KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:44:33 2014 Check: 00 .. Name: ENSBTAP00000034540/1-623 Len: 624 Check: 4551 Weight: 1.00 Name: ENSTTRP00000003444/1-623 Len: 624 Check: 8754 Weight: 1.00 Name: bmy_00843T0/1-420 Len: 624 Check: 8467 Weight: 1.00 Name: BACU005143/1-583 Len: 624 Check: 5714 Weight: 1.00 // 1 50 ENSBTAP00000034540/1-623 MNRYTTMRQL GDGTYGSVLM GKSNESGELV AIKRMKRKFY SWDECMNLRE ENSTTRP00000003444/1-623 MNRYTTMRQL GDGTYGSVLM GKSIESGELV AIKRMKRKFY SWDECMNLRE bmy_00843T0/1-420 MNRYTTMRQL GDGTYGSVLM GKSIESGELV AIKRMKRKFY SWDECMNLRE BACU005143/1-583 MNRYTTMRQL GDGTYGSVLM GKSIESGELV AIKRMKRKFY SWDECMNLRE 51 100 ENSBTAP00000034540/1-623 VKSLKKLNHA NVIKLKEVIR ENDHLYFIFE YMKENLYQLM KDRNKLFPES ENSTTRP00000003444/1-623 VKSLKKLNHA NVIKLKEVIR ENDHLYFIFE YMKENLYQLM KDRNKLFPES bmy_00843T0/1-420 VKSLKKLNHA NVIKLKEVIR ENDHLYFIFE YMKENLYQLM KDRNKLFPES BACU005143/1-583 VKSLKKLNHA NVIKLKEVIR ENDHLYFIFE YMKENLYQLM KDRNKLFPES 101 150 ENSBTAP00000034540/1-623 VIRNIMYQIL QGLAFIHKHG FFHRDMKPEN LLCMGPELVK IADFGLAREL ENSTTRP00000003444/1-623 VIRNIMYQIL QGLAFIHKHG FFHRDMKPEN LLCMGPELVK IADFGLAREL bmy_00843T0/1-420 VIRNIMYQIL QGLAFIHKHG FFHRDMKPEN LLCMGPELVK IADFGLAREL BACU005143/1-583 VIRNIMYQIL QGLAFIHKHG FFHRDMKPEN LLCMGPELVK IADFGLAREL 151 200 ENSBTAP00000034540/1-623 RSQPPYTDYV STRWYRAPEV LLRSSAYSSP IDVWAVGSIM AELYTLRPLF ENSTTRP00000003444/1-623 RSQPPYTDYV STRWYRAPEV LLRSSVYSSP IDMWAVGSIM AELYTLRPLF bmy_00843T0/1-420 RSQPPYTDYV STRWYRAPEV LLRSSVYSSP IDMWAVGSIM AELYTLRPLF BACU005143/1-583 RSQPPYTDYV STRWYRAPEV LLRSSVYSSP IDMWAVGSIM AELYTLRPLF 201 250 ENSBTAP00000034540/1-623 PGTSEVDEIF KICQVLGTPK KSDWPEGYQL ASSMNFRFPQ CVPINLKTLI ENSTTRP00000003444/1-623 PGTSEVDEIF KICQVLGTPK KSDWPEGYQL ASSMNFRFPQ CVPINLKTLI bmy_00843T0/1-420 PGTSEVDEIF KICQVLGTPK K--------- ---------- CVPINLKTLI BACU005143/1-583 PGTSEVDEIF KICQVLGTPK KSDWPEGYQL ASSMNFRFPQ CVPINLKTLI 251 300 ENSBTAP00000034540/1-623 PNASNEAIQL MTEMLNWDPK KRPTASQALK HPYFQVGQVL GPSSHHLESK ENSTTRP00000003444/1-623 PNASSEAIQL MTEMLSWNPK RRPTASQALK HPYFQVGQVL GPSSHHLEPK bmy_00843T0/1-420 PNASSEAIQL MTEMLSWDPK KRPTASQALK HPYFQVGQIL GPSSHHLESK BACU005143/1-583 