KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:44:46 2014 Check: 00 .. Name: ENSTTRP00000005948/1-1107 Len: 1158 Check: 1315 Weight: 1.00 Name: ENSP00000329219/1-1100 Len: 1158 Check: 2527 Weight: 1.00 Name: bmy_11365T0/1-1138 Len: 1158 Check: 2062 Weight: 1.00 Name: ENSBTAP00000034709/1-1110 Len: 1158 Check: 5188 Weight: 1.00 // 1 50 ENSTTRP00000005948/1-1107 MGNAAGSAEQ PASPAALSPK HPAVPKQPMP AAGELEERFN RVLXXXXXXX ENSP00000329219/1-1100 MGNAAGSAEQ PAGPAAPPPK QPAPPKQPMP AAGELEERFN RALNCMNLPP bmy_11365T0/1-1138 MGNAAGSAEQ PASPAALSPK HPAAPKQPMP AAGELEERFN RVLNCMNLPP ENSBTAP00000034709/1-1110 MGNAAGSAEQ PASPAALAPK QPAAPKQPMP AAGELEERFN RVLNCMNLPP 51 100 ENSTTRP00000005948/1-1107 XXXXXXXXXX XXXXXXXXXX XERFQVKNPP EAYIQKLKSY LEIGGVSRKV ENSP00000329219/1-1100 DKVQLLSQYD NEKKWELICD QERFQVKNPP AAYIQKLKSY VDTGGVSRKV bmy_11365T0/1-1138 DKVQLLSQYD NEKKWELICD QERFQVKNPP EAYIQKLKSY LEIGGVSRKV ENSBTAP00000034709/1-1110 DKVQLLSQYD NEKKWELICD QERFQVKNPP AAYIQKLKSY LETGGVSRKV 101 150 ENSTTRP00000005948/1-1107 AADWMSNLGF KRRVQESTQV LRELETSLRT NHIGWVQEFL NEENRGLDVL ENSP00000329219/1-1100 AADWMSNLGF KRRVQESTQV LRELETSLRT NHIGWVQEFL NEENRGLDVL bmy_11365T0/1-1138 AADWMSNLGF KRRVQESTQV LRELETSLRT NHIGWVQEFL NEENRGLDVL ENSBTAP00000034709/1-1110 AADWMPNLGF KRRVQESTQV LRELEISLRT NHIGWVQEFL NEENRGLDVL 151 200 ENSTTRP00000005948/1-1107 LEYLAFVQCS VTYYMESTDN GAPGSEKSKP LEQSVEDLSK GPPSSLLPQP ENSP00000329219/1-1100 LEYLAFAQCS VTYDMESTDN GASNSEKNKP LEQSVEDLSK GPPSSV---P bmy_11365T0/1-1138 LEYLASVQCS VTYYMESTDN GAPGSEKSKP LEQSVEDLSK GPPSSLLPQP ENSBTAP00000034709/1-1110 LDYLAFAQCS VAYNMETTDN GAPGSEKSKP LEQSVEDLSK GPPSSLPPPP 201 250 ENSTTRP00000005948/1-1107 KSRHLTIXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXSGFSLV ENSP00000329219/1-1100 KSRHLTIKLT PAHSRKALRN SRIVSQKDDV HVCIMCLRAI MNYQSGFSLV bmy_11365T0/1-1138 KSRHLTIKLT PAHSRKALRN SRIVSQKDDV HVCIMCLRAI MNYQSGFSLV ENSBTAP00000034709/1-1110 KSRHLTIKLT PAHSKKALRN SRIVSQKDDV HVCIMCLRAI MNYQSGFSLV 251 300 ENSTTRP00000005948/1-1107 MNHPACVNEI ALSLNNKNPR TKALVLELLA AVCLVRGGHD IILSAFDNFK ENSP00000329219/1-1100 MNHPACVNEI ALSLNNKNPR TKALVLELLA AVCLVRGGHD IILAAFDNFK bmy_11365T0/1-1138 MNHPACVNEI ALSLNNKNPR TKALVLELLA AVCLVRGGHD IILSAFDNFK ENSBTAP00000034709/1-1110 MNHPACVNEI ALSLNNKNPR TKALVLELLA AVCLVRGGHD IILSAFDNFK 301 350 ENSTTRP00000005948/1-1107 EVCGEQHRFE KLMEYFRNED SNIDFMVACM QFINIVVHSV ENMNFRVFLQ ENSP00000329219/1-1100 EVCGEQHRFE KLMEYFRNED SNIDFMVACM QFINIVVHSV ENMNFRVFLQ bmy_11365T0/1-1138 EVCGEQHRFE KLMEYFRNED SNIDFMVACM QFINIVVHSV ENMNFRVFLQ ENSBTAP00000034709/1-1110 EVCGEQHRFE KLMEYFRNED SNIDFMVACM QFINIVVHSV ENMNFRVFLQ 351 400 ENSTTRP00000005948/1-1107 