KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:44:42 2014 Check: 00 .. Name: ENSP00000261844/1-1076 Len: 1122 Check: 574 Weight: 1.00 Name: ENSBTAP00000034680/1-1082 Len: 1122 Check: 214 Weight: 1.00 Name: ENSTTRP00000004533/1-1068 Len: 1122 Check: 1843 Weight: 1.00 Name: bmy_18483T0/1-1118 Len: 1122 Check: 2493 Weight: 1.00 Name: BACU016373/1-1089 Len: 1122 Check: 9687 Weight: 1.00 // 1 50 ENSP00000261844/1-1076 MKPDRDTLDE YFEYDAEEFL VSLALLITEG RTPECSVKGR TESFHCPPAQ ENSBTAP00000034680/1-1082 -----DTLDE YFEYDAEEFL VSLALLITEG RTPECSVKGR TESFHCPPAQ ENSTTRP00000004533/1-1068 ----PDSLDE YFEYDAEEFL VSLALLITEG RTPECSVKGR TESFHCPPAQ bmy_18483T0/1-1118 ---IPDSLDE YFEYDAEEFL VSLALLITEG RTPECSVKGR TESFHCPPAQ BACU016373/1-1089 MKPDRDSLDE YFEYDAEEFL VSLALLITEG RTPECSVKGR TESFHCPPAQ 51 100 ENSP00000261844/1-1076 SCYPVTTKHE CSDKLAQCRQ ARRTRSEVTL LWKNNLPIMV EMMLLPDCCY ENSBTAP00000034680/1-1082 SCYPITTKHE CSDKLAQCRQ ARRTRSEVAL LWKNNLPIMV EVMLLPDCCY ENSTTRP00000004533/1-1068 SCYPVTSKHE CSDKLAQCRQ ARRTMSEVAL LWK-NLPIMV EVMLLPDCCY bmy_18483T0/1-1118 SCYPVTSKHE CSDKLAQCRQ ARRTRSEVAL LWKNNLPIMV EVMLLPDCCY BACU016373/1-1089 SCYPVTSKHE CSDKLAQCRQ ARRTRSEVAL LWKNNLPIMV EVMLLPDCCY 101 150 ENSP00000261844/1-1076 SDDGPTTEGI DLNDPAIKQD ALLLERWILE PVPRQNGDRF IEEKTLLLAV ENSBTAP00000034680/1-1082 SDDGPTTEGI DLNDPAIKQD ALLLERWILE PVPRQSGDRF IEEKTLLLAV ENSTTRP00000004533/1-1068 SDDGPTTE-I DLNDP-IRQD ALL--RWILE --PRQSGDRF IEEKTLLLAV bmy_18483T0/1-1118 SDDGPTTEGI DLNDPAIKQD ALLLERWILE PVPRQSGDRF IEEKTLLLAV BACU016373/1-1089 SDDGPTTEGI DLNDPAIKQD ALLLERWILE PVPRQSGDRF IEEKTLLLAV 151 200 ENSP00000261844/1-1076 RSFVFFSQLS AWLSVSHGAI PRNILYRISA ADVDLQWNFS QTPIEHVFPV ENSBTAP00000034680/1-1082 RSFVFFSQLS AWLSVSHGAT PRNILYRISA ADVDLQWNFS QTPIEHVFPV ENSTTRP00000004533/1-1068 RSFVFFSQLS AWLSVSHGAI PRNIIYRISA ADVDLQWNFS QTPIEHVFPV bmy_18483T0/1-1118 RSFVFFSQLS AWLSVSHGAI PRNILYRISA ADVDLQWNFS QTPIEHVFPV BACU016373/1-1089 RSFVFFSQLS AWLSVSHGAI PRNILYRISA ADVDLQWNFS QTPIEHVFPV 201 250 ENSP00000261844/1-1076 PNVSHNVALK VSVQSLPRQS NYPVLTCSIH TNIGLYEKRI QQHKLKTHQH ENSBTAP00000034680/1-1082 PNVSHNVALK VSVQSLPRQS NYPVLTCSIH TNIGLYEKRI QEHELKTHQH ENSTTRP00000004533/1-1068 PNVSHNVALK VSVQSLPRQS NYPVLTCSIH TNIGLFEKRV QDHELKTHQH bmy_18483T0/1-1118 PNVSHNVALK VSVQSLPRQS NYPVLTCSIH TNIGLYEKRV QDHELKTHQH BACU016373/1-1089 PNVSHNVALK VSVQSLPRQS