KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:44:37 2014 Check: 00 .. Name: ENSP00000245544/1-656 Len: 732 Check: 8289 Weight: 1.00 Name: ENSBTAP00000034574/1-656 Len: 732 Check: 5262 Weight: 1.00 Name: bmy_15333T0/1-589 Len: 732 Check: 6272 Weight: 1.00 Name: BACU020206/1-645 Len: 732 Check: 4863 Weight: 1.00 Name: ENSTTRP00000013652/1-656 Len: 732 Check: 8561 Weight: 1.00 // 1 50 ENSP00000245544/1-656 MEELDGEPTV TLIPGVNSKK NQMYFDWGPG EMLVCETSFN KKEKSEMVPS ENSBTAP00000034574/1-656 MEEFDGEPTV TWIPGVNSQK KQMCFDWGPG EMLVCETSFN KKEKSEMVAG bmy_15333T0/1-589 ---------- ---------- ---------- ---------- ---------- BACU020206/1-645 ---------- -LIPGVNSQK KQMCFDWGPG EMLVCETSFN KKEKSDMVPG ENSTTRP00000013652/1-656 MEELDGEPTV TLIPGVNSQK KQMCFDWGPG EMLVCETSFN KKEKSDMMPG 51 100 ENSP00000245544/1-656 CPFIYIIRKD VDVYSQILRK LFNESHGIFL GLQRIDEELT GKSRKSQLVR ENSBTAP00000034574/1-656 CPFIHIIRKD IDVYSKILRK LFNESHGIFV GLQRIEEELT GKSRKAQLVR bmy_15333T0/1-589 ---------- ---------- ---------- ---------- ---------- BACU020206/1-645 CPFIHIIRKN EDVYSQILRK LFNESHGIFV GLQRIEEELT GKSRKTQLVR ENSTTRP00000013652/1-656 CPFIHIIRKN EDVYSQILRK LFNESHGIFV GLQRIEEELT GKSRKTQLVR 101 150 ENSP00000245544/1-656 VSKNYRSVIR ACMEEMHQVA IAAKDPANGR QFSSQVSILS AMELIWNLCE ENSBTAP00000034574/1-656 VSKNYRSVIR ACMEEMHQFA VADKDSAIGR QFSSQVSILS AVELIWNLCE bmy_15333T0/1-589 ---------M SCV-----LL VAGKDPAGGR QFSIQVSSLS AMELIWNLCE BACU020206/1-645 VSKNYRSVIR ACLEEMHQLA IAGKDPAIGR QFSIQVSSLS AMELIWNLCE ENSTTRP00000013652/1-656 VSKNYRSVIR ACLEEMHQLA IAGKDPASDR QFSIQVSSLS AMELIWNLCE 151 200 ENSP00000245544/1-656 ILFIEVAPAG PLLLHLLDWV RLHVCEVDSL SADVLGSENP SKHDSFWNLV ENSBTAP00000034574/1-656 ILFIEVAPAG PLLLYLLDWV RLHVCEVDSL SADVLGSENP SKHESFWNLV bmy_15333T0/1-589 ILFIEVAPAG PLLLHLLDWV QLHVCEVDSL SADVLGSENP SKHERFWNLV BACU020206/1-645 ILFIEVAPAG PLLLHLLDWV QLHVCEVDSL SADVLGSENP SKHERFWNLV ENSTTRP00000013652/1-656 ILFIEVAPAG PLLLHLLDWV QLHVCEVDSL SADVLGSENP SKHERFWNLV 201 250 ENSP00000245544/1-656 TILVLQGRLD EARQMLSKEA DASPASAGIC RIMGDLMRTM PILSPGNTQT ENSBTAP00000034574/1-656 TTLVLQGRLD EARQMLSKEA DSNPTSAGMC RVLGDLMRTM PILSPGNTQT bmy_15333T0/1-589 TVLVLQGRLD EARQMLSKEA DTSPTSAGMC RILGDLMRTM PVLSPGNTQT BACU020206/1-645 TVLVLQGRLD EARQMLSKEA DSSPTSAGMC RILGDLMRTM PVLSPGNTQT ENSTTRP00000013652/1-656 TVLVLQGRLD EARQMLSKEA NTSPTSAGMC RILGDVMRTM PVLSPGNTQT 251 300 ENSP00000245544/1-656 LTELELKWQH WHEECERYLQ DSTFATSPHL ESLLK----- ---------- ENSBTAP00000034574/1-656 LTELELRWQH WHEECERHLQ DGTFASNPHL ESLCK----- ---------- bmy_15333T0/1-589 LTELELKWQH WHEECERHLQ DGTFASSPHL ESLCKVCGKQ VQARVFPGFP BACU020206/1-645 LTELELKWQH WHEECERHLQ DGTFASSPHL ESLCK----- ---------- ENSTTRP00000013652/1-656 LTELELKWQH WHEGCERHLQ DGTFASSPHL ESLCK----- ---------- 301 350 ENSP00000245544/1-656 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000034574/1-656 ---------- ---------- ---------- ---------- ---------- bmy_15333T0/1-589 RGLWHPVQQR QVLLRQGCLL ALREGESFQT RCSSRGQEHY REVTPRPQGK BACU020206/1-645 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013652/1-656 