KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:44:28 2014 Check: 00 .. Name: ENSTTRP00000008800/1-990 Len: 1121 Check: 7687 Weight: 1.00 Name: ENSBTAP00000034443/1-1092 Len: 1121 Check: 963 Weight: 1.00 Name: ENSP00000382379/1-1053 Len: 1121 Check: 3186 Weight: 1.00 Name: bmy_19903T0/1-1027 Len: 1121 Check: 5262 Weight: 1.00 Name: BACU001555/1-1083 Len: 1121 Check: 9680 Weight: 1.00 // 1 50 ENSTTRP00000008800/1-990 MSRVCIVVLE EVEDESPAFI SKLPQENKSL HSPPSGSVLV RYPSLVQAIF ENSBTAP00000034443/1-1092 MSRVCIVVLE EVEDESPEFI CKLPQENKSL HSAPSGNVLV RYPSLVQAIF ENSP00000382379/1-1053 ---------- ------MAFL KLRDQ----- ---------- --PSLVQAIF bmy_19903T0/1-1027 ---------- ---------- ---------- ---------- ---------- BACU001555/1-1083 MSRVCIVVLE EVEDESPAFI SKLPQENKSL HSPPLGSVL- --PSLVQAIF 51 100 ENSTTRP00000008800/1-990 NGDPDEVRAL IFKKEDVNFQ DNEKRTPLHA AAYLGDAEII ELLILSGARV ENSBTAP00000034443/1-1092 NGDPDEVRAL IFKKEDVNFQ DNEKRTPLHA AAYLGDAEII ELLILSGARV ENSP00000382379/1-1053 NGDPDEVRAL IFKKEDVNFQ DNEKRTPLHA AAYLGDAEII ELLILSGARV bmy_19903T0/1-1027 ---------- ---------- ---------- --------IY FFLLVAGARV BACU001555/1-1083 NGDPDEVRAL IFKKEDVNFQ DNEKRTPLHA AAYLGDAEII ELLILSGARV 101 150 ENSTTRP00000008800/1-990 NAKDNKWLTP LHRAVASCSE EAVQVLLKHS ADVNARDKNW QTPLHIAAAN ENSBTAP00000034443/1-1092 NAKDSKWLTP LHRAVASCSE EAVQVLLKHS ADVNARDKNW QTPLHTAAAN ENSP00000382379/1-1053 NAKDSKWLTP LHRAVASCSE EAVQVLLKHS ADVNARDKNW QTPLHIAAAN bmy_19903T0/1-1027 NAKDNKWLTP LHRAVASCSE EAVQVLLKHS ADVNARDKNW QTPLHIAAAN BACU001555/1-1083 NAKDNKWLTP LHRAVASCSE EAVQVLLKHS ADVNARDKNW QTPLHIAAAN 151 200 ENSTTRP00000008800/1-990 KAVKCAEALV PLLSNVNVSD RAGRTALHHA AFSGHGEMVK LLLSRGANIN ENSBTAP00000034443/1-1092 KAVKCAEALV PLLSNVNVSD RAGRTALHHA ALSGHGEMVK LLLSRGANIN ENSP00000382379/1-1053 KAVKCAEALV PLLSNVNVSD RAGRTALHHA AFSGHGEMVK LLLSRGANIN bmy_19903T0/1-1027 KAVKCAEALV PLLSNVNVSD RAGRTALHHA AFSGHGEMVK LLLSRGANIN BACU001555/1-1083 KAVKCAEALV PLLSNVNVSD RAGRTALHHA AFSGHGEMVK LLLSRGANIN 201 250 ENSTTRP00000008800/1-990 AFDKKDRRAI HWAAYMGHIE VVKLLVAHGA EVTCKDKKSY TPLHAAASSG ENSBTAP00000034443/1-1092 AFDKKDRRAI HWAAYMGHIE VVKLLVAHGA EVTCKDKKSY TPLHAAASSG ENSP00000382379/1-1053 AFDKKDRRAI HWAAYMGHIE VVKLLVSHGA EVTCKDKKSY TPLHAAASSG bmy_19903T0/1-1027 AFDKKDRRAI HWAAYMGHTE VVKLLVAHGA EVTCKDKKSY TPLHAAASSG BACU001555/1-1083 AFDKKDRRAI