KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:44:42 2014 Check: 00 .. Name: ENSBTAP00000034638/1-1103 Len: 1121 Check: 8192 Weight: 1.00 Name: bmy_10254T0/1-881 Len: 1121 Check: 9614 Weight: 1.00 Name: BACU006150/1-431 Len: 1121 Check: 1866 Weight: 1.00 Name: ENSTTRP00000008691/1-1099 Len: 1121 Check: 3416 Weight: 1.00 // 1 50 ENSBTAP00000034638/1-1103 MAAMAPALTD AAAETHHIRF KLAPPSSTLS PGSAENNGNA NILIAANGTK bmy_10254T0/1-881 --MFLDIFRR RRSE-----W RWAADRAAIV ---------- --------SR BACU006150/1-431 MAAMAPALTD AAAEAHHIRF KLAPPSSTLS PGSAENNGNA NILIAANGTK ENSTTRP00000008691/1-1099 MAAMAPALTD AAAEAHHIRF KLAPPSSTLS PGSAENNGNA NILIAANGTK 51 100 ENSBTAP00000034638/1-1103 RKAIAAEDPS LDFRNNPTKE DLGKLQPLVA SYLCSDVTSV PSKESLKLHG bmy_10254T0/1-881 WNWLQAHVSD LEYRIRQQTD IYKQIR---- ---------- ANKDRFGLI- BACU006150/1-431 RKAIAAEDPS LDFRNNPNKE DLGKLQPLVA SYLCSDVTSV PSKESLKLQG ENSTTRP00000008691/1-1099 RKAIAAEDPS LDFRNNPNKE DLGKLQPLVA SYLCSDVTSV PSKESLKLQG 101 150 ENSBTAP00000034638/1-1103 VFSKQTVLKS HPLLSQSYEL RAELLGRQPV LEFSLENLRT MNTSGQTALP bmy_10254T0/1-881 ---------- ---------- ---VLGEAPP PEHTTDLFLP LS-------- BACU006150/1-431 VFSKQTVLKS HPLLSQSYEL RAELLGRQPV LEFSLENLRT MNTSGQTALP ENSTTRP00000008691/1-1099 VFSKQTVLKS HPLLSQSYEL RAELLGRQPV LEFSLENLRT MNTSGQTALP 151 200 ENSBTAP00000034638/1-1103 QAPVNGLAKK LTKSSTHSDH DNSSPLNGGK RALTSSSLQG --GEVVASES bmy_10254T0/1-881 ---------- ---SEVKTDH GNDKLIESVS QPLENHGASG HPSESLSTKS BACU006150/1-431 QAPVNGLAKK LTKSSTHSDH DNSSPLNGGK RALTSSSLQG --GEVVASES ENSTTRP00000008691/1-1099 QAPVNGLAKK LTKSSTHSDH DNSSPLNGGK RALTSSSLQG --GEVVASES 201 250 ENSBTAP00000034638/1-1103 -GDLK--GGM TNCTLPHRSL DVEHTTVFSN NSTANKSSVN SMEQ-PALQG bmy_10254T0/1-881 CGALRPVNGV INTLQP---- ------VLAD HIPGDNSDAE -----EQLHK BACU006150/1-431 -GDLK--GGM TNCTLPHRSL DVEHTTIFSN NSTANKSSVN SMEQPPALQG ENSTTRP00000008691/1-1099 -GDLK--GGM TNCTLPHRSL DVEHTTIFSN NSTANKSSVN SMEQPPALQG 251 300 ENSBTAP00000034638/1-1103 SNRLSPDTDS SSNVGGVKLE GKKPPLSSIL FSALDSDTRI TALLRRQADI bmy_10254T0/1-881 KQRLNL---V SSSTDGTCVA ARTRPVLSCK KRRLVRPNSI VPLSKKVSTI BACU006150/1-431 SSRLSPDTDS SSNLGGVKLE GKKSPLSSIL FSALDSDTRI SALLRRQADI ENSTTRP00000008691/1-1099 SSRLSPDTDS SSNLGGVKLE GKKSPLSSIL FSALDSDTRI TALLRRQADI 301 350 ENSBTAP00000034638/1-1103 ESRARRLQKR LQVVQAKQVE RHIQHQLGGF LEKTLSKLPN LESLRPRSQL bmy_10254T0/1-881 EELILGKQRK -QYITVKYKK VVFGHALDAF NKNKQKPTNN IASWG-NSVL BACU006150/1-431 ESRARRLQKR LQVVQAKQVE