KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:44:45 2014 Check: 00 .. Name: ENSBTAP00000034705/1-815 Len: 935 Check: 9232 Weight: 1.00 Name: ENSP00000313731/1-788 Len: 935 Check: 6048 Weight: 1.00 Name: ENSTTRP00000005935/1-782 Len: 935 Check: 1876 Weight: 1.00 Name: bmy_11369T0/1-875 Len: 935 Check: 1309 Weight: 1.00 Name: BACU008408/1-585 Len: 935 Check: 65 Weight: 1.00 // 1 50 ENSBTAP00000034705/1-815 MLCGSWRSRR RQPEEPL--- -VPAQVATPV GLASPPASQE GNIKRPGLRA ENSP00000313731/1-788 MLCGRWRRCR RPPEEPPVAA QVAAQVAAPV ALPSPPTPSD GGTKRPGLRA ENSTTRP00000005935/1-782 MLCGRWRSRH RRREEPP--- -VPAQVAAPV ALPSPPAPQD GGNKRPGLRA bmy_11369T0/1-875 MLCGRWRSRH RRHEEPP--- -VPAQVAAPV ALPSPPAPQD GGNKRPGLRA BACU008408/1-585 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000034705/1-815 LKKMGLSEDE DVRAMLRGSR FCKIRSPTWQ KERLYRLQED GLSVWFQRRI ENSP00000313731/1-788 LKKMGLTEDE DVRAMLRGSR LRKIRSRTWH KERLYRLQED GLSVWFQRRI ENSTTRP00000005935/1-782 LKKMGSTVDE DVRVML-CSR LCKIRSRTWH KERLYRMQED GLSVWFQRRI bmy_11369T0/1-875 LKKMGLTEDE DVRAMLRGSR LCKIRSRTWK KERLYRLQED CLSVWFQRRI BACU008408/1-585 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000034705/1-815 PRAPSQHIFF VQHIEAIREG HQSEGLRHFG GAFEPARCLT IAFKGRRKNL ENSP00000313731/1-788 PRAPSQHIFF VQHIEAVREG HQSEGLRRFG GAFAPARCLT IAFKGRRKNL ENSTTRP00000005935/1-782 PRALSQHIFI VNHIEAVRED HQSEAMRCLG GPFEPARCLT IAFKGRRKNL bmy_11369T0/1-875 PRAPSQHIFF VQHIEAVREG HQSEGLRRFG GAFEPARCLT IAFKGRRKNL BACU008408/1-585 ---------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000034705/1-815 DLVAPTAEEA QRWVRGLAKL RARLDAMSQR ERLDH----- ---------- ENSP00000313731/1-788 DLAAPTAEEA QRWVRGLTKL RARLDAMSQR ERLDP----- ---------- ENSTTRP00000005935/1-782 DLAAPTSEEA QRWVRGLAKL RARLDAMTQC ERLDP----- ---------- bmy_11369T0/1-875 DLVAPTAEEA QRWVRGLAKL RARLDAMSQR ERLDQYPPGE GSGLRGEGGR BACU008408/1-585 ---------- ---------- ---------- ---------- ---------- 201 250 ENSBTAP00000034705/1-815 ---------- ---WIHSYLH RADSNQDSKM SFKEIKNLLR MVNLDMNDMY ENSP00000313731/1-788 ---------- ---WIHSYLH RADSNQDSKM SFKEIKSLLR MVNVDMNDMY ENSTTRP00000005935/1-782 ---------- ---WIHFYLH RADSNQDSKM SFKEIKNLLR MVNVDMNDMY bmy_11369T0/1-875 PCAGRIYFLS THTWIHFYLH RADSNQDSKM SFKEIKNLLR MVNVDMNDMY BACU008408/1-585 ---------- ---------- ---------M SFKEIKNLLR MVNVDMNDMY 251 300 ENSBTAP00000034705/1-815 AYGLFKECDR SKNERLEGPE IEEFLRRLLK RPELEEIFHR YSGEDRVLSA ENSP00000313731/1-788 AYLLFKECDH SNNDRLEGAE IEEFLRRLLK RPELEEIFHQ YSGEDRVLSA ENSTTRP00000005935/1-782 AYGLFKECDR SNNEWLEGPE IEEFLRRLLK RPELEEIFHR YSGEDRVLSA bmy_11369T0/1-875 