HWAAYMGHIE VVKLLVAHGA EVTCKDKKSY TPLHAAASSG 251 300 ENSTTRP00000008800/1-990 MISVVKYLLD LGVDMNEPNA YGNTPLHVAC YNGQDVVVNE LIDCGANVNQ ENSBTAP00000034443/1-1092 MISVVKYLLD LGVDMNEPNA YGNTPLHVAC YNGQDVVVNE LIDSGANVNQ ENSP00000382379/1-1053 MISVVKYLLD LGVDMNEPNA YGNTPLHVAC YNGQDVVVNE LIDCGAIVNQ bmy_19903T0/1-1027 MISVVKYLLD LGVDMNEPNA YGNTPLHVAC YNGQDVVVNE LIDCGANVNQ BACU001555/1-1083 MISVVKYLLD LGVDMNEPNA YGNTPLHVAC YNGQDVVVNE LIDCGANVNQ 301 350 ENSTTRP00000008800/1-990 KNEKGFTPLH FAAASTHGAL CLELLVGNGA DVNMKSKDGK TPLHMTALHG ENSBTAP00000034443/1-1092 KNEKGFTPLH FAAASTHGAL CLELLVGNGA DVNMKSKDGK TPLHMTALHG ENSP00000382379/1-1053 KNEKGFTPLH FAAASTHGAL CLELLVGNGA DVNMKSKDGK TPLHMTALHG bmy_19903T0/1-1027 KNEKGFTPLH FAAASTHGAL CLELLVGNGA DVNMKSKDGK TPLHMTALHG BACU001555/1-1083 KNEKGFTPLH FAAASTHGAL CLELLVGNGA DVNMKSKDGK TPLHMTALHG 351 400 ENSTTRP00000008800/1-990 RFSRSQTIIQ SGAVIDCEDK NGNTPLHIAA RYGHELLINT LITSGADTAK ENSBTAP00000034443/1-1092 RFSRSQTIIQ SGAVIDCEDK NGNTPLHIAA RYGHELLINT LITSGADTAK ENSP00000382379/1-1053 RFSRSQTIIQ SGAVIDCEDK NGNTPLHIAA RYGHELLINT LITSGADTAK bmy_19903T0/1-1027 RFSRSQTIIQ SGAVIDCEDK NGNTPLHIAA RYGHELLINT LITSGADTAK BACU001555/1-1083 RFSRSQTIIQ SGAVIDCEDK NGNTPLHIAA RYGHELLINT LITSGADTAK 401 450 ENSTTRP00000008800/1-990 RGIHGMFPLH LAALSGFSDC CRKLLSSGFD IDTPDDFGRT CLHAAAAGGN ENSBTAP00000034443/1-1092 RGIHGMFPLH LAALSGFSDC CRKLLSSGFD IDTPDDFGRT CLHAAAAGGN ENSP00000382379/1-1053 RGIHGMFPLH LAALSGFSDC CRKLLSSGFD IDTPDDFGRT CLHAAAAGGN bmy_19903T0/1-1027 RGIHGMFPLH LAALSGFSDC CRKLLSSGFD IDTPDDFGRT CLHAAAAGGN BACU001555/1-1083 RGIHGMFPLH LAALSGFSDC CRKLLSSGFD IDTPDDFGRT CLHAAAAGGN 451 500 ENSTTRP00000008800/1-990 LECLNLLLNT GADFNKKDKF G------RSP LHYAAANCNY QCLFALVGSG ENSBTAP00000034443/1-1092 LECLNLLLNT GADFNKKDKF GRLIWAKRSP LHYAAANCNY QCLFALVGSG ENSP00000382379/1-1053 LECLNLLLNT GADFNKKDKF G------RSP LHYAAANCNY QCLFALVGSG bmy_19903T0/1-1027 LECLNLLLNT GADFNKKDKF G------RSP LHYAAANCNY QCLFALVGSG BACU001555/1-1083 LECLNLLLNT GADFNKKDKF G------RSP LHYAAANCNY QCLFALVGSG 501 550 ENSTTRP00000008800/1-990 ASVNDLDERG CTPLHYAATS DTDGKCLEYL LRNDANPGIR DKQGYNAVHY ENSBTAP00000034443/1-1092 ASVNDLDERG CTPLHYAATS DTDGKCLEYL LRNDANPGIR DKQGYNAVHY ENSP00000382379/1-1053 ASVNDLDERG CTPLHYAATS DTDGKCLEYL LRNDANPGIR DKQGYNAVHY bmy_19903T0/1-1027 ASVNDLDERG CTPLHYAATS DTDGKCLEYL LRNDANPGIR