KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:44:30 2014 Check: 00 .. Name: ENSBTAP00000034515/1-375 Len: 413 Check: 5995 Weight: 1.00 Name: ENSP00000006053/1-397 Len: 413 Check: 9497 Weight: 1.00 Name: ENSTTRP00000009531/1-395 Len: 413 Check: 9980 Weight: 1.00 Name: bmy_12173T0/1-398 Len: 413 Check: 5420 Weight: 1.00 Name: BACU001838/1-270 Len: 413 Check: 4245 Weight: 1.00 // 1 50 ENSBTAP00000034515/1-375 GASVGL---- ---------- ---GQQHGVN KCNLFCNKMT QKIPESRLVG ENSP00000006053/1-397 MAPISLSWLL RLATFCHLTV LLAGQHHGVT KCNITCSKMT SKIPVALLIH ENSTTRP00000009531/1-395 MALPPLSWLL RLTALCHLIV LLAGQHHGVK KCNITCGKMT SEIPVARLVH bmy_12173T0/1-398 MDLPPLSWLL RLAALCHLIV LLAGQHLGVK KCNITCSKMT SEIPVARLVH BACU001838/1-270 MALLPLSWLL RLTALCHLIV LLAGQHLGVK KCNITCSKMT SEIPVARLVH 51 100 ENSBTAP00000034515/1-375 YQRNRESCND GAVILKTVKG KSFCADPKEE WVQKAMKHLD HK-ASVSQKS ENSP00000006053/1-397 YQQNQASCGK RAIILETRQH RLFCADPKEQ WVKDAMQHLD RQAAALTRNG ENSTTRP00000009531/1-395 YQRNQESCGK RAIILKTMKE KLFCADPHEK WVQKAMEHLD RKAAARAPNG bmy_12173T0/1-398 YQRNQESCGK RAIILKTMKE KLFCADPQEK WVQKAMEHLD RKAAALAPNG BACU001838/1-270 YQRNQESCGK RAIILKTMKE KLFCADPREE WVQKAMEHLD RKAAALAPNG 101 150 ENSBTAP00000034515/1-375 GTFERQTSEG KPRTTLGARE MYRSAASEVN FTGESSSL-- -----GAESA ENSP00000006053/1-397 GTFEKQIGEV KPRTTPAAGG MDESVVLEPE ATGESSSLEP TPSSQEAQRA ENSTTRP00000009531/1-395 GTFEKQIGVG EPRTSPAXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_12173T0/1-398 GTFEKQIGVG EPRTSPATRG MDWSEASETK FTSESSSP-- -----EAQRA BACU001838/1-270 GTFEKQIGV- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000034515/1-375 LGTSP----G VAGSMGTRSS STSKAPDGGT QKIELFNEAA FTTATSWQSS ENSP00000006053/1-397 LGTSPELPTG VTGSSGTRLP PTPKAQDGGP VGTELFRVPP VSTAATWQSS ENSTTRP00000009531/1-395 XXXXXXXXXX XXXXXXXXXX XXXXXXXGGP ETTELFQALP LNTTTSWQSS bmy_12173T0/1-398 FGTSPELPPE VADSRGTRSP STSKTLDGGP ERTELFNKAA VTTTTSWQSS BACU001838/1-270 ---------- ---------- ---------- ---------- ---------- 201 250 ENSBTAP00000034515/1-375 AADQPEAGLW TEGKASEATS TLVPSTQTLP T-------PV PSTQAPSTDS ENSP00000006053/1-397 APHQPGPSLW AEAKTSEAPS TQDPSTQA-- --------ST ASSPAPEENA ENSTTRP00000009531/1-395 TAYQPGADLE ADGKASEAPS TQAPSTQT-- --------PT ISYTVPENNT bmy_12173T0/1-398 TAYQPGADLE AEGKASEAPS TQAPSTQTPS TQAPSTQAPT ISHTVPEDNT BACU001838/1-270 ---------- ---------- ---------- ---------- ----VPEDNT 251 300 ENSBTAP00000034515/1-375 SGPGSLTVGI KVQDSSKNSL GSKEMSPSSA HTDAFL--GS ATVSSIFEVT ENSP00000006053/1-397 PSEGQRVWGQ GQSPRPENSL EREEMGPVPA HTDAFQDWGP GSMAHVSVVP ENSTTRP00000009531/1-395 GSEGQPGWIK GQDPTPDNSL GSKELGPTSA HTDAVM--GL SSVSDVFVVP bmy_12173T0/1-398 GPEGQPGWIK GQHPTPENSL GSKEMGPTSA HTDAFM--GP GSVSDVFVVP BACU001838/1-270 GPEGQPGWIK GQHPTPENSL GSKEMGPTSA HTDAFM--GP GSTSDVFVVP 301 350 ENSBTAP00000034515/1-375 VASEGTPSMD ALASGSWGPE TEELPKAKEP ILTTAGPRSL GILMTSVPDS ENSP00000006053/1-397 VSSEGTPSRE PVASGSW--- ---TPKAEEP IHATMDPQRL GVLITPVPDA ENSTTRP00000009531/1-395 VSSEGVPSTD PLASGSW--- ---TPKAKEP IHATMDPQRL GVLVTPIPDS bmy_12173T0/1-398 VSSEAAPSTD PLASGSW--- ---TPKVKEP IHATMDPQRL GVLITPIPDS BACU001838/1-270 VSSEAAPSTD PLASGSW--- ---TPKVQEP IHATVDPQRL GVLITPIPDS 351 400 ENSBTAP00000034515/1-375 QVATRRQAVG LLAFLGLLFC LGVAMFAYQR LQSCPHKMVG DVVEGICYVP ENSP00000006053/1-397 QAATRRQAVG LLAFLGLLFC LGVAMFTYQS LQGCPRKMAG EMAEGLRYIP ENSTTRP00000009531/1-395 QAATRRQAVG LLAFLGLLFC LGVAMFAYQS LQGCPRKMAG DMVEGLRYVP bmy_12173T0/1-398 QAATRRQAVG LLAFLGLLFC LGVAMFAYQS LQGCPRKMAG DMVEGLRYVP BACU001838/1-270 QAATRRQAVG LLAFLGLLFC LGVAMFAYQS LQGCPRKMAG DMVEGLRYVP 401 450 ENSBTAP00000034515/1-375 RSCGSNSYVL VPV ENSP00000006053/1-397 RSCGSNSYVL VPV ENSTTRP00000009531/1-395 RSCGSNSYVL VPV bmy_12173T0/1-398 RSCGSNSYVL VPV BACU001838/1-270 RSCGSNSYVL VPV