KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:44:38 2014 Check: 00 .. Name: ENSP00000329684/1-387 Len: 388 Check: 7104 Weight: 1.00 Name: ENSBTAP00000034586/1-278 Len: 388 Check: 6484 Weight: 1.00 Name: ENSTTRP00000015075/1-382 Len: 388 Check: 8395 Weight: 1.00 Name: bmy_13789T0/1-344 Len: 388 Check: 1708 Weight: 1.00 Name: BACU011533/1-302 Len: 388 Check: 7193 Weight: 1.00 // 1 50 ENSP00000329684/1-387 MNVSGCPGAG NASQAGGGGG WHPEAVIVPL LFALIFLVGT VGNTLVLAVL ENSBTAP00000034586/1-278 MNGSGGLDTE DTSEAGGGSS WQPEAVIVPT LFALIFLVGT VGNALVLAVL ENSTTRP00000015075/1-382 MNGSGGLNTE DTNEAGGRGS WQ----IVPM LFALIFLVGT IGNSLVLAVL bmy_13789T0/1-344 MNGSGGLDTE DTNEAGGGGS WRPEAVIVPM LFALIFLVGT IGNSLVLAVL BACU011533/1-302 MNGSGGLDTE DTNEAGGGGS WQPEAVIVPM LFALIFLVGT IGNSLVLAVL 51 100 ENSP00000329684/1-387 LRGGQAVSTT NLFILNLGVA DLCFILCCVP FQATIYTLDG WVFGSLLCKA ENSBTAP00000034586/1-278 LRGGQAVSTT NLFILNLGVA DLCFIVCCVP FQATIYTLDD WVFGSLLCKA ENSTTRP00000015075/1-382 LRGGQAVNTT NLFILNLGVA DLCFIVCCVP FQATIYTLDD WVFGSLLCKA bmy_13789T0/1-344 LRGGQAVSTT NLFILNLGVA DLCFIVCCVP FQATIYTLDB WVFGSLLCKA BACU011533/1-302 LRGGQAVSTT NLFILNLGVA DLCFIVCCVP FQATIYTLDD WVFGSLLCKA 101 150 ENSP00000329684/1-387 VHFLIFLTMH ASSFTLAAVS LDRYLAIRYP LHSRELRTPR NALAAIGLIW ENSBTAP00000034586/1-278 VHFLIFLTMH ASSFTLAAVS LDRYLAIRYP LHSRELRTPR NAMAAISLVW ENSTTRP00000015075/1-382 VHFLIFLTMH ASSFTLAAVS LDRYLAIRYP LHSRELRTLR NALAVIGLIW bmy_13789T0/1-344 VHFLIFLTMH ASSFTLAAVS LDRYLAIRYP LHSSELRTPR NALAAVGLIW BACU011533/1-302 VHFLIFLTMH ASSFTLAAVS LDRYLAIRYP LHSRELRKPR NALAAVGLIW 151 200 ENSP00000329684/1-387 GLSLLFSGPY LSYYRQSQLA NLTVCHPAWS APRRRAMDIC TFVFSYLLPV ENSBTAP00000034586/1-278 GLSLLFSAPY LSYYRQSRLA NLTVCHPAWS APRRRAMDLC TFVVSYLLPV ENSTTRP00000015075/1-382 GLSLLFSGPY LSYYRQSRLA NLTVCRPAWS APRRRAMDLC TFVFSYLLPV bmy_13789T0/1-344 GLSLLFSRPY LSYYRQSRLA NLTVCHPAWS APRRRAMDLC TFVFSYLLPM BACU011533/1-302 GLSLLFSGPY LSYYRQSRLA NLTVCHPAWS APRRRAMDLC TFVFSYLLPV 201 250 ENSP00000329684/1-387 LVLGLTYART LRYLWRAVDP VAAGSGARRA KRKVTRMILI VAALFCLCWM ENSBTAP00000034586/1-278 LVLGLTYART LRYLWRAVDP TTAGSGARRA KRKVTRMIII VAALFCLCWM ENSTTRP00000015075/1-382 LVLGLTYART LRYLWRAVDP VAAGSGARRA KRKLTRMIVI VAALFCLCWM bmy_13789T0/1-344 LVLGLTYART LRYLWRAVDP VAAGSGARRA KRKVTRMIII VAALFCLCWM BACU011533/1-302 LVLGLTYART LRYLWRAVDP VAAGSGARRA KRKVTRMIIV VAALFCLCWM 251 300 ENSP00000329684/1-387 PHHALILCVW FGQFPLTRAT YALRILSHLV SYANSCVNPI VYALVSKHFR ENSBTAP00000034586/1-278 PHHTLILCVW FGRFPLTRAT YALRILSH-- ---------- ---------- ENSTTRP00000015075/1-382 PHHALNLCVW FGRFPLTRAT YALRILSHLV SYSNSCVNPI VYALVSKHFR bmy_13789T0/1-344 PHHALILCVW FGRFPLTRAT YALRILSHLV SYSNSCVNPI VYALVSKHFR BACU011533/1-302 PHHALILCVW FGRFPLTRAT YALRILSHLV SYSNSCVNPI VYALVSKHFR 301 350 ENSP00000329684/1-387 KGFRTICAGL LGRAPGRASG RVCAAARGTH SGSVLERESS DLLHMSEAAG ENSBTAP00000034586/1-278 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015075/1-382 KGFRKICAGV LRRAPRKASG RVCVAAQGTH SGSVLEREST DVTHVSEAR- bmy_13789T0/1-344 KGFRKICAGL LRHAPRRASG RLCVAAQGTH NGSVLEREST DVTH------ BACU011533/1-302 KG-------- ---------- ---------- ---------- ---------- 351 400 ENSP00000329684/1-387 ALRPCPGASQ PCILEPCPGP SWQGPKAGDS ILTVDVA- ENSBTAP00000034586/1-278 ---------- ---------- ---------- -------- ENSTTRP00000015075/1-382 ALCSCAGASL P-VLELGPSL SWRDQKAPKA TLTVNVTR bmy_13789T0/1-344 ---------- ---------- ---------- -------- BACU011533/1-302 ---------- ---------- ---------- --------