DKQGYNAVHY BACU001555/1-1083 ASVNDLDERG CTPLHYAATS DTDGKCLEYL LRNDANPGIR DKQGYNAVHY 551 600 ENSTTRP00000008800/1-990 SAAYGHRLCL QLIASETPLD VLMETSGTDM LSDSDNRATI SPLHLAAYHG ENSBTAP00000034443/1-1092 SAAYGHRLCL QLIASETPLD VLMETSGTDM LNDSDNRATI SPLHLAAYHG ENSP00000382379/1-1053 SAAYGHRLCL QLIASETPLD VLMETSGTDM LSDSDNRATI SPLHLAAYHG bmy_19903T0/1-1027 SAAYGHRLCL QLIASETPLD VLMETSGTDM LSDSDNRATI SPLHLAAYHG BACU001555/1-1083 SAAYGHRLCL QLIASETPLD VLMETSGTDM LSDSDNRATI SPLHLAAYHG 601 650 ENSTTRP00000008800/1-990 HHQALEVLVQ SLLDLDVRNS SGRTPLDLAA FKGHVECVDV LINQGASILV ENSBTAP00000034443/1-1092 HHQALEVLVQ SLLDLDVRNS SGRTPLDLAA FKGHVECVDV LINQGASILV ENSP00000382379/1-1053 HHQALEVLVQ SLLDLDVRNS SGRTPLDLAA FKGHVECVDV LINQGASILV bmy_19903T0/1-1027 HHQALEVLVQ SLLDLDVRNS SGRTPLDLAA FKGHVECVDV LINQGASILV BACU001555/1-1083 HHQALEVLVQ SLLDLDVRNS SGRTPLDLAA FKGHVECVDV LINQGASILV 651 700 ENSTTRP00000008800/1-990 KDYILKRTPI HAAATNGHSE CLRLLIGNAE PQNAVDIQDG NGQ------- ENSBTAP00000034443/1-1092 KDYILKRTPI HAAATNGHSE CLRLLIGNAE PQNAVDIQDG NGQ------- ENSP00000382379/1-1053 KDYILKRTPI HAAATNGHSE CLRLLIGNAE PQNAVDIQDG NGQ------- bmy_19903T0/1-1027 KDYILKRTPI HAAATNGHSE CLRLLIGNAE PQNAVDIQDG NGQKTRLEGR BACU001555/1-1083 KDYILKRTPI HAAATNGHSE CLRLLIGNAE PQNAVDIQDG NGQ------- 701 750 ENSTTRP00000008800/1-990 ---------- ---------- --TPLMLSVL NGHTDCVYSL L-KGANVDAK ENSBTAP00000034443/1-1092 ---------- ---------- --TPLMLSVL NGHTDCVYSL LNKGANVDAK ENSP00000382379/1-1053 ---------- ---------- --TPLMLSVL NGHTDCVYSL LNKGANVDAK bmy_19903T0/1-1027 PAQCTFMDEV SVVTELLLLL PRTPLMLSVL NGHTDCVYSL LNKGANVDAK BACU001555/1-1083 ---------- ---------- --TPLMLSVL NGHTDCVYSL LHKGANVDYK 751 800 ENSTTRP00000008800/1-990 DKWGRXXXXX XAVTGHEECV DALLQHGAKC LLRDSRGRTP IHLSAACGHI ENSBTAP00000034443/1-1092 DRWGRTALHR GAVTGHEECV DALLQHGANC LFRDSRGRTP IHLSAACGHI ENSP00000382379/1-1053 DKWGRTALHR GAVTGHEECV DALLQHGAKC LLRDSRGRTP IHLSAACGHI bmy_19903T0/1-1027 DKWGRTALHR GAVTGHEECV DALLQHGAKC LLRDSRGRTP IHLAAACGHI BACU001555/1-1083 DKWGRTALHR GAVTGHEECV DALLQHGAKC LLRDSRGRTP IHLAAACGHI 801 850 ENSTTRP00000008800/1-990 GVLGALLQSA ASMDANPAMA DNYGYTALHW ACYNGHETCV ELLLEQDVFQ ENSBTAP00000034443/1-1092 GVLGALLQSA ASMDANPAMV DNHGYTALHW ACYNGHETCV ELLLEQDVFQ ENSP00000382379/1-1053 GVLGALLQSA ASMDANPATA DNHGYTALHW ACYNGHETCV ELLLEQEVFQ bmy_19903T0/1-1027 GVLGALLQSA