHISLYTDES ALKMDHVAHV BACU003640/1-800 LHKQDDRGSD HVEVGWRAFL PGLKFEVIGS AHISLYTDES ALKMDHVAHV 301 350 ENSTTRP00000005685/1-1040 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000328277/1-1039 PQSPASHVGG RPPQEETSAD MLRPDPRDTF FLTPRMESSS LENVLEPCAY ENSBTAP00000034440/1-1036 PQSPASHVAG QPLQEEPRAD MLRPDPRDAF FLTPRVEPSD LESVLEPCAY bmy_04968T0/1-942 PQSPASHVGG RLLQEEPRAD MLRPDPRDTF FLTPRVEPWS LENVLEPCAY BACU003640/1-800 PQSPASHVGG RLLQEEPRAD MLRPDPRDTF FLTPRVEPWS LENVLEPCAY 351 400 ENSTTRP00000005685/1-1040 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000328277/1-1039 APTYVVKDFP IARYQGLQFV YLSFVYPNDY TRLTHMETDN KCFYRESPLY ENSBTAP00000034440/1-1036 APTYVVKDFP IARYQGLQFV YLSFVYPNDH TRLTHMETDN KCFYRESPLY bmy_04968T0/1-942 APTYVVKDFP IARYQGLQFV YLSFVYPNDH TRLTHMETDN KCFYRESPLY BACU003640/1-800 APTYVVKDFP IARYQGLQFV YLSFVYPNDH TRLTHMETDN KCFYRESPLY 401 450 ENSTTRP00000005685/1-1040 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000328277/1-1039 LERFGFYKYM KMDKEEGDED EEDEVQRRAF LFLNPDDFLD DEDEGELLD- ENSBTAP00000034440/1-1036 LERFGFYKYM KMDREEGGED RE-EVQRRAF LFLNPDDFLD DEDDGELLDA bmy_04968T0/1-942 LERFGFYKYM KMDREEGEED EEEEVQRRAF LFLNPDDFLD DEDDGELLD- BACU003640/1-800 LERFGFYKYM KMDREEGEED EEEEVQRRAF LFLNPD---- ---------- 451 500 ENSTTRP00000005685/1-1040 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000328277/1-1039 SLEPTEAAPP RSGPQSPAPA APAQPGATLA PPTPPRPRDG GTPRHSRALS ENSBTAP00000034440/1-1036 GLGPTEAPRR QGSRQLPAPA APSEAPATPA AP-------- -TPRRSRALS bmy_04968T0/1-942 GLEPTEAPRT QGGRRLPAPA APTEAPATPA LPTPPAPLGR PTPRRSRALS BACU003640/1-800 ---------- ---------- ---------- ---------- ---------- 501 550 ENSTTRP00000005685/1-1040 X------XXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000328277/1-1039 WAARAARPLP LFLGRAPPPR PAV-EQPPPK VYVTRVRPGQ RASPRAPAPR ENSBTAP00000034440/1-1036 W---AARQLP LFLGRAPPPR PAA---RPSK VYVTRVRPGL RAPPGAP-PL bmy_04968T0/1-942 W---AARPLP LFWGRVPPPR PAAAAERPPK VYVTRVRPGL RALPRAPAPL BACU003640/1-800 ---------- ---------- ---------- ---------- ---------- 551 600 ENSTTRP00000005685/1-1040 XXXXXXRTTF PGVFLRPRHL PRVQLRKSQS PPRTRRRRTD RPQDAKMRPT ENSP00000328277/1-1039 A----PWPPF PGVFLHPRPL PRVQLRAPPR PPRPHGRRTG GPQATQPRPP ENSBTAP00000034440/1-1036 GARGPPRPPL PGVFLRPRPL PRVPLRAPPR PPRARGHRTS SPPATELRAP bmy_04968T0/1-942 SPRGPPRPPF PGVFLRPRPQ PRVQLRARPR PPRARGRRTG GPQAAKLRPP BACU003640/1-800 ---------- ---------- ---------- ---------- ---------- 601 650 ENSTTRP00000005685/1-1040 TQTPTTQESQ EDQAREPRLT TPT-----TD NYSSEAQPVT SYLRLSQM-- ENSP00000328277/1-1039 ARAQATQGGR EGQARTLGPA APT----VDS NLSSEARPVT SFLSLSQVSG ENSBTAP00000034440/1-1036 APAPATREGR EGRARAPGLA APT----ADS NSSSEAQPVT SFLSLSQVSR bmy_04968T0/1-942 APAPATHGSR EGQAREPGLT APTADADADS NSSSEAQPVT SFLSLSQVSR BACU003640/1-800 ---------- EGQAREPGLT APT----ADS NSSSEAQPVT SFLSLSQVSR 651 700 ENSTTRP00000005685/1-1040 ---PGENEEE EEGDDEEGAQ GEEAA-EDRE EKAGAVRGRW QEDAVNWQRT ENSP00000328277/1-1039 PQLPGEGEEE EEGED-DGAP GDEAASEDSE EAAGPALGRW REDAIDWQRT ENSBTAP00000034440/1-1036 PQLPGEDEEE EGDDDEEGAP GDENASEDSE EAAGLVRGRW REDAIDWQRT bmy_04968T0/1-942 