NYPVLTCSIH TNIGLYEKRV QDHELKTHQH 251 300 ENSP00000261844/1-1076 HNPNEAEQCG TNSSQRLCSK QTWTMAPES- VLHAKSGPSP EYTAAVKNIK ENSBTAP00000034680/1-1082 RNSTEADHCS TDSSQRVCSK QTWTMAPESI ILHAKNGTTP EYSAAVKNVK ENSTTRP00000004533/1-1068 RNSTEAEQCS TNSSQRLCSK QTWTMAPESI ILHAKNGTTP EYTATVKNVK bmy_18483T0/1-1118 RNSTEAEQCS TNGSQRLCSK QTWTMAPESI ILHAKNGTTP EYTAAVKNVK BACU016373/1-1089 RNSTEAEQCS TNGSQRLCSK QTWTMAPESI ILHAKNGTTP EYTAAVKNVK 301 350 ENSP00000261844/1-1076 LYPGTGSKSD HGTSQANILG FSGIGDIKSQ ETSVRTLKSF SMVDSSISNR ENSBTAP00000034680/1-1082 LYPGIGSKSD YGTSQGNILG FSNIGEKKSH ETSVRTLKSF SVVDSSDSSH ENSTTRP00000004533/1-1068 LYPGTSGKSD YGTSQGNILG FSGIGDKKSH ETSVRTLKSF SVIDSSESSR bmy_18483T0/1-1118 LYPGTSGKSD YGTSQGNILG FSGIGDKKSH ETSVRTLKSF SVIDSSESSH BACU016373/1-1089 LYPGTSGKSD YGTSQGNILG FSGIGDKKSH ETSVRTLKSF SVIDSSESSH 351 400 ENSP00000261844/1-1076 QSFWQSAGET NPLIGSLIQE RQEIIARIAQ HLIHCDPSTS HVSGRPFNTQ ENSBTAP00000034680/1-1082 QSSWQSVGET NPLIGSLIQE RQEVIARIAQ HLIHCDPSTS HVSEHPLNMQ ENSTTRP00000004533/1-1068 QSSWQSVGET NPLIGSLIQE RQEVIARIAQ HLIHCDPSTS HVSGHPLNTQ bmy_18483T0/1-1118 QSSWQSVGET NPLIGSLIQE RQEVIARIAQ HLIHCDPSTS HVSGHPLNTQ BACU016373/1-1089 QSSWQSVGET NPLIGSLIQE RQEVIARIAQ HLIHCDPSTS HVSGHPLNTQ 401 450 ENSP00000261844/1-1076 ESSSLHSKLF RVSQENENVG KGKEAFSMTF GSPEFSSPED TNEGKIRLKP ENSBTAP00000034680/1-1082 ESSSLNSKLF RVSQENESVR RCKETFSVSF GSPELTSSED TSEGKIRVKP ENSTTRP00000004533/1-1068 ESSSLNSKLF RVSQENENVR KCKETFSISF GNPALTSSED TNEGKIRVKP bmy_18483T0/1-1118 ESSSLNSKLF RVSRENENVR KCKETFSISF GNPELTSSED TNEGKIRVKP BACU016373/1-1089 ESSSRNSKHF RVSRENENVR KCKETFSISF GNPELTSSED TNEGKIRVKP 451 500 ENSP00000261844/1-1076 ETPRSETCIS NDFYSHMPVG ETNPLIGSLL QERQDVIARI AQHLEHIDPT ENSBTAP00000034680/1-1082 ETPRNGTYIS NGLHSRQSVG ETNPLISSLL QERQDIIARI AQHLEHIDPM ENSTTRP00000004533/1-1068 ETPRSDTCIS NGLHSDQSVG EINPLISSLL QERQDVIARI AQHLEHIDPT bmy_18483T0/1-1118 ETPRSETCIS NGLHSHQSVG EINPLISSLL QERQDVIARI AQHLEHIDPT BACU016373/1-1089 ETPRSETCIS NGLHSHQSVG EINPLISSLL QERQDVIARI AQHLEHIDPT 501 550 ENSP00000261844/1-1076 ASHIPRQSFN MHDSSSVASK VFRSSYEDKN LLKKNKDESS VSISHTKCSL ENSBTAP00000034680/1-1082 ASHMPRQSFN MQDSSSVPSK VFRSSYEDKN LLKKNKDDTS VSISNTKFSL ENSTTRP00000004533/1-1068 APHMPRQSFN IQDSSSVPSK VFRSSYEDRN LLKKNKDDTS VSISDTKFSL bmy_18483T0/1-1118 APHMPRQSFN MQDSSSVPSK LFRSSYEDRN LLKKNKDDTS VSTSDTKFSL