AYRLFKECDR SNDEWLEEPE IEEFLRRLLK RPELEEIFHR YSGEDXVLST BACU008408/1-585 AYRLFKECDR SNNEWLEGPE IEEFLRRLLK RPELEEIFHR YSGEDRVLST 301 350 ENSBTAP00000034705/1-815 SELLEFLEDQ GEHKATLAHA QQLIHTYELN ETAKQHELMT LDGFMMYLLS ENSP00000313731/1-788 PELLEFLEDQ GEEGATLARA QQLIQTYELN ETAKQHELMT LDGFMMYLLS ENSTTRP00000005935/1-782 PELLEFLEDQ GEDDATLAHA QQLIHTYELN ETAKQHELMT LDGFMMYLLS bmy_11369T0/1-875 PELLEFLEDQ ---------- ---------- --AKQHELMT LDGFMMYLLS BACU008408/1-585 SELLEFLEDQ GEDGATLAHA RQLIHTYELN ETAKQHELMT LDGFMLYLLS 351 400 ENSBTAP00000034705/1-815 PEGAALDLAH TRVFQDMDQP LAHYFISSSH NTYLTDSQIG GPSSTEAYV- ENSP00000313731/1-788 PEGAALDNTH TCVFQDMNQP LAHYFISSSH NTYLTDSQIG GPSSTEAYD- ENSTTRP00000005935/1-782 PEGAALNPAH TCVFQDMNQS LAHYFISSSH NTYLTDSQIG GPSSTEAYG- bmy_11369T0/1-875 PEGAALNPAH TCVFQDMNQP LAHYFISSSH NTYLTDSQIG GPSSSEAYVR BACU008408/1-585 PEGAALNLAH TCVFQDMNQP LAHYFISCSH NTYLTDSQIG GPSSTEAYV- 401 450 ENSBTAP00000034705/1-815 ---------- ---------- ---------- ---------- ---------- ENSP00000313731/1-788 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005935/1-782 ---------- ---------- ---------- ---------- ---------- bmy_11369T0/1-875 YHSGGDGGSE HVWEPVWGGT WGSTPAMGFL GPTWGPVHCP ALCHPHDTLP BACU008408/1-585 ---------- ---------- ---------- ---------- ---------- 451 500 ENSBTAP00000034705/1-815 ------RAFA QGCRCVELDC WEGPGGEPVI YHGHTLTSKI LFRDVIQAVR ENSP00000313731/1-788 ------RAFA QGCRCVELDC WEGPGGEPVI YHGHTLTSKI LFRDVVQAVR ENSTTRP00000005935/1-782 ------RAFA QGCRCVELDC WEGPGGEPVI YHGHTLTSKI LFRDVIQAVR bmy_11369T0/1-875 IHPSVRRAFA QGCRCVELDC WEGPGGEPVI YHGHTLTSKI LFRDVIQAVR BACU008408/1-585 ------RAFA QGCRCVELDC WEGPGGEPVI YHGHTLTSKI LFRDVIQAVR 501 550 ENSBTAP00000034705/1-815 EHAFTVSPYP VILSLENHCG LEQQAAMARH LHTILGDMLV TQTLDSQNPE ENSP00000313731/1-788 DHAFTLSPYP VILSLENHCG LEQQAAMARH LCTILGDMLV TQALDSPNPE ENSTTRP00000005935/1-782 DHAFTLSPYP VILSLENHCG LEQQAAMARH LHTILGDMLV TQLLDSQNPE bmy_11369T0/1-875 DHAFTLSPYP VILSLENHCG LEQQAAMARH LHTILGDMLV TQLLDSQNPE BACU008408/1-585 DHAFTLSPYP VILSLENHCG LEQQAAMARH LHTILGDMLV TQLLDSQNPE 551 600 ENSBTAP00000034705/1-815 ELPSPERLKG RVLVKGKKLP DTRSENGCIL SEREEEDE-E EDEEEELGAV ENSP00000313731/1-788 ELPSPEQLKG RVLVKGKKLP AARSEDGRAL SDREEEEEDD EEEEEEVEAA ENSTTRP00000005935/1-782 ELPSPEQLKG RVLVKGKRLP AARNEDGRIL SDREEDNE-D EDEEEEAGAP bmy_11369T0/1-875 ELPSPEQLKG RVLVKGKKLP AARNEDGRVL SDQEEDNE-D EDEEEEAGAA BACU008408/1-585 ELPSPEQLKG RVLVKGKKLP AARNEDGRVL SDREEDNE-D EDEEEEAGAA 601 650 ENSBTAP00000034705/1-815 EQRRRAKQIS PELSALAVYC CATRLRTLRP PPVPPQPCQV SSLSERKAKK