KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:44:44 2014 Check: 00 .. Name: ENSP00000302640/1-764 Len: 919 Check: 540 Weight: 1.00 Name: ENSBTAP00000034691/1-757 Len: 919 Check: 8771 Weight: 1.00 Name: ENSTTRP00000009965/1-757 Len: 919 Check: 90 Weight: 1.00 Name: bmy_15225T0/1-912 Len: 919 Check: 1312 Weight: 1.00 Name: BACU008432/1-720 Len: 919 Check: 9937 Weight: 1.00 // 1 50 ENSP00000302640/1-764 MNGEADCPTD LEMAAPKGQD RWSQEDMLTL LECMKNNLPS NDSSKFKTTE ENSBTAP00000034691/1-757 MNGEADCPTD LEMAAPKGQD RWSQEDMLTL LECMKNNIPS NDSSKFKTTE ENSTTRP00000009965/1-757 MNGEADCPTD LEMAAPKGQD RWSQEDMLTL LECMKNNLPS NDSSKFKTTE bmy_15225T0/1-912 MNGEADCPTD LEMAAPKGQD RWSQEDMLTL LECMKNNLPS NDSSKFKTTE BACU008432/1-720 MNGEADCPTD LEMAAPKGQD RWSQEDMLTL LECMKNNLPS NDSSKFKTTE 51 100 ENSP00000302640/1-764 SHMDWEKVAF KDFSGDMCKL KWVEISNEVR KFRTLTELIL DAQEHVKNPY ENSBTAP00000034691/1-757 SHMDWEKVAF KDFSGDMCKL KWVEISNEVR KFRTLTELIL DAQEHVKNPY ENSTTRP00000009965/1-757 SHMDWEKVAF KDFSGDMCKL KWVEISNEVR KFRTLTELIL DAQEHVKNPY bmy_15225T0/1-912 SHMDWEKVAF KDFSGDMCKL KWVEISNEVR KFRTLTELIL DAQEHVKNPY BACU008432/1-720 SHMDWEKVAF KDFSGDMCKL KWVEISNEVR KFRTLTELIL DAQEHVKNPY 101 150 ENSP00000302640/1-764 KGKKLKKHPD FPKKPLTPYF RFFMEKRAKY AKLHPEMSNL DLTKILSKKY ENSBTAP00000034691/1-757 KGKKLKKHPD FPKKPLTPYF RFFMEKRAKY AKLHPEMSNL DLTKILSKKY ENSTTRP00000009965/1-757 KGKKLKKHPD FPKKPLTPYF RFFMEKRAKY AKLHPEMSNL DLTKILSKKY bmy_15225T0/1-912 KGKKLKKHPD FPKKPLTPYF RFFMEKRAKY AKLHPEMSNL DLTKILSKKY BACU008432/1-720 KGKKLKKHPD FPKKPLTPYF RFFMEKRAKY AKLHPEMSNL DLTKILSKKY 151 200 ENSP00000302640/1-764 KELPEKKKMK YIQDFQREKQ EFERNLARFR EDHPDLIQNA KKSDIPEKPK ENSBTAP00000034691/1-757 KELPEKKKMK YIQDFQREKQ EFERNLARFR EDHPDLIQNA KKSDIPEKPK ENSTTRP00000009965/1-757 KELPEKKKMK YIQDFQREKQ EFERNLARFR EDHPDLIQNA KKSDIPEKPK bmy_15225T0/1-912 KELPEKKKMK YIQDFQREKQ EFERNLARFR EDHPDLIQNA KKSDIPEKPK BACU008432/1-720 KELPEKKKMK YIQDFQREKQ EFERNLARFR EDHPDLIQNA KKSDIPEKPK 201 250 ENSP00000302640/1-764 TPQQLWYTHE KKVYLKVRPD ATTKEVKDSL GKQWSQLSDK KRLKWIHKAL ENSBTAP00000034691/1-757 TPQQLWYTHE KKVYLKVRPD ATTKEVKDSL GKQWSQLSDK KRLKWIHKAL ENSTTRP00000009965/1-757 TPQQLWYTHE KKVYLKVRPD ATTKEVKDSL GKQWSQLSDK KRLKWIHKAL bmy_15225T0/1-912 TPQQLWYTHE KKVYLKVRPD ATTKEVKDSL GKQWSQLSDK KRLKWIHKAL BACU008432/1-720 TPQQLWYTHE KKVYLKVRPD ---------- ---------- ---------- 251 300 ENSP00000302640/1-764 EQRKEYEEIM RDYIQKHPEL NISEEGITKS TLTKAERQLK DKFDGRPTKP ENSBTAP00000034691/1-757 EQRKEYEEIM RDYIQKHPEL NISEEGITKS TLTKAERQLK DKFDGRPTKP ENSTTRP00000009965/1-757 