KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:44:39 2014 Check: 00 .. Name: ENSP00000365435/1-461 Len: 521 Check: 6613 Weight: 1.00 Name: ENSBTAP00000034614/1-459 Len: 521 Check: 8419 Weight: 1.00 Name: ENSTTRP00000004349/1-400 Len: 521 Check: 1844 Weight: 1.00 Name: bmy_12766T0/1-441 Len: 521 Check: 9343 Weight: 1.00 Name: BACU002967/1-512 Len: 521 Check: 573 Weight: 1.00 // 1 50 ENSP00000365435/1-461 ---------- ---------- ---------- ---------- -----MAPVA ENSBTAP00000034614/1-459 ---------- ---------- ---------- ---------- -----MAPTA ENSTTRP00000004349/1-400 ---------- ---------- ---------- ---------- ---------- bmy_12766T0/1-441 ---------- ---------- ---------- ---------- --MSVEPQQG BACU002967/1-512 MPLLSVMADE PPLPGSGVIA VSAAPRSLRD SRGPPKIQAQ MYSFLGPPPG 51 100 ENSP00000365435/1-461 VWAALA-VGL ELWA------ --AAHALPAQ VAFTPYAPEP GSTCRLREYY ENSBTAP00000034614/1-459 FWAALA-VGL QFWA------ --AGRAVPAQ AVFTPYIPEP GSSCRQQEYY ENSTTRP00000004349/1-400 ---------- ---------- ---------- ---------- ---------- bmy_12766T0/1-441 EGQTLAGHKM GIWA------ --------YS AVFVPYVPEP GSSCRLQEYY BACU002967/1-512 LLALPC-SGS GHYNRPPPGA LDTGSDPPPP AVFIPYVPEP GSSCRLQEYY 101 150 ENSP00000365435/1-461 DQTAQMCCSK CSPGQHAKVF CTKTSDTVCD SCEDSTYTQL WNWVPECLSC ENSBTAP00000034614/1-459 NQKIQMCCSK CPPGYRVQSL CNMTLDTICA SCESSTYTQL WNLVTACFSC ENSTTRP00000004349/1-400 -----MCCSK CPPXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_12766T0/1-441 DTKVQMCCSK CPPGYHVHSL CNKTSDTVCD SCESSTYTQL WNLVPACFSC BACU002967/1-512 DTKVQMCCNK CPPGYHVHSS CNKTSDTVCD SCESSTYTRL WNLVPACFSC 151 200 ENSP00000365435/1-461 GSRCSSDQVE TQACTREQNR ICTCRPGWYC ALSKQEGCRL CAPLRKCRPG ENSBTAP00000034614/1-459 NSRCSSDQVE TQACTTKQNR ICTCKPGWYC TLGRQEGCRL CVALRKCGPG ENSTTRP00000004349/1-400 XXXXXXXQLE TQACTAKQNR ICTCKPGWYC TLGRQEGCRL CVPLRKCGPG bmy_12766T0/1-441 NSRCSSDQSE TQACTTKQNR ICTCKPGWYC TLGRQEGCRL CVPLRKCGPG BACU002967/1-512 NSRCSSDQLE TQACTTKQNR ICTCKPGWYC TLGRQEGCRL CVPLRKCGPG 201 250 ENSP00000365435/1-461 FGVARPGTET SDVVCKPCAP GTFSNTTSST DICRPHQICN VVAIPGNASM ENSBTAP00000034614/1-459 FGVAKPGTAT TNVICAPCGP GTFSDTTSYT DTCKPHRNCS SVAIPGTAST ENSTTRP00000004349/1-400 FGVAKPGTAT SNVACAPCAP GTFSDTTSST DTCRPHRICS SVAIRGTSKM bmy_12766T0/1-441 FGVAKPGTAT SNVACAPCAP GTFSDTTSST DTCRPHRICS