KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:44:38 2014 Check: 00 .. Name: ENSP00000156626/1-600 Len: 601 Check: 274 Weight: 1.00 Name: ENSBTAP00000034579/1-598 Len: 601 Check: 3662 Weight: 1.00 Name: bmy_21935T0/1-537 Len: 601 Check: 2273 Weight: 1.00 Name: BACU011547/1-592 Len: 601 Check: 6047 Weight: 1.00 // 1 50 ENSP00000156626/1-600 MRSCLWRCRH LSQGVQWSLL LAVLVFFLFA LPSFIKEPQT KPSRHQRTEN ENSBTAP00000034579/1-598 MRPCPRRLCR LDQTVRGLLL LAVLIFFLFT LPSFIKEPNT KPSRNEHQQN bmy_21935T0/1-537 ---------- ---------- ---------- ---------- ----NQHREN BACU011547/1-592 MRPCPRRPSC LGQAVQWLLL LAVLIFFLFA LPSFIKEPNT TPTRNQHREN 51 100 ENSP00000156626/1-600 IKERSLQSLA KPKSQAPTRA RRTTIYAEPV PENNALNTQT QPKAHTTGD- ENSBTAP00000034579/1-598 IKERSLELLQ NATSQAPTPR RRATTHVESV QGTRTRDTHP KATTLTADQR bmy_21935T0/1-537 IKERSPELLQ KATSQAPTTG SRTTAHVESA QGTSMQDTPH EATANTAGEG BACU011547/1-592 IKERSPELLQ KATSQAPTTG SRTTAHVESA QGTSMQDTHP ETTANTAGEG 101 150 ENSP00000156626/1-600 RGKEANQAPP EEQDKVPHTA QRAAWKSPEK EKTMVNTLSP RGQDAGMASG ENSBTAP00000034579/1-598 RRVQTSKARA EEPGRVPTPI GKAAPQTQAS KDTRADTLPP MAGGGGVASS bmy_21935T0/1-537 RGVEAGKASA EEPGRAPSTA RMAAPETQAS KDTAGDTLPP RAQVGGVASG BACU011547/1-592 RGAEAGKASA EEPGRAPSTA RMAAPETQAS KDTAGDTLPP RAQVGGVASG 151 200 ENSP00000156626/1-600 RTEAQSWKSQ DTKTTQGNGG QTRKLTASRT VSEKHQGKAA TTAKTLIPKS ENSBTAP00000034579/1-598 RTEAPSLNSQ NPRMTKGSGD RKARPTGPGA VPTKLRDSPA TAAKTLLPKH bmy_21935T0/1-537 WTEAPSLNSQ DPRTTKGSGD QSARPTAPRM VPTKLQGNAA ATARTPLPEN BACU011547/1-592 WTEAPPLNSQ DPRTTKGSGD QSMRPTAPRM VPTKLRGNAA ATARTPLPEN 201 250 ENSP00000156626/1-600 QHRMLAPTGA VSTRTRQKGV TTAVIPPKEK KPQATPPPAP FQSPTTQRNQ ENSBTAP00000034579/1-598 RAGAQTPGGG GQEGKRARGA SPAAAPSQD- RAQPTRSSAP LQSPATQRSQ bmy_21935T0/1-537 QAGVQTPAGA GPTGRGVRGA TTEAVPPKD- RAQATPSSAP LQSPTTQRGQ BACU011547/1-592 QAGVQTPAGA GPTGRGVRGA TTEAVPPKD- RAQATPSSAP LQSPTTQRGQ 251 300 ENSP00000156626/1-600 RLKAANFKSE PRWDFEEKYS FEIGGLQTTC PDSVKIKASK SLWLQKLFLP ENSBTAP00000034579/1-598 KLKATNFKSE PQWDFEDEYS LEVGGLQTTC PDSVKIKASK SPWLRTLFLP bmy_21935T0/1-537 RLRAANFKSE