KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 4 Type: P Thu May 15 17:44:46 2014 Check: 00 ..
Name: ENSTTRP00000005948/1-1107 Len: 1158 Check: 1315 Weight: 1.00
Name: ENSP00000329219/1-1100 Len: 1158 Check: 2527 Weight: 1.00
Name: bmy_11365T0/1-1138 Len: 1158 Check: 2062 Weight: 1.00
Name: ENSBTAP00000034709/1-1110 Len: 1158 Check: 5188 Weight: 1.00
//
1 50
ENSTTRP00000005948/1-1107 MGNAAGSAEQ PASPAALSPK HPAVPKQPMP AAGELEERFN RVLXXXXXXX
ENSP00000329219/1-1100 MGNAAGSAEQ PAGPAAPPPK QPAPPKQPMP AAGELEERFN RALNCMNLPP
bmy_11365T0/1-1138 MGNAAGSAEQ PASPAALSPK HPAAPKQPMP AAGELEERFN RVLNCMNLPP
ENSBTAP00000034709/1-1110 MGNAAGSAEQ PASPAALAPK QPAAPKQPMP AAGELEERFN RVLNCMNLPP
51 100
ENSTTRP00000005948/1-1107 XXXXXXXXXX XXXXXXXXXX XERFQVKNPP EAYIQKLKSY LEIGGVSRKV
ENSP00000329219/1-1100 DKVQLLSQYD NEKKWELICD QERFQVKNPP AAYIQKLKSY VDTGGVSRKV
bmy_11365T0/1-1138 DKVQLLSQYD NEKKWELICD QERFQVKNPP EAYIQKLKSY LEIGGVSRKV
ENSBTAP00000034709/1-1110 DKVQLLSQYD NEKKWELICD QERFQVKNPP AAYIQKLKSY LETGGVSRKV
101 150
ENSTTRP00000005948/1-1107 AADWMSNLGF KRRVQESTQV LRELETSLRT NHIGWVQEFL NEENRGLDVL
ENSP00000329219/1-1100 AADWMSNLGF KRRVQESTQV LRELETSLRT NHIGWVQEFL NEENRGLDVL
bmy_11365T0/1-1138 AADWMSNLGF KRRVQESTQV LRELETSLRT NHIGWVQEFL NEENRGLDVL
ENSBTAP00000034709/1-1110 AADWMPNLGF KRRVQESTQV LRELEISLRT NHIGWVQEFL NEENRGLDVL
151 200
ENSTTRP00000005948/1-1107 LEYLAFVQCS VTYYMESTDN GAPGSEKSKP LEQSVEDLSK GPPSSLLPQP
ENSP00000329219/1-1100 LEYLAFAQCS VTYDMESTDN GASNSEKNKP LEQSVEDLSK GPPSSV---P
bmy_11365T0/1-1138 LEYLASVQCS VTYYMESTDN GAPGSEKSKP LEQSVEDLSK GPPSSLLPQP
ENSBTAP00000034709/1-1110 LDYLAFAQCS VAYNMETTDN GAPGSEKSKP LEQSVEDLSK GPPSSLPPPP
201 250
ENSTTRP00000005948/1-1107 KSRHLTIXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXSGFSLV
ENSP00000329219/1-1100 KSRHLTIKLT PAHSRKALRN SRIVSQKDDV HVCIMCLRAI MNYQSGFSLV
bmy_11365T0/1-1138 KSRHLTIKLT PAHSRKALRN SRIVSQKDDV HVCIMCLRAI MNYQSGFSLV
ENSBTAP00000034709/1-1110 KSRHLTIKLT PAHSKKALRN SRIVSQKDDV HVCIMCLRAI MNYQSGFSLV
251 300
ENSTTRP00000005948/1-1107 MNHPACVNEI ALSLNNKNPR TKALVLELLA AVCLVRGGHD IILSAFDNFK
ENSP00000329219/1-1100 MNHPACVNEI ALSLNNKNPR TKALVLELLA AVCLVRGGHD IILAAFDNFK
bmy_11365T0/1-1138 MNHPACVNEI ALSLNNKNPR TKALVLELLA AVCLVRGGHD IILSAFDNFK
ENSBTAP00000034709/1-1110 MNHPACVNEI ALSLNNKNPR TKALVLELLA AVCLVRGGHD IILSAFDNFK
301 350
ENSTTRP00000005948/1-1107 EVCGEQHRFE KLMEYFRNED SNIDFMVACM QFINIVVHSV ENMNFRVFLQ
ENSP00000329219/1-1100 EVCGEQHRFE KLMEYFRNED SNIDFMVACM QFINIVVHSV ENMNFRVFLQ
bmy_11365T0/1-1138 EVCGEQHRFE KLMEYFRNED SNIDFMVACM QFINIVVHSV ENMNFRVFLQ
ENSBTAP00000034709/1-1110 EVCGEQHRFE KLMEYFRNED SNIDFMVACM QFINIVVHSV ENMNFRVFLQ
351 400
ENSTTRP00000005948/1-1107 YEFTHLGLDL YLERLRLTES DKLQVQIQAY LDNVFDVGAL LEDTETKNAV
ENSP00000329219/1-1100 YEFTHLGLDL YLERLRLTES DKLQVQIQAY LDNIFDVGAL LEDTETKNAV
bmy_11365T0/1-1138 YEFTHLGLDL ----LRLTES DKLQVQIQAY LDNVFDVGAL LEDTETKNAV
ENSBTAP00000034709/1-1110 YEFTHLGLDL YLERLRLTES DKLQVQIQAY LDNIFDVGAL LEDTETKNAV
401 450
ENSTTRP00000005948/1-1107 LEHVEELQEQ VALLTERLRD AENESMAKIA ELEKQLSQTR KELETLRERF
ENSP00000329219/1-1100 LEHMEELQEQ VALLTERLRD AENESMAKIA ELEKQLSQAR KELETLRERF
bmy_11365T0/1-1138 LEHVEELQEQ VALLTERLRD AENESMAKIA ELEKQLSQAR KELETLRERF
ENSBTAP00000034709/1-1110 LEHMEELQEQ VALLTERLRD AENESMAKIA ELEKQLSQAR KELETLRERF
451 500
ENSTTRP00000005948/1-1107 SESTPMGTSR GPSEPEKVPA PAPARPSALE LKVEELEEKG LIRILRGPGD
ENSP00000329219