KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:44:29 2014 Check: 00 .. Name: BACU017567/1-175 Len: 450 Check: 4468 Weight: 1.00 Name: ENSP00000344208/1-442 Len: 450 Check: 1586 Weight: 1.00 Name: ENSBTAP00000034496/1-445 Len: 450 Check: 1393 Weight: 1.00 Name: bmy_01808T0/1-300 Len: 450 Check: 655 Weight: 1.00 Name: ENSTTRP00000010269/1-440 Len: 450 Check: 243 Weight: 1.00 // 1 50 BACU017567/1-175 ---------- ---------- ---------- ---------- ---------- ENSP00000344208/1-442 MAGAATGSRT P---GRSELV EGCGWRCPEH GDRVAELFCR ---RCRRCVC ENSBTAP00000034496/1-445 MAGSAVLKGT PGGLGPAEPE DARGWLCSEH GDRVVELFCR ---RCRRCVC bmy_01808T0/1-300 MAGAPP-SGT PGELGPAEPE DARGWRSPEH GDRVAELFCR ---RCRRCVC ENSTTRP00000010269/1-440 MAGAAAQSGT PGGLGPAEPE DARGWRCPEH GDRVAELFCR RCRRCRRCVC 51 100 BACU017567/1-175 ---------- ---------- ---------- ---------- ---------- ENSP00000344208/1-442 ALCPVLGAHR GHPVGLALEA AVHVQKLSQE CLKQLAIKKQ QHIDNITQIE ENSBTAP00000034496/1-445 ALCPVLGSHR GHPIGLALDE AARVQKFTQE CLKHLATKKQ QQVGNITQIE bmy_01808T0/1-300 ALCRVLGSHR GHPVGLALEE AARV------ ---------- ---------- ENSTTRP00000010269/1-440 ALCLVLGSHR GHPVGLALEE AVRVQKLTQE CLKNLTTKKQ QQVGNITQ-- 101 150 BACU017567/1-175 ---------- ---------- ---------- ---------- ---------- ENSP00000344208/1-442 DATEKLKANA ESSKTWLKGK FTELRLLLDE EEALAKKFID KNTQLTLQVY ENSBTAP00000034496/1-445 DAAEKLKAHA ESSKTWLTGK FAELRLLLEE EEALAKKFID KNTQLALQAY bmy_01808T0/1-300 ---------- ---------- ---------- ---------- ---QLALQAY ENSTTRP00000010269/1-440 DAAEKLKAHA ESSKTWLTRK FTELRLLLDE EETLTKKFIE KNTQLALQAY 151 200 BACU017567/1-175 ---------- ---------- ---------- ---------- ---MQQQMSL ENSP00000344208/1-442 REQADSCREQ LDIMNDLSNR VWSISQEPDP VQRLQAYTAT EQEMQQQMSL ENSBTAP00000034496/1-445 TEQIKSCGEQ IDVMNTLSNR IWTISQETNP VQLLQEYTAT EQQIQQQMSL bmy_01808T0/1-300 REQIESCGEQ IDVMNNLSNR VWSISQEPSP VQLL------ -QQMQQQMSL ENSTTRP00000010269/1-440 REQIESYGEQ IDVMNNLSNR VWNTSQEPSP VQLLQAYTAA EQQMQQQMSL 201 250 BACU017567/1-175 GESCHSVPHS FEPGKSFFKG LVEAMQSPLQ TPLDVRLKAN AR-------- ENSP00000344208/1-442 GELCHPVPLS FEPVKSFFKG LVEAVESTLQ TPLDIRLKES INCQLSDPSS ENSBTAP00000034496/1-445 GELCHPVPHS FEPVKSFFKD LVEAMQSLLQ TPLDVRLKES RNCQLSGSC- bmy_01808T0/1-300 GESCHPVSHS FEPVKSFFKG LVEAMQSPLQ TPLDVRLKAN ENCQLSGSSG ENSTTRP00000010269/1-440 GESCHPVPHS FEPVKSFFKG LVEATQSPLQ TPLDVRLKAN VNCQLSGSSG 251 300 BACU017567/1-175 ---------T PTLERDVLHA ---------- ----RLRLSA DRP--KVRCG ENSP00000344208/1-442 TKPGTLLKTS PSPERSLLLK YARTPTLDPD TMHARLRLSA DRL--TVRCG ENSBTAP00000034496/1-445 VQPGSLLKTS PSPERSLFLK -CKTPVFFRE QAPDSLRAHC RSPGGGAGRG bmy_01808T0/1-300 AQPGSLLKTS PSPERSLL-- ---------- ---------- ---------- ENSTTRP00000010269/1-440 AQPGSLLKTS PSPERSLFLK YARTLTLEAD TLHSRVRLSA DCL--KVRCG 301 350 BACU017567/1-175 HLGWLGLKPA LHFDALWQGL GRDCFDAGSP YXXXXXXXXX XXXXXXXXXX ENSP00000344208/1-442 LLGSLGPVPV LRFDALWQVL ARDCFATGRH YWEVDVQEAG AGWWVGAAYA ENSBTAP00000034496/1-445 XLGRLGPTAA LRFDALWQVL SRDCFAAGRH YWEVDVQEAG VGWWVGAAYG bmy_01808T0/1-300 ---------- ---------- ---------- --KLDVQEAG VGWWVGAAYG ENSTTRP00000010269/1-440 HHGNLGLNPA LRFDALWQVL GRDCFDAGRR YWEVDVLEAG VGSWVGAAYG 351 400 BACU017567/1-175 XXX---XXAA ARLGCNRQSW SLELYDLEYW AFHDGQRSRL RPRDDPDRLG ENSP00000344208/1-442 SLRRRGASAA ARLGCNRQSW CLKRYDLEYW AFHDGQRSRL RPRDDLDRLG ENSBTAP00000034496/1-445 SLRRHGASDA ARLGCNRQSW CLKRYDLEYW AFHDCQRSRL RPRHDPDRLG bmy_01808T0/1-300 SLRRRGASAA ARLGCNRQSW CLELYDLEYG AFHDGQRSRL RPRDDPDRLG ENSTTRP00000010269/1-440 SLR---ASAA ARLGCNRQSW CLELYD-EYW AFHDGQRSRL RRRDDPDWLG 401 450 BACU017567/1-175 VFLD------ ---------- ---------- ---------- ---------- ENSP00000344208/1-442 VFLDYEAGVL AFYDVTGGMS HLHTFRATFQ EPLYPALRLW EGAISIPRLP ENSBTAP00000034496/1-445 VFLDYEAGVL AFYDVTGGMS HLHTFRAAFQ EPLYPALRLW EGAISISRLP bmy_01808T0/1-300 V------GVF TFYDVTGGMT HLHTFRAAFQ ELLYPALRLW EGAISISRLP ENSTTRP00000010269/1-440 VFLDYEVGVF TFYDV--GMT HLHTFRATFQ ELLYPALRLW EGAICISRLP