PQLPRENEEE EEGDDEEGAQ GEEAASEDSE EKAGPVRGRW REDAINWQRT BACU003640/1-800 LQLPGENEEE EEGDDEEGAQ GEEAASEDSE EKAGPARGRW REDAINWQRT 701 750 ENSTTRP00000005685/1-1040 FSVGSVDFEV LRSDWNDLRC NVSGNLQLQE AEAVDVVAQY MERLNARHGG ENSP00000328277/1-1039 FSVGAVDFEL LRSDWNDLRC NVSGNLQLPE AEAVDVTAQY MERLNARHGG ENSBTAP00000034440/1-1036 FSVGNVDFEL LRSDWNDLRC NVSGNLQLPE AEAVDVVAQY MERLNMRHSG bmy_04968T0/1-942 FSVGNVDFEM LRSDWNDLRC NVSGNLQLPE AEAVDVVAQY MERLNARHGG BACU003640/1-800 FSVGNVDFEM LRSDWNDLRC NVSGNLQLPE AEAVDVVAQY MERLNARHGG 751 800 ENSTTRP00000005685/1-1040 RYALLRIVNV EKRRDSARGS RFLLELELQE RGGRRLRLSE YVFLRLPRVR ENSP00000328277/1-1039 RFALLRIVNV EKRRDSARGS RFLLELELQE RGGGRLRLSE YVFLRLPGAR ENSBTAP00000034440/1-1036 RYALLRIVNV EKRRDSARGS RFLLELELQE RGGRRLRLSE YVFLRLPGAR bmy_04968T0/1-942 RYTLLRIVNV EKRRDSARGS RFLLELELQE RGGRRLRLSE YVFLRLPGAR BACU003640/1-800 RYALLRIVNV EKRRDSARGS RFLLELELQE RGGRRLRLSE YVFLRLPGAR 801 850 ENSTTRP00000005685/1-1040 AGDTDGDGES PEPAPAVSPA ASVHPDGRPE LCRPLRLAWR QDVMVHFIVP ENSP00000328277/1-1039 VGDA--DGES PEPA----PA ASVRPDGRPE LCRPLRLAWR QDVMVHFIVP ENSBTAP00000034440/1-1036 AGDTEEDRES PEPA-----A ASARPDGRPE LCRPLRLAWR QDVMVHFVVP bmy_04968T0/1-942 AGDTDGDGDS PEPA----PA ASVHPDGRPE LCRPLRLAWR QDVMVHFIVP BACU003640/1-800 AGDTDGDGDS PEPA----PA ASARPDGRPE LCRPLRLAWR QDVMVHFIVP 851 900 ENSTTRP00000005685/1-1040 VKNQARWVVQ FLADMAALHI RTGDSRFSVI LVDFESDDMD VERALRAAPL ENSP00000328277/1-1039 VKNQARWVAQ FLADMAALHA RTGDSRFSVV LVDFESEDMD VERALRAARL ENSBTAP00000034440/1-1036 VKNQARWVMQ FLADMAALHA RTGDSRFSVV LVDFESEDMD VEQALRAARL bmy_04968T0/1-942 VKNQARWVVQ FLADMAALHA RTGDSGFSVI LVDFESEDMD VERALRAAPL BACU003640/1-800 VKNQARWVVQ FLADMAALHA RTGDSRFSVI LVDFESEDMD VERALRAAPL 901 950 ENSTTRP00000005685/1-1040 PRYQYLRRSG NFERSAGLQA GVAAVEDASS IVFLCDLHIH FPPSILDGIR ENSP00000328277/1-1039 PRYQYLRRTG NFERSAGLQA GVDAVEDASS IVFLCDLHIH FPPNILDGIR ENSBTAP00000034440/1-1036 PRYQYLRRAG NFERSAGLQA GVDAVEDASS IVFLCDLHIH FPPSILDGIR bmy_04968T0/1-942 PRYQYLRRTG NFERSAGLQA GVAAVEDASS IVFLCDLHIH FPPSILDGIR BACU003640/1-800 PRYRYLRRTG NFERSAGLQA GVAAVEDASS IVFLCDLHIH FPPGILDGIR 951 1000 ENSTTRP00000005685/1-1040 KHCVEGKLAF APVVMRLGCG SSPGDPHGYW EVNGFGLFGI YKSDFDRVGG ENSP00000328277/1-1039 KHCVEGRLAF APVVMRLSCG SSPRDPHGYW EVNGFGLFGI YKSDFDRVGG ENSBTAP00000034440/1-1036 KHCVEGKLAF APVVMRLSCG SSPGDPHGYW EVNGFGLFGI YKSDFDRIGG bmy_04968T0/1-942 KHCVEGRLAF APVVMRLGCG SSPGDPHGYW EVNGFGLFGI YKSDFDRIGG BACU003640/1-800 KHCVEGRLAF APVVMRLGCG SSPGDPHGYW EVNGFGLFGI YKSDFDRIGG 1001 1050 ENSTTRP00000005685/1-1040 MNTEEFRDQW GGEDWELLDR VLQAGLEVER LRVRNFYHHF HSKRGMWGVH ENSP00000328277/1-1039 MNTEEFRDQW GGEDWELLDR VLQAGLEVER LRLRNFYHHY HSKRGMWSVR ENSBTAP00000034440/1-1036 MNTEEFRDQW GGEDWELLDR VLQAGLEVER LRIRNFYHHF HSKRGMWGAR bmy_04968T0/1-942 MNTEEFRDQW GGEDWELLDR VLQAGLEVER LRVRNFYHHF HSKRGMWGVR BACU003640/1-800 MNTEEFRDQW GGEDWELLDR VLQAGLEVER LRVRNFYHHF HSKRGMWGVR 1051 1100 ENSTTRP00000005685/1-1040 SRKAARKEAP ----- ENSP00000328277/1-1039 SRKGSRTGAS ----- ENSBTAP00000034440/1-1036 SRKAARKEAP QKEAP bmy_04968T0/1-942 SRKAARKEAP ----- BACU003640/1-800 SRKAARKEAP -----