SVAVRGTSEM BACU002967/1-512 FGVARPGTAT SNVACAPCAP GTFSDTTSST DTCRPHRICS SVAVRGTSEM 251 300 ENSP00000365435/1-461 DAVCTSTSPT RSMAPGAVHL PQPVSTRSQH TQPTPEPSTA PSTSFLLPMG ENSBTAP00000034614/1-459 DAVCTSVLPT RKVARG---- --PATTRSQH MEPTLGPSTA PSTFFLLPKV ENSTTRP00000004349/1-400 DAVCTSVLPT LKVT------ --PQLTRSQH VEPTPGSSTA PSTSVRLPMA bmy_12766T0/1-441 DAVCTSVLPT LKGTPG---- --LALTRSQH MEPTPGPSTA PSTSVRLTMV BACU002967/1-512 DAVCTSVLPT LKGTPG---- --PALTRSQH VEPTPGPSTA PSTSVRLTMV 301 350 ENSP00000365435/1-461 PSPPA---EG -STGDFALPV GLIVGVTALG LLIIGVVNCV IMTQVKKKPL ENSBTAP00000034614/1-459 PSPPSSPVEQ PNTGNISLPI ELIVGVTALG LLLIVVVNCV IMTQKKKKPF ENSTTRP00000004349/1-400 PGPPSYPVEG RNTANMSLPI GLIVGVTALG LLIIVLVNCV IMTQKKKKPF bmy_12766T0/1-441 PGPPSYPVEG RNTANISFPI GLIVGVTAL- ---------- ------EKPF BACU002967/1-512 PDRPSYPVEG RNTANISFPI GLIVGVTALG LLIIVLVNCV IMTQKKKKPF 351 400 ENSP00000365435/1-461 CLQREAKVPH LPADKARGTQ GPEQQHLLIT APSSSSSSLE SSASALDRRA ENSBTAP00000034614/1-459 CLQGDAKVPH LPANKAQGAP GPEQQHLLTT APSSSSSSLE SSTSSTDKRA ENSTTRP00000004349/1-400 CLHGDAKVPH LPADKARSAP GPEQQHLLTT APSSSSSSLE SSAGAADRRA bmy_12766T0/1-441 CLHGDAKVPH LPADKARSAP GPEQQLLLTT APSSSSSSLE SSASATDRRA BACU002967/1-512 CLHGDAKVPH LPADKARSAP GLEQQHLLTT APSSSSSSLE SAASATDRRA 401 450 ENSP00000365435/1-461 PTRNQPQAPG VE-ASGAGEA RASTGSS-DS SPGGHGTQVN VTCIVNVCSS ENSBTAP00000034614/1-459 PTRSQLQSPG VEKASTSGEA QTGCSSS-EA SSGGHGTQVN VTCIVNVCSG ENSTTRP00000004349/1-400 PTRPQLQAPG V------GKA PDSCGSS-EA SSGGHGTQVN VTCIVNVCSG bmy_12766T0/1-441 PSRPQLQAPG VEKAGGSGEA PASCGSSAEA SSGGHGTQVN VTCIVNVCSS BACU002967/1-512 PTRPQLQAPG VEKAGGSGEA PASCGSS-EA SAGGHGTQVN VTCIVNVCSS 451 500 ENSP00000365435/1-461 SDHSSQCSSQ ASSTMGDTDS SPSESPKDEQ VPFSKEECAF RSQLETPETL ENSBTAP00000034614/1-459 PDHSSQCPSQ AGSTR-DTDA STPNSPKEEQ VPFSKEERPF QSQPGAPETL ENSTTRP00000004349/1-400 SDHSSQCPSQ ASSTR-DTDT SPSGSPKDEH VPFSKEECPF QSQPEAPETL bmy_12766T0/1-441 SDHSSRCPSQ ANSTR-DTDT SPSGSPKDEQ VPFSKEECPF QSQPGAPETL BACU002967/1-512 SDHSSQCPSQ ASSTR-DTDT SPSSSPNDEQ VPFSKEECPF QSQPGAPETL 501 550 ENSP00000365435/1-461 LGSTEEKPLP LGVPDAGMKP S ENSBTAP00000034614/1-459 LQGLEEKPLP LGVPDAGMKP S ENSTTRP00000004349/1-400 LQSPEEKPLP LGVPDAGMKP S bmy_12766T0/1-441 LQSPEEKPLP LGVPDAGMKP S BACU002967/1-512 LQSPEEKPLP LGVPDAGMKP S