RHIQHQLGGF LEKTLSKLPN LESLRPRSQL ENSTTRP00000008691/1-1099 ESRARRLQKR LQVVQAKQVE RHIQHQLGGF LEKTLSKLPN LESLKPRSQL 351 400 ENSBTAP00000034638/1-1103 MLTRKAEAAL RKAASETAAS EG-LSNFLKS DSISEELERF TASGIANLRC bmy_10254T0/1-881 SLFQQF---- --ASHGVMTS KGWLSVISKQ FDTSLYTYSF SLSGFT-FRT BACU006150/1-431 MLTRKAEAAL RKAASETATS EG-LSNFLKS DSISEELDRF TASGIANLRC ENSTTRP00000008691/1-1099 MLTRKAEAAL RKAASETATS EG-LSNFLKS DSISEELDRF TASGIANLRC 401 450 ENSBTAP00000034638/1-1103 SERAFDSDIT DSSSGGESDI EEEELARADP EQRHVPLRRR SEWRWAADRA bmy_10254T0/1-881 VLRNNWSYIK DSGF------ ---------- -PKFVPL--- ---------- BACU006150/1-431 SERAFDSDVT DSSSGGESDI EEEELTRADP EQRHLPL--- ---------- ENSTTRP00000008691/1-1099 SERAFDSDVT DSSSGGESDI EEEELTRADP EQRHLPLRRR SEWRWAADRA 451 500 ENSBTAP00000034638/1-1103 AIVSRWNWLQ AHVSDLEYRI RQQTDIYKQI RANKGLIVLG EAPPPEHTTT bmy_10254T0/1-881 ---------- ----AISFLL YIQSIKWNAV HCPLGELV-- ---------- BACU006150/1-431 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008691/1-1099 AIVSRWNWLQ AHVSDLEYRI RQQTDIYKQI RANKGLIVLG EAPPPEH-TT 501 550 ENSBTAP00000034638/1-1103 DLLLPLSSEV KTDHGNDKLI ESVSQPLENH GASGHPSESL SAKSCGALRP bmy_10254T0/1-881 ---------- ------DVMV FKVLVPFLDS NFLNPPIHLL RSLWFLSLPT BACU006150/1-431 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008691/1-1099 DLFLPLSSEV KTDHGNDKLI ESVSQPLENH GASGHPSESL STKSCGALRP 551 600 ENSBTAP00000034638/1-1103 VNGVINTLQP VLADHIPGDN SDAEEQLHKK QRLNLVASST DGTCVAARTR bmy_10254T0/1-881 PPGSL----- ----FIAGDA KRTGE----- ---------- ---------- BACU006150/1-431 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008691/1-1099 VNGVINTLQP VLADHIPGDN SDAEEQLHKK QRLNLVSSST DGTCVAARTR 601 650 ENSBTAP00000034638/1-1103 PVLSCKKRRL VRPSSIVPLS KKVHRNSTVR SGCDVNPSCA LCGSGSASTM bmy_10254T0/1-881 ---------- ---------- --VHRNSTVR SGCDVNPSCA LCGSGSASST BACU006150/1-431 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008691/1-1099 PVLSCKKRRL VRPNSIVPLS KKVHRNSTVR SGCDVNPSCA LCGSGSASTT 651 700 ENSBTAP00000034638/1-1103 PPEIHYEAPL LERLSQLDSC VHPVLAFPDD VPTGLHFQSM LKSQWQNKPF bmy_10254T0/1-881 PPEIHYEAPL LERLSQLDSC VHPVLAFPDD VPTSLHFQSM LKSQWQNKPF BACU006150/1-431 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008691/1-1099 PPEIHYEAPL LERLSQLDSC VHPVLAFPDD VPTSLHFQSM LKSQWQNKPF 701 750 ENSBTAP00000034638/1-1103 DKIKPPKKFS LKHRAPMPGS LPDPTRKDRH KLVNSFLTTA KLSHHQARPD bmy_10254T0/1-881 DKIKPPKKFS LKHRAPMPGS LPDPTRKDRH KLVNSFLTTA KLSHHQTRPD BACU006150/1-431 