BACU016373/1-1089 APHMPRQSFN MQDSSSVPSK LFRSSYEDRN LLKKNKDDTS VSISDTKFSL 551 600 ENSP00000261844/1-1076 LGDISDGKNL VPNKCFTSFK NNSKEKCSLK HQT-RNQCQN NPSEIIQSTY ENSBTAP00000034680/1-1082 LDDISEGKNS ISNKYFSSFN CNSKVKPSLQ PQIRRNLYKD NPSE-IQGTF ENSTTRP00000004533/1-1068 LDNISEGKHL TPNKRFSSFK CNSNVKPSLK PQTRRNLHQN NPSE-IQSTF bmy_18483T0/1-1118 LDNISEGKNL TPNKYFSSFK CNSNVKPSLK PQTRRNLHQN NPSE-IQSTF BACU016373/1-1089 LDNISEGKNL TPNKYFSSSK CNSNVKPSLK PQTRRNLHQN NPSE-IQSTF 601 650 ENSP00000261844/1-1076 QETQNKSSSL STSSILSQHK ENNLDLTSR- --------FK EQEMSNGIDK ENSBTAP00000034680/1-1082 QQTQNKATGL TTPSNISHCK ENNFDLTIRL ENTCSECQFK KQEINNEIDK ENSTTRP00000004533/1-1068 QETQNKATGL MNPSNMSLCK EDNLDFTIR- --------FK EKEIDNEINK bmy_18483T0/1-1118 QETQNKATGL MNPSNMSHCK EDNLDFTIRL ENTLSECQFK EQEIDNEINK BACU016373/1-1089 QETQNKATGL MNPSNMSHCK EDNLDFTIRL ENTLSECRFK EQEIDDEINK 651 700 ENSP00000261844/1-1076 QYSNCTTIDK QICTNKYKEK II-NENYNPK FFGNLQSDDS KKNDSKIKVT ENSBTAP00000034680/1-1082 EYSNCNSIDK QVCTNKYKDK II-NENYNPE SFINHQCDNS KKNDSKVKVT ENSTTRP00000004533/1-1068 QYSKCNSIDK QICTNKYKDK IIINENYNPE SFNNHQFDHS KKNDSKINVT bmy_18483T0/1-1118 QYSKCNSIDK QICTNKYKDK IIKNENYNPE SFNNHQFDHS KKNDLKINVT BACU016373/1-1089 QYSKCNSIDK QICTNKYKDK IIINENYNPE SFNNHQFDHS KKNDSKINVT 701 750 ENSP00000261844/1-1076 VLEMSEYLNK YESMSSNKDS KRPKTCEQNT QLNSIENYLN KDNEGFKCKK ENSBTAP00000034680/1-1082 VLEMSGYLSK HENECSNKDP KRPKPCEQNT QLNSIENYLI KDSEGFKCKK ENSTTRP00000004533/1-1068 VLEMSGYLNK HANECSDKDS KKPKSCEQNT QLNSIENYLN KDSEGFKCKK bmy_18483T0/1-1118 VLEMSGYLNK HANECSDKDS KKPKSCEQNT QLNSIENYLN KDSEVFKCKK BACU016373/1-1089 VLEMSGYLNK HANECSDKDS KKPKSCEQNT QLNSIENYLN KDSEVFKSKK 751 800 ENSP00000261844/1-1076 SDQLKNEQDK QEDPTNEKSQ NYSQRRSIKD CLSTCEQPKN TEVL-RTT-L ENSBTAP00000034680/1-1082 LDQLRNEQDK KEDPIDENSQ NCSQRKNIKD CLSTCERLKN KEVL-RTIPL ENSTTRP00000004533/1-1068 PNQLNSEQDK KEDPVDEKSQ NCSQRKNIKD CLFTCERLKD KEVL-RTIPL bmy_18483T0/1-1118 PNHLKNEQDK KEDPVDEKSQ NCSQRKNIKD CLFTCERLKN KEVLQRTIPL BACU016373/1-1089 PNHLKNEQNK KEDPVDEKSQ NCSQRKNIKD CLFTCERLKN KEVLQRTIPL 801 850 ENSP00000261844/1-1076 KHSNVWRKHN FHSLDGTSTR AFHPQTGLPL LSSPVPQRKT QSGCFDLDSS ENSBTAP00000034680/1-1082 RHSSVWQKHN FHSLDGTSTR AFHPRTGLPL LSSPVPQRKA QSGCFDLDSS ENSTTRP00000004533/1-1068 KHSSVWRKHN FHSLDGTSTR AFHPRTGLPL LSSPVPQRKA QSGCFNLDSS bmy_18483T0/1-1118 KQSSVWQKHN FHSLDGTSTR