PQWDFEEEYS LEVSGLQT-- ---------- -----NLFLP BACU011547/1-592 RLRAANFKSE PQWDFEEEYS LE------TC PDSVKIKASK SPWLQNLFLP 301 350 ENSP00000156626/1-600 NLTLFLDSRH FNQSEWDRLE HFAPPFGFME LNYSLVQKVV TRFPPVPQQQ ENSBTAP00000034579/1-598 NLTLFLDSGH FNQSEWDRLE HFAPPFGFME LNFSLVQKVV ARFPPVPQQQ bmy_21935T0/1-537 NLTLFLDSRH FNQSEWGRLE HFAPPFGFME LNFSLVQKVV PCFPPVPKQQ BACU011547/1-592 NLTLFLDSRH FNQSEWGRLE HFAPPFGFME LNFSLVQKVV SCFPPVPRQQ 351 400 ENSP00000156626/1-600 LLLASLPAGS LRCITCAVVG NGGILNNSHM GQEIDSHDYV FRLSGALIKG ENSBTAP00000034579/1-598 LLLASLPAGS SQCISCAVVG NGGILNNSHV GPEIDSHDYV FRLSGAIIKG bmy_21935T0/1-537 LLLASLPAGS SQCISCAVVG NGGILNNSQV GPEIDGHDYV FRLSGAVIKG BACU011547/1-592 LLLASLPAGS SRCISCAVVG NGGILNNSQV GPEIDGHDYV FRLSGAVIKG 401 450 ENSP00000156626/1-600 YEQDVGTRTS FYGFTAFSLT QSLLILGNRG FKNVPLGKDV RYLHFLEGTR ENSBTAP00000034579/1-598 YEHDVGTRTS FYGFTAFSLT QSLLILGSRG FPHAPLGQDV RYLHFLEGTR bmy_21935T0/1-537 YEQDVGTRTS FYGFTAFSLT QSLLILGNRG FRHVPLGKDV RYLHFLEGTR BACU011547/1-592 YEQDVGTRTS FYGFTAFSLT QSLLILGNRG FRHVPLGKDV RYLHFLEGTR 451 500 ENSP00000156626/1-600 DYEWLEALLM NQTVMSKNLF WFRHRPQEAF REALHMDRYL LLHPDFLRYM ENSBTAP00000034579/1-598 DYEWLEALLL NRTLTSRNLS WFRRRPQEAF QEALQLDRYL LLHPDLLRYM bmy_21935T0/1-537 DYEWLEALLL NQTLVTKNLF WFRRRPQEAF REGLQLDRYL LLHPDLLRYM BACU011547/1-592 DYEWLEALLL NQTLVTKNLS WFRRRPQEAF REGLQLDRYL LLHPDLLRYM 501 550 ENSP00000156626/1-600 KNRFLRSKTL DGAHWRIYRP TTGALLLLTA LQLCDQVSAY GFITEGHERF ENSBTAP00000034579/1-598 KNRFLRSKTL NTAHWRIYRP TTGALLLLTA LQLCDQVSAY GFITEGHERF bmy_21935T0/1-537 KYRFLRSKTL NTVHWQIYRP TTGALLLLTA LQLCDQVSAY GFITKGHEHF BACU011547/1-592 KNRFLRSKTL NTVHWRIYRP TTGALLLLTA LQLCDQVSAY GFITKGHEHF 551 600 ENSP00000156626/1-600 SDHYYDTSWK RLIFYINHDF KLEREVWKRL HDEGIIRLYQ RPGPGTAKAK ENSBTAP00000034579/1-598 SDHYYDKSWK RTIFYTNHDF KLERALWKRL HDEGIIRLYQ R--PITSKPT bmy_21935T0/1-537 SDHYYDKSWK RTIFYTNHDF KLERTLWKRL HDEGIIQLYQ H--PVTAKPT BACU011547/1-592 SDHYYDKSWK RTIFYTNHDF KLERTLWKRL HDEGIIRLYQ H--PVTAKPT 601 650 ENSP00000156626/1-600 N ENSBTAP00000034579/1-598 I bmy_21935T0/1-537 M BACU011547/1-592 M