ASMDANPAMA DNHGYTALHW ACYNGHETCV ELLLEQDVFQ BACU001555/1-1083 GVLGALLQSA ASVDANPAMA DNHGYTALHW ACYNGHETCV ELLLEQDVFQ 851 900 ENSTTRP00000008800/1-990 KTEGNAFSPL HCAVINDNEG AAEMLIDTLG ASSVNATDSK GRTPLHAAAF ENSBTAP00000034443/1-1092 KTEGNAFSPL HCAVINDNEG AAEMLIDTLG SSIVNATDSK GRTPLHAAAF ENSP00000382379/1-1053 KTEGNAFSPL HCAVINDNEG AAEMLIDTLG ASIVNATDSK GRTPLHAAAF bmy_19903T0/1-1027 KTEGNAFSPL HCAVINDNEG AAEMLIDTLG ASSVNTTDSK GRTPLHAAAF BACU001555/1-1083 KTEGNAFSPL HCAVINDNEG AAEMLIDTLG ASSVNATDSK GRTPLHAAAF 901 950 ENSTTRP00000008800/1-990 TDHVECLQLL LSHNAHVNSV DFSGKTPLMM AAENGQTNTV EMLVSSASAD ENSBTAP00000034443/1-1092 TDHVECLQLL LSHNAHVNSV DSSGKTPLMM AAENGQTNTV EMLVSSASAD ENSP00000382379/1-1053 TDHVECLQLL LSHNAQVNSV DSTGKTPLMM AAENGQTNTV EMLVSSASAE bmy_19903T0/1-1027 TDHVECLQLL LSHNAHVNSV DSSGKTPLMM AAENGQTNTV EMLVSSASAD BACU001555/1-1083 TDHVECLQLL LSHNAHVNSV DSSGKTPLMM AAENGQTNTV EMLVSSASAD 951 1000 ENSTTRP00000008800/1-990 LTLQDNSKNT ALHLACSKXX XXXXXXXXXX XXXXXXXXXX XXXXXXPLHV ENSBTAP00000034443/1-1092 LTLQDNSKNT ALHLACSKGH ETSALLILEK ITDRNLINAT NAALQTPLHV ENSP00000382379/1-1053 LTLQDNSKNT ALHLACSKGH ETSALLILEK ITDRNLINAT NAALQTPLHV bmy_19903T0/1-1027 LTLQDNSKNT ALHLACSKGH ETSALLILEK ITDRNLINAT NAALQTPLHV BACU001555/1-1083 LTLQDNSKNT ALHLACSKGH ETSALLILEK ITDRNLINAT NAALQTPLHV 1001 1050 ENSTTRP00000008800/1-990 AARNGLTMVV QELLGKGASV LAVDEN---- ---------- ---------- ENSBTAP00000034443/1-1092 AARNGLTMVV QELLGKGASV LAVDENGYTP ALACAPNKDV ADCLALILAT ENSP00000382379/1-1053 AARNGLTMVV QELLGKGASV LAVDENGYTP ALACAPNKDV ADCLALILAT bmy_19903T0/1-1027 AARNGLTMVV QELLGKGASV LAVDENGYTP ALACAPNKDV ADCLALILAT BACU001555/1-1083 AARNGLTMVV QELLGKGASV LAVDENGYTP ALACAPNKDV ADCLALILAT 1051 1100 ENSTTRP00000008800/1-990 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000034443/1-1092 MMPISSSSPL SSLTFNAINR YTNTSKTVSF EALPIMRNEP SSYCSFNNIG ENSP00000382379/1-1053 MMPVSSSSPL SSLTFNAINR YTNTSKTVSF EALPIMRNEP SSYCSFNNIG bmy_19903T0/1-1027 MMPVSSSSPL SSLTFNAINR YTNTSKTVSF EALPIMRNEP SSYCSFNNIS BACU001555/1-1083 MMPVSSSSPL SSLTFNAINR YTNTSKTVSF EALPIMRNEP SSYCSFNNIS 1101 1150 ENSTTRP00000008800/1-990 ---------- ---------- - ENSBTAP00000034443/1-1092 GEQEYLYTDV DELNDSDSET Y ENSP00000382379/1-1053 GEQEYLYTDV DELNDSDSET Y bmy_19903T0/1-1027 GEQEYLYTDV DELNDSDSET Y BACU001555/1-1083 GEQEYLYTDV DELNDSDSET Y