YEFTHLGLDL YLERLRLTES DKLQVQIQAY LDNVFDVGAL LEDTETKNAV ENSP00000329219/1-1100 YEFTHLGLDL YLERLRLTES DKLQVQIQAY LDNIFDVGAL LEDTETKNAV bmy_11365T0/1-1138 YEFTHLGLDL ----LRLTES DKLQVQIQAY LDNVFDVGAL LEDTETKNAV ENSBTAP00000034709/1-1110 YEFTHLGLDL YLERLRLTES DKLQVQIQAY LDNIFDVGAL LEDTETKNAV 401 450 ENSTTRP00000005948/1-1107 LEHVEELQEQ VALLTERLRD AENESMAKIA ELEKQLSQTR KELETLRERF ENSP00000329219/1-1100 LEHMEELQEQ VALLTERLRD AENESMAKIA ELEKQLSQAR KELETLRERF bmy_11365T0/1-1138 LEHVEELQEQ VALLTERLRD AENESMAKIA ELEKQLSQAR KELETLRERF ENSBTAP00000034709/1-1110 LEHMEELQEQ VALLTERLRD AENESMAKIA ELEKQLSQAR KELETLRERF 451 500 ENSTTRP00000005948/1-1107 SESTPMGTSR GPSEPEKVPA PAPARPSALE LKVEELEEKG LIRILRGPGD ENSP00000329219/1-1100 SESTAMGPSR RPPEPEKAPP AAPTRPSALE LKVEELEEKG LIRILRGPGD bmy_11365T0/1-1138 SESTPMGTSR RPSEPEKVPA PAPARPSALE LKVEELEEKG LIRILRGPGD ENSBTAP00000034709/1-1110 SESTLMGTSR RPSEPEKVPA PVPARPSALE LKVEELEEKG LIRILRGPGD 501 550 ENSTTRP00000005948/1-1107 AVSIEILPVA VATPSGSDAP TPRVPIGSPS PEL-PPAAEP VPGAATPPPP ENSP00000329219/1-1100 AVSIEILPVA VATPSGGDAP TPGVPTGSPS PDL-APAAEP APGAAPPPPP bmy_11365T0/1-1138 AVSIEILPVA VATPSGSDAP TPGVPTGSPS PGVQGLQAGW EIDTPFSPPP ENSBTAP00000034709/1-1110 AVSIEILPVA VATPSGSDAP TPGAPTGSPS PAEPAPGAAP PPPPPPPPPP 551 600 ENSTTRP00000005948/1-1107 LP--PPLPGL PSQQDATPLA PPPAPPLPGS PEPPPPPPLP GDQPPPPPPP ENSP00000329219/1-1100 P-----LPGL PSPQEAPPSA PPQAPPLPGS PEPPPAPPLP GDLPPPPPPP bmy_11365T0/1-1138 P--------- --RFSLGSEL PPAAEPVPGA ATPP--PPLP GDQPPPPPPP ENSBTAP00000034709/1-1110 PPPLPPLPGL PSQQEAPPLA PPLAPPLPGS PEPPPPPPLP GDQPPPPPPP 601 650 ENSTTRP00000005948/1-1107 PLPPGADGSV PPP---PPPP AGGPSAALGG PGSEMGPGMM AKKPIQTKFR ENSP00000329219/1-1100 PPPPGTDGPV PPPPPPPPPP PGGPPDALGR RDSELGPGVK AKKPIQTKFR bmy_11365T0/1-1138 PLPPGADGPV PPP---PPPP PGGPSAALGG PSSEMGPGMK AKKPIQTKFR ENSBTAP00000034709/1-1110 PPPPGADGQV PPP---PPPP PGGPTDAQAG PDSEMGPGVK AKKPIQTKFR 651 700 ENSTTRP00000005948/1-1107 MPLLNWVALK PNQITGTVFT ELNDEKVLQX XXXXXXXXXX XXXXXXXXXX ENSP00000329219/1-1100 MPLLNWVALK PSQITGTVFT ELNDEKVLQE LDMSDFEEQF KTKSQGPSLD bmy_11365T0/1-1138 MPLLNWVALK PNQITGTVFT ELNDEKVLQE LDMSDFEEQF KTKSQGPNLD ENSBTAP00000034709/1-1110 MPLLNWVALK PNQITGTVFT ELNDEKVLQE LDMSDFEEQF KTKSQGPSVD 701 750 ENSTTRP00000005948/1-1107 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXIETYDL ENSP00000329219/1-1100 LSALKSKAAQ KAPSKATLIE ANRAKNLAIT LRKGNLGAER ICQAIEAYDL bmy_11365T0/1-1138 LSALKSKAAQ KAPSKATLIE ANRAKNLAIT LRKGNLGADR ICQAIETYDL ENSBTAP00000034709/1-1110 LSALKSKAAQ KAPSKATLIE ANRAKNLAIT LRKGNLGADR ICQAIETYDL 751 800 ENSTTRP00000005948/1-1107 QTLGLDFLEL LTRFLPTEYE HSLIARFERE QRPIEELSEE DRFMLRFSRI