AFHPRTGLPL LSSPVPQRKA QSGCFNLDSS BACU016373/1-1089 KQSSVWQKHN FHSLDGTSTR AFHPRTGLPL LSSPVPQRKA QSGCFNLDSS 851 900 ENSP00000261844/1-1076 LLHLKSFSSR SPRPCLNIED DPDIHEKPFL SSSAPPITSL SLLGNFEESV ENSBTAP00000034680/1-1082 FLHLKSLSSR SPQPCLNIED DPDIHEKPLL SSSAPPVTSL SLLGNFEESV ENSTTRP00000004533/1-1068 LLHLKSLSSR SPRPCLNIED DPDIHEKPFL SSSAPPITSL SLLGNFEESV bmy_18483T0/1-1118 LLHLKSLSSR SPRPCLNIED DPDIHEKPFL SSSAPPITSL SLLGNFEESV BACU016373/1-1089 LLHLKSLSSR SPRPCLNIED DPDIQEKPFL SSSAPPITSL SLLGNFEESV 901 950 ENSP00000261844/1-1076 LNYRFDPLGI VDGFTAEVGA SGAFCPTHLT LPVEVSFYSV SDDNAPSPYM ENSBTAP00000034680/1-1082 LNYRLDPLGI VDGFTAEVGA SGVFCPTHLT LPVEVSFYSV SEDNAPSPYM ENSTTRP00000004533/1-1068 LNYRLDPLGI VDGFTAEVGA SGVFCPTHLT LPVEVSFYSV SDDNAPSPYM bmy_18483T0/1-1118 LNYRLDPLGI VDGFTAEVGA SGVFCPTHLT LPVEVSFYSV SDDNAPSPYM BACU016373/1-1089 LNYRLDPLGI VDGFTAEVGA SGVFCPTHLT LPVEVSFYSV SDDNAPSPYM 951 1000 ENSP00000261844/1-1076 ---------- --------GV ITLESLGKRG YRVPPSGTIQ V--------- ENSBTAP00000034680/1-1082 ---------- --------GV ITLESLGKRG YRVPPSGTIQ V--------- ENSTTRP00000004533/1-1068 ---------- --------GV ITLESLGKRG YRVPPSGTIQ V--------- bmy_18483T0/1-1118 ARRRGALYTI AFFHVEKIGV ITLESLGKRG YRVPPSGTIQ VNLALSPATA BACU016373/1-1089 ---------- --------GV ITLESLGKRG YRVPPSGTIQ V--------- 1001 1050 ENSP00000261844/1-1076 -----TLFNP NKTVVKMFVV IYDLRDMPAN HQTFLRQRTF SVPVKQEVKR ENSBTAP00000034680/1-1082 -----TLFNP NKTVVKMFVV IYDLRDMPAN HQTFLRQRTF SVPVKQEMKR ENSTTRP00000004533/1-1068 -----TLFNP NKTVVKMFVV IYDLRDMPAN HQTFLRQRTF SVPVKQEMKR bmy_18483T0/1-1118 AATTLTLFNP NKTVVKMFVV IYDLRDMPAN HQTFLRQRTF SVPVKQEMKR BACU016373/1-1089 -----TLFNP NKTVVKMFVV IYDLRDMPAN HQTFLRQRTF SVPVKQEMKR 1051 1100 ENSP00000261844/1-1076 SVNKENIRHT EERLLRYLIH LRFQSSKSGK IYLHRDVRLL FSRKSMEVDS ENSBTAP00000034680/1-1082 SVNKENIRHT EERLLRYLIH LRFQSSKSGK IYLHRDVRLL FSRKSMEVDS ENSTTRP00000004533/1-1068 SVNKENIRHT EERLLRYLIH LRFQSSKSGK IYLHRDVRLL FSRKSMEVDS bmy_18483T0/1-1118 SVNKENIRHT EERLLRYLIH LRFQSSKSGK IYLHRDVRLL FSRKSMEVDS BACU016373/1-1089 SVNKENIRHT EERLLRYLIH LRFQSSKSGK IYLHRDVRLL FSRKSMEVDS 1101 1150 ENSP00000261844/1-1076 GAAYELKSYT ESPTNPQFSP RC ENSBTAP00000034680/1-1082 GAAYELKSYT ESPTNPQFSP RC ENSTTRP00000004533/1-1068 GAAYELKSYT ESPTNPQFSP RC bmy_18483T0/1-1118 GAAYELKSYT ESPTNPQFSP RC BACU016373/1-1089 GAAYELKSYT ESPTNPQFSP RC