ENSP00000313731/1-788 AQRRLAKQIS PELSALAVYC HATRLR-LHP APNAPQPCQV SSLSERKAKK ENSTTRP00000005935/1-782 EQRRRAKQIS PELSALAVYC CASRLR-LRP APAPPQPCQV SSLSERKAKK bmy_11369T0/1-875 EQRRRAKQIS PELSALAVYC CATRLRTLRP A--LPQPCQV SSLSERKAKK BACU008408/1-585 EQRRRAKQIS PELSALAVYC CATRLRTLRS V--LPQPCQV SSLSERKAKK 651 700 ENSBTAP00000034705/1-815 LIREAGNSFV RHNARHLTRV YPLGLRMNSA NYSPQEMWNS GCQLVALNFQ ENSP00000313731/1-788 LIREAGNSFV RHNARQLTRV YPLGLRMNSA NYSPQEMWNS GCQLVALNFQ ENSTTRP00000005935/1-782 LIREAGNSFI RHNACQLTRV YPLGLRMNSA NYNPQEMWNS GCQLVALNFQ bmy_11369T0/1-875 LIREAGNSFI RHNACQLTRV YPLGLRMNSA NYNPQEMWNS GCQLVALNFQ BACU008408/1-585 LIREAGNSFI RHNACQLTRV YPLGLRMNSA NYNPQEMWNA GCQLVALNFQ 701 750 ENSBTAP00000034705/1-815 TPGYEMDLNA GRFLVNGQCG YILKPVRLRS PNTTFDPECP GPPRTTLTIQ ENSP00000313731/1-788 TPGYEMDLNA GRFLVNGQCG YVLKPACLRQ PDSTFDPEYP GPPRTTLSIQ ENSTTRP00000005935/1-782 TPGYEMDLNA GRFLINGQCG YVLKPACLRQ PDTTFDPECP GPPRTTFTIQ bmy_11369T0/1-875 TPGYEMDLNA GRFLINGQCG YVLKPACLRQ PDTTFDPECP GPPRTTFTIQ BACU008408/1-585 TPGYEMDLNA GRFLINGRCG YVLKPACLRQ PDTTFDPECP GTPRTTFTIQ 751 800 ENSBTAP00000034705/1-815 VLTAQQLPKL NTEKPNSIVD PLVRIEIHGV PADCARKKTN YVLNNG---- ENSP00000313731/1-788 VLTAQQLPKL NAEKPHSIVD PLVRIEIHGV PADCARQETD YVLNNG---- ENSTTRP00000005935/1-782 VLTAQQLPKL NAEKPNSIVD PLVRIEIHGV PADCACKETN YVLNNG---- bmy_11369T0/1-875 VLTAQQLPKL NAEKPNSIVD PLVRIEIHGV PADCACKETN YVLNNGGAPA BACU008408/1-585 VLTAQQLPKL NAEKPNSIVD PLVRIEIHGV PADCACKETN YVLNNG---- 801 850 ENSBTAP00000034705/1-815 ---------- ---------- ------FNPR WGQTLEFQLR VPELALVRFV ENSP00000313731/1-788 ---------- ---------- ------FNPR WGQTLQFQLR APELALVRFV ENSTTRP00000005935/1-782 ---------- ---------- ------FNPR WGQTLQFQLR APELVLVRFV bmy_11369T0/1-875 GAGWGQTEGS GAGAGRALDG QACALGFNPH WGQTLQFQLR APELVLVRFV BACU008408/1-585 ---------- ---------- ------FNPR WGQTLQFQLR APELVLVRFV 851 900 ENSBTAP00000034705/1-815 VEDYDATSPN DFVGQFTLPL SSLKQGYRHI HLLSKDGASL SPATLFVHIC ENSP00000313731/1-788 VEDYDATSPN DFVGQFTLPL SSLKQGYRHI HLLSKDGASL SPATLFIQIR ENSTTRP00000005935/1-782 VEDYDATSPN DFVGQFTLPL SSLKQGYRHI HLLSKDGASL SPATLFVHIC bmy_11369T0/1-875 VEDYDATSPN DFVGQFTLPL SSLKQGYRHI HLLSKDGASL SPATLFVHIC BACU008408/1-585 VEDYDATSPN DFVGQFTLPL SSLKQGYRHI HLLSKDGASL SPATLFVHIC 901 950 ENSBTAP00000034705/1-815 IRSRATLGSA GASLCPTPAL RSGGRDGGPA PPSSR ENSP00000313731/1-788 IQRS------ ---------- ---------- ----- ENSTTRP00000005935/1-782 IQRS------ ---------- ---------- ----- bmy_11369T0/1-875 IQRS------ ---------- ---------- ----- BACU008408/1-585 IQRS------ ---------- ---------- -----