ENSP00000329219/1-1100 QALGLDFLEL LMRFLPTEYE RSLITRFERE QRPMEELSEE DRFMLCFSRI bmy_11365T0/1-1138 QTLGLDFLEL LTRFLPTEYE HSLIARFERE QRPIEELSEE DRFMLRFSRI ENSBTAP00000034709/1-1110 QTLGLDFLEL LTRFLPTEYE RSLITRFERE QRPIEELSEE DRFMLRFSRI 801 850 ENSTTRP00000005948/1-1107 PRLPERMNTL TFLGNFPDTA QLLMPQLNAI IAASMSIKSS DKLRQILEIV ENSP00000329219/1-1100 PRLPERMTTL TFLGNFPDTA QLLMPQLNAI IAASMSIKSS DKLRQILEIV bmy_11365T0/1-1138 PRLPERVNTL TFLGNFPDTA QLLMPQLNAI IAASMSIKSS DKLRQILEIV ENSBTAP00000034709/1-1110 PRLPERMNTL TFLGNFPDTA QMLMPQLNAI IAASMSIKSS DKLRQILEIV 851 900 ENSTTRP00000005948/1-1107 LAFGNYMNSS RRGAAYGFRL QSLDALLEMK STDRKQTLLH YLVKVIAEKY ENSP00000329219/1-1100 LAFGNYMNSS KRGAAYGFRL QSLDALLEMK STDRKQTLLH YLVKVIAEKY bmy_11365T0/1-1138 LAFGNYMNSS KRGAAYGFRL QSLDALLEMK STDRKQTLLH YLVKVIAEKY ENSBTAP00000034709/1-1110 LAFGNYMNSS KRGAAYGFRL QSLDALLEMK STDRKQTLLH YLVKVIAEKY 901 950 ENSTTRP00000005948/1-1107 PQLTGFHSDL HFLDKAG--- ---------- ---------- ---------- ENSP00000329219/1-1100 PQLTGFHSDL HFLDKAG--- ---------- ---------- ---------- bmy_11365T0/1-1138 PQLTGFHSDL HFLDKAGSGM GGGRGSALGT DTGWEKAAGP QEVTGRECCL ENSBTAP00000034709/1-1110 PQLTGFHSDL HFLDKAG--- ---------- ---------- ---------- 951 1000 ENSTTRP00000005948/1-1107 ---------- --SVSLDSVL ADVRSLQRGL ELTQREFVRQ DDCAVLKEFL ENSP00000329219/1-1100 ---------- --SVSLDSVL ADVRSLQRGL ELTQREFVRQ DDCMVLKEFL bmy_11365T0/1-1138 SDSLLLYCPT SHSVSLDSVL ADVRSLQRGL ELTQREFVRQ DDCAVLKEFL ENSBTAP00000034709/1-1110 ---------- --SVSLDSVL GDVRSLQRGL ELTQREFVRQ DDCVVLKEFL 1001 1050 ENSTTRP00000005948/1-1107 RANSPIMDKL LADSKTAQEA YESVVEYFGE NPKTTSPSTF FSLFSRFIKA ENSP00000329219/1-1100 RANSPTMDKL LADSKTAQEA FESVVEYFGE NPKTTSPGLF FSLFSRFIKA bmy_11365T0/1-1138 RANSPIMDKL LADSKTAQEA YESVVEYFGE NPKTTSPSMF FSLFSRFIKA ENSBTAP00000034709/1-1110 RVNSPVMDKL LADSKTAQEA YESVVEYFGE NPKTTSPSMF FSLFSRFIKA 1051 1100 ENSTTRP00000005948/1-1107 YKRAEQEVEQ WKKAAAAQEA GTDTPEKGEP PAPKSPPKIR RQQMDLISEL ENSP00000329219/1-1100 YKKAEQEVEQ WKKEAAAQEA GADTPGKGEP PAPKSPPKAR RPQMDLISEL bmy_11365T0/1-1138 YKKAEQEVEQ WKKAAAAQEA GTDTPGKGEP PAPKSPPKIR RQQMDLISEL ENSBTAP00000034709/1-1110 YKKAEQEVEQ WKKEAAAQEA GTDTAGKGEP QAPKSPPKVR RQQMDLISEL 1101 1150 ENSTTRP00000005948/1-1107 KRKQQKEPLI YESDRDGAIE DIITDLRNQP YIRTDTGRRS ARRRPPGPPV ENSP00000329219/1-1100 KRRQQKEPLI YESDRDGAIE DIITVIKTVP FT-ARTGKRT SRLLCEAS-- bmy_11365T0/1-1138 KRKQQKEPLI YESDRDGAIE DIITDLRNQP YIRADTGRRS ARRRPPGPPL ENSBTAP00000034709/1-1110 KRKQQKEPLI YEGDRDGAIE DIITDLRNQP YIRADTGRRS ARRRPPGPPL 1151 1200 ENSTTRP00000005948/1-1107 QVTSDLSL ENSP00000329219/1-1100 -LGEEMPL bmy_11365T0/1-1138 QLTSDLSL ENSBTAP00000034709/1-1110 QVTSDLSL