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008691/1-1099 DKIKPPKKFS LKHRAPMPGS LPDPTRKDRH KLVNSFLTTA KLSHHQTRPD 751 800 ENSBTAP00000034638/1-1103 RTHRQHLDDV GAVPMVERVT APKAERLLSP PPPVHDPNHS KMRLRDHSSE bmy_10254T0/1-881 RTHRQHLDDV GAVPMVERVT APKAERSLNP PPPVHDPNHS KMRLRDHSSE BACU006150/1-431 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008691/1-1099 RTHRQHLDDV GAVPMVERVT APKAERSLNP PPPVHDPNHS KMRLRDHSSE 801 850 ENSBTAP00000034638/1-1103 RSEVLKHHTD MSGSSYLAAT HHPPHSPLVR QLSASSDTSA PTSSSPQVTA bmy_10254T0/1-881 RSEVLKHHTD LSSSSYLAAT QHPPHSPLVR QLSASSDTSA PTSSSPQVTA BACU006150/1-431 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008691/1-1099 RSEVLKHHTD LSSSSYLAAT HHPPHSPLVR QLSASSDTSA PTSSSPQVTA 851 900 ENSBTAP00000034638/1-1103 STT-QPVRRR RGESSFDINN IVIPMSVAAT TRVEKLQYKE ILTPSWREVD bmy_10254T0/1-881 STS-QPVRRR RGESSFDINN IVIPMSVAAT TRVEKLQYKE ILTPSWREVD BACU006150/1-431 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008691/1-1099 STSQQPVRRR RGESSFDINN IVIPMSVAAT TRVEKLQYKE ILTPSWREVD 901 950 ENSBTAP00000034638/1-1103 LRSLKGSPDE ENEEIEDLSD AAFAALHAKC EEMERARWLW TTSVPPQRRG bmy_10254T0/1-881 LRSLKGSPDE ENEEIEDLSD AAFAALHAKC EEMERARWLW TTSVPPQRRG BACU006150/1-431 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008691/1-1099 LRSLKGSPDE ENEEIEDLSD ---AAAHAKC EEMERARWLW TTSV--QRRG 951 1000 ENSBTAP00000034638/1-1103 S--------- -RSYRSSDGR TTPQLGSANP STPQPASPDV SSSHSLSEFS bmy_10254T0/1-881 SRHSDLRFLV YRSYRSSDGR TTPQLGSANP STPQPASPDV SSSHSLSEFS BACU006150/1-431 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008691/1-1099 S--------- -RSYRSSDGR TTPQLGSANP STPQPASPDV SSSHSLSEFS 1001 1050 ENSBTAP00000034638/1-1103 HGQSPRSPIS PELHSAPLTP VARDTLRHLA SEDTRCSTPE LGLDEQSVQP bmy_10254T0/1-881 HGQSPRSPIS PELHSAPLTP VARDTLRHLA SEDTRCSTPE LGLDEQSVQP BACU006150/1-431 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008691/1-1099 HGQSPRSPIS PELHSAPLTP VARDTLRHLA SEDTRCSTPE LGLDEQSVQP 1051 1100 ENSBTAP00000034638/1-1103 WERRTFPLAY SPQAESEDQL DAQERASRCT RRTSGSKTGR ETEVAPTSPP bmy_10254T0/1-881 WERRTFPLAY SPQAESEDQL DAQERASRCT RRTSGSKTGR EAEAAPTSPP BACU006150/1-431 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008691/1-1099 WERRTFPLAY SPQAESEDQL DAQERASRCT RRTSGSKTGR ETEVAPTSPP 1101 1150 ENSBTAP00000034638/1-1103 VVPLKSRHLT ATVTAQRPTH R bmy_10254T0/1-881 VIPLKSRHLA AAVTAQRPAH R BACU006150/1-431 ---------- ---------- - ENSTTRP00000008691/1-1099 IIPLKSRHLA ATVTAQRPTH R