EQRKEYEEIM RDYIQKHPEL NISEEGITKS TLTKAERQLK DKFDGRPTKP bmy_15225T0/1-912 EQRKEYEEIM RDYIQKHPEL NISEEGITKS TLTKAERQLK DKFDGRPTKP BACU008432/1-720 -------EIM RDYIQKHPEL NISEEGITKS TLTKAERQLK DKFDGRPTKP 301 350 ENSP00000302640/1-764 PPNSYSLYCA ELMANMKDVP STERMVLCSQ QWKLLSQKEK DAYHKKCDQK ENSBTAP00000034691/1-757 PPNSYSLYCA ELMANMKDVP STERMVLCSQ QWKLLSQKEK DAYHKKCDQK ENSTTRP00000009965/1-757 PPNSYSLYCA ELMANMKDVP STERMVLCSQ QWKLLSQKEK DAYHKKCDQK bmy_15225T0/1-912 PPNSYSLYCA ELMANMKDVP STERMVLCSQ QWKLLSQKEK DAYHKKCDQK BACU008432/1-720 PPNSYSLYCA ELMANMKDVP STERMVLCSQ QWKLLSQKEK DAYHKKCDQK 351 400 ENSP00000302640/1-764 KKDYEVELLR FLESLPEEEQ QRVLGEEKML NINKKQATSP ASKKPAQEGG ENSBTAP00000034691/1-757 KKDYEVDLLR FLESLPEEEQ QRVLGEEKML NINKKQATSP ASKKPSQEAG ENSTTRP00000009965/1-757 KKDYEVELLR FLESLPEEEQ QRVLGEEKML NINKKQATSP ASKKPSQEGG bmy_15225T0/1-912 KKDYEVELLR FLESLPEEEQ QRVLGEEKML NINKKQATSP ASKKPSQEGG BACU008432/1-720 KKDYEVELLR FLESLPEEEQ QRVLGEEKML NINKKQATSP ASKKPSQEGG 401 450 ENSP00000302640/1-764 KGGSEKPKRP VSAMFIFSEE KRRQLQEERP ELSESELTRL LARMWNDLSE ENSBTAP00000034691/1-757 KGGSEKPKRP VSAMFIFSEE KRRQLQEERP ELSESELTRL LARMWNDLSE ENSTTRP00000009965/1-757 KGGSEKPKRP VSAMFIFSEE KRRQLQEERP ELSESELTRL LARMWNDLSE bmy_15225T0/1-912 KGGSEKPKRP VSAMFIFSEE KRRQLQEERP ELSESELTRL LARMWNDLSE BACU008432/1-720 KGGSEKPKRP VSAMFIFSEE KRRQLQEERP ELSESELTRL LARMWNDLSE 451 500 ENSP00000302640/1-764 KKK------- ---------- ---------- ---------- ---------- ENSBTAP00000034691/1-757 KKK------- ---------- ---------- ---------- ---------- ENSTTRP00000009965/1-757 KKK------- ---------- ---------- ---------- ---------- bmy_15225T0/1-912 KKKVRLARPE GLPGRVWAAS PLGASCTSSP CPRCVWGVSR RGAWAQMVGL BACU008432/1-720 KKK------- ---------- ---------- ---------- ---------- 501 550 ENSP00000302640/1-764 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000034691/1-757 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009965/1-757 ---------- ---------- ---------- ---------- ---------- bmy_15225T0/1-912 GTQRAGRREA VSWGLGAPWG AGPLGSLSPW QETSAPAHAS AHPTLAGGGE BACU008432/1-720 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000302640/1-764 ---------- ---------- ------AKYK AREAALKAQS ERKPGGEREE ENSBTAP00000034691/1-757 ---------- ---------- ------AKYK AREAALKAQS ERKP------ ENSTTRP00000009965/1-757 ---------- ---------- ------AKYK AREAALKAQS ERKP------ bmy_15225T0/1-912 SLQLLDEPRA PPGGGRKADT SAAPPQAKYK AREAALKAQS ERKP------ BACU008432/1-720 ---------- ---------- ------AKYK AREAALKAQS ERKP------ 601 650 ENSP00000302640/1-764 