PNASSEAIQL MTEMLSWDPK KRPTASQALK HPYFQVGQVL GPSSHHLESK 301 350 ENSBTAP00000034540/1-623 QPLNKLVQPL EPKPSAADPE PQPLPDINDQ AAGPPQLKNS HQPLRSIQPP ENSTTRP00000003444/1-623 QTLNKHVQPL ESKPPVVDLE PKPLPDISDQ TAGQPQPKNS HQPLQSIQPP bmy_00843T0/1-420 QPLNKHVQPR ESKPPVVDLE PKPLPDISDQ TAGQPQPKNS HQPLQSIQPP BACU005143/1-583 QPLNKHVQPL ESKPPVVDLE PKPLPDISDQ TAGQPQSKNS HQPLQSIQPP 351 400 ENSBTAP00000034540/1-623 QNVGVQPAPK QHSQQKRPPT LFPSIVKSMP TKPGGALGHK GARRRWGQAV ENSTTRP00000003444/1-623 QNTGVQQPPK QQNQQKQPPT LFPSIVKNMP TKPNGTLGHK GARRRWGQPV bmy_00843T0/1-420 QNTGVQQXPK QQSQQKQPPT LFPSIVKNMP TKPSGTLGHK GARRRWGQAV BACU005143/1-583 QNTGVQQAPK QQSQQKQPPT LFPSIVKNMP TKPSGTLGHK GARRRWGQAV 401 450 ENSBTAP00000034540/1-623 CKAGDGWADL EDSDFGASHS KKPSMGSSKE TRSKESPFRL PESVPAGSSY ENSTTRP00000003444/1-623 FKVEDGWEEF EECDFGVSHS KKPSMRVFKE TRKTDSPSWL PESVPAGPNH bmy_00843T0/1-420 FKAEDGWEEF EDCDVGVSHS KKPSMSVFKE TRKKDSPFR- ---------- BACU005143/1-583 FKAEDGWEVF EDCDVGVSHS KKPSISVFKE TRKKDSPFRL PESVPAGPNH 451 500 ENSBTAP00000034540/1-623 STRENKSLPA AVTLKSDSEL SAASTAKQYY LKQSRYLPGV NPKNVSMVAS ENSTTRP00000003444/1-623 STEENKNLPP AISLKCDSEL STASTAKQYY L-QSRYLPGV NPKNVSLTGS bmy_00843T0/1-420 ---------- ---------- ---------- ---------- ---------- BACU005143/1-583 STGENKNLPA AISLKSDSEL STASTAKQYY LKQSRYLPGV SPKNVSLIAS 501 550 ENSBTAP00000034540/1-623 GKDMNPYVWN NRLFPKSLGP LGAELAFRRN NTGNLGSYAP YNQSGYIPSF ENSTTRP00000003444/1-623 GKDTNPYTWN SQLFPKSLGP TGTELAFKGS NAGNLGSYAT YNQSGYIPSF bmy_00843T0/1-420 ---------- ---------- ---------- ---------- ---------- BACU005143/1-583 GKDMNPYTWN SQLFPKSLGP MGAELAFKRS NA-------- ---------- 551 600 ENSBTAP00000034540/1-623 FKKEVGSAGQ RIHLAPIGAT ASEYPWNTKT GRGQFSGPTY NPTAKNLNIV ENSTTRP00000003444/1-623 LKKEVGSAGQ RIHLAPLGAT ASEYPWNTKT GQGQFSGPTY NPTAKNLNIV bmy_00843T0/1-420 ---------- ---------- ---------- ---------- ---------- BACU005143/1-583 ---------- ---------- --EYPWNTKT GQGHFSGPTY NPTAKNLNIV 601 650 ENSBTAP00000034540/1-623 N-RAQPVSSV HGRTDWVAKY GGHR ENSTTRP00000003444/1-623 NTRAQPVSSV HGRTDWVAKY GGHR bmy_00843T0/1-420 ---------- ---------- ---- BACU005143/1-583 N-RAQPVSSV HGRTDWVAKY GGHR