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000245544/1-656 -----IMLGD EAALLEQKEL LSNWYHFLVT RLLYSNPTVK PIDLHYYAQS ENSBTAP00000034574/1-656 -----VLLGD DAALLEHKEL LSNWYHFLVT RLLYSQPTVK PMDLHLYAQS bmy_15333T0/1-589 RLSCQIMLGD EAALLEQRAL LSNWYHFLVT RLLYSHPTVK PMDLHFYAQV BACU020206/1-645 -----VMLGE EAALLEQKGL LSTWYHFLVT RLLYCHPTVK PTDLHFYAQS ENSTTRP00000013652/1-656 -----IMLGD EAALLEQKEL LSNWYHFLVT RLLYSHPTVK PMDLHFYAQS 401 450 ENSP00000245544/1-656 SLDLFLGGES SPEPLDNILL AAFEFDIHQV IKECSIALSN WWFVAHLTDL ENSBTAP00000034574/1-656 SLDLFLGGES SPEPLDNILM AAFEFDIHQV IKECSIALSN WWFVAHLTDL bmy_15333T0/1-589 SLSAL----- ---------- ---------- ----GIALSN WWFVAHLTDL BACU020206/1-645 SLDLFLGGES SPEPLDNILM AAFEFDIHQV IKECSIALSN WWFVAHLTDL ENSTTRP00000013652/1-656 SLDLFLGGES SPEPLDNILM AAFEFDIHQV IKECSIALSN WWFVAHLTDL 451 500 ENSP00000245544/1-656 LDHCKLLQSH NLYFGSNMRE FLLLEYASGL FAHPSLWQLG VDYFDYCPEL ENSBTAP00000034574/1-656 LDHCKLLQSH NLYFGSNMRE FLLLEYASGL FAHHSLWQLG VDYCDHCPEL bmy_15333T0/1-589 LDHCRLLQSH NLYFGSNMRE FLLLEYASGL FAHHSLWQLG VDYFDYCPEL BACU020206/1-645 LDHCKLLQSH NLYFGSNMRE FLLLEYASGL FAHHSLWQLG VDYFDYCPEL ENSTTRP00000013652/1-656 LDHCKLLQSH NLYFGSNMRE FLLLEYASGL FAHHSLWQLG VDYFDYCPEL 501 550 ENSP00000245544/1-656 GRVSLELHIE RIPLNTEQKA LKVLRICEQR QMTEQVRSIC KILAMKAVRN ENSBTAP00000034574/1-656 GRVSLELHIE RIPLTTEQKA LKVLRVCEQR QMTEQVRSIC KVLAMKAVRN bmy_15333T0/1-589 GRVSLELHVE RIPLSTEQKA LKVLRVCEQR QMTEQVRSIC KILAMKAVRN BACU020206/1-645 GRVSLELHIE RIPLSTEQKA LKVLRVCEQR QMTEQVRSIC KILAMKAVRN ENSTTRP00000013652/1-656 GRVSLELHIE RIPLSTEQKA LKVLRVCEQR QMTEQVRSIC KILAMKAVRN 551 600 ENSP00000245544/1-656 NRLGSALSWS IRAKDAAFAT LVSDRFLRDY CERGCFSDLD LIDNLGPAMM ENSBTAP00000034574/1-656 NRLGSALSWS IRAKDAAFAT LVSDRFLRDY CERGCFSDLD LIDNLGPAMM bmy_15333T0/1-589 NRLGSALSWS IRAKDAAFAT LVSDRFLRDY CERGCFSDLD LIDNLGPAMM BACU020206/1-645 NRLGSALSWS IRAKDAAFAT LVSDRFLRDY CERGCFSDLD LIDNLGPAMM ENSTTRP00000013652/1-656 NRLGSALSWS IRAKDAAFAT LVSDRFLRDY CERGCFSDLD LIDNLGPAMM 601 650 ENSP00000245544/1-656 LSDRLTFLGK YREFHRMYGE KRFADAASLL LSLMTSRIAP RSFWMTLLTD ENSBTAP00000034574/1-656 LSDRLTFLGK YREFHRLYGE KCFVDAASLL LSLMTSQIAP RSFWMTLLTD bmy_15333T0/1-589 LSDRLTFLGK YREFHRLYGE KRFVDAASLL LSLMTSQIAP RSFWMTLLTD BACU020206/1-645 LSDRLTFLGK YREFHRLYGE KRFVDAASLL LSLMTSQIAP RSFWMTLLTD ENSTTRP00000013652/1-656 LSDRLTFLGK YREFHRLYGE KRFVDAASLL LSLMTSQIAP RTFWMTLLTD 651 700 ENSP00000245544/1-656 ALPLLEQKQ- -----VIFSA EQTYELMRCL EDLTSRRPVH GESDTEQLQD ENSBTAP00000034574/1-656 ALPLLEQKQ- -----VIFSA EQTYELLRCL EDLTSGRPLC GEPDAQQLQD bmy_15333T0/1-589 ALPLLEQKQV QVESTVIFSA EQTYELMRCL EDLTSGRPVR GEPDAQQLQD BACU020206/1-645 ALPLLEQKQ- -----VIFSA EQTYELMRCL EDLTSERPVR GEPDAQQLQD ENSTTRP00000013652/1-656 ALPLLEQKQ- -----VIFSA EQTYELMRCL EDLTSGRPVR GEPDAQQLQD 701 750 ENSP00000245544/1-656 DDIETTKVEM LRLSLARNLA RAIIREGSLE GS ENSBTAP00000034574/1-656 DDIETTKVEI LRLALARNLA RSIIKEGSLE GS bmy_15333T0/1-589 DDVETTKVEM LRLALARNLA RSIIKEGSLE GS BACU020206/1-645 DDVETTKVEM LRLALARNLA RSIIKEGSLE GS ENSTTRP00000013652/1-656 DDVETTKVEM LRLALARNLA RSIIKEGSLE GS