RGKLPESPKR AEEIWQQSVI GDYLARFKND RVKALKAMEM TWNNMEKKEK ENSBTAP00000034691/1-757 -GKLPESPKR AEEIWQQSVI GDYLARFKND REKALKAMEM TWNNMEKKEK ENSTTRP00000009965/1-757 -GKLPESPKR AEEIWQQSVI GDYLARFKND REKALKAMEM TWNNMEKKEK bmy_15225T0/1-912 -GKLPESPKR AEEIWQQSVI GDYLARFKND REKALKAMEM TWNNMEKKEK BACU008432/1-720 -GKLPESPKR AEEIWQQSVI GDYLARFKND REKALKAMEM TWNNMEKKEK 651 700 ENSP00000302640/1-764 LMWIKKAAED QKRYERELSE MRAPPAATNS SKKMKFQGEP KKPPMNGYQK ENSBTAP00000034691/1-757 LMWIKKAAED QKRYERELSE RRAPPAAANS SKKMKFQGEP KKPPMNGYQK ENSTTRP00000009965/1-757 LMWIKKAAED QKRYERELSE RRAPPAAANS SKKMKFQGEP KKPPMNGYQK bmy_15225T0/1-912 LMWIKKAAED QKRYERELSE RRAPPAAANS SKKMKFQGEP KKPPMNGYQK BACU008432/1-720 LMWIKKAAED QKRYERELSE RRAPPAAANS SKKMKFQGEP KKPPMNGYQK 701 750 ENSP00000302640/1-764 FSQELLSNGE LNHLPLKERM VEIGSRWQRI SQSQKEHYKK LAEEQQKQYK ENSBTAP00000034691/1-757 FSQELLSNGQ LNHLPLKERM VEIGSRWHRI SQSQKEHYKK QAEEQQKQYK ENSTTRP00000009965/1-757 FSQELLSNGQ LNHLPLKERM VEIGSRWQRI SQSQKEHYKK QAEEQQKQYK bmy_15225T0/1-912 FSQELLSNGQ LNHLPLKERM VEIGSRWQRI SQSQKEHYKK QAEEQQKQYK BACU008432/1-720 FSQELLSNGQ LNHLPLKERM VEIGSRWQRI SQSQKEHYKK QAEEQQKQYK 751 800 ENSP00000302640/1-764 VHLDLWVKSL SPQDRAAYKE YISNKRKSMT KLRGPNPKSS RTTLQSKS-- ENSBTAP00000034691/1-757 VNLDLWVKSL SPQERAAYKE YISNKRKNMT KLRGPNPKSS RTALQSKS-- ENSTTRP00000009965/1-757 VHLDLWVKSL SPQDRAAYKE YISNKRKSMT KLRGPNPKSS RTTLQSKS-- bmy_15225T0/1-912 VHLDLWVKSL SPQDRAAYKE YISNKRKSMT KLRGPNPKSS RTTLQSKSVR BACU008432/1-720 VHLDLWVKSL SPQDRAAYKE YISNKRKSMT KLRGPNPKSS RTTLQSKS-- 801 850 ENSP00000302640/1-764 ---------- ---------- ---------- ESEEDDEEDE DDEDEDEEEE ENSBTAP00000034691/1-757 ---------- ---------- ---------- ESEDDDEEDE DEDEEDDEEE ENSTTRP00000009965/1-757 ---------- ---------- ---------- ESEDDDEEDE EEEEEEEEEE bmy_15225T0/1-912 SPSQKGDRER GSEVPGVVWQ GPLMCFHPSQ ESEDDDEEDE DEDDEDDEEE BACU008432/1-720 ---------- ---------- ---------- ESEDDDEEDE DEDDEDEEEE 851 900 ENSP00000302640/1-764 DDENGDSSED GGDSSESSSE DESEDGDENE EDDEDEDDDE DDDEDEDNES ENSBTAP00000034691/1-757 DDENGDSSED GGDSSESSSE DESEDGDENE EDDEDEDDDE DDDEDEDNES ENSTTRP00000009965/1-757 DDENGDSSED GGDSSESSSE DESEDGDENE EDDDDEDDDE DDDEDEDNES bmy_15225T0/1-912 DDENGDSSED GGDSSESSSE DESEDGDENE EDDDDEDDDE DDDEDEDNES BACU008432/1-720 DDENGDSSED GGDSSESSSE DESEDGDENE EDDDDEDDDE DDDEDEDNES 901 950 ENSP00000302640/1-764 EGSSSSSSSS GDSSDSDSN ENSBTAP00000034691/1-757 EGSSSSSSSS GDSSDSDSN ENSTTRP00000009965/1-757 EGSSSSSSSS GDSSDSDSN bmy_15225T0/1-912 EGSSSSSSSS GDSSDSDSN BACU008432/1-720 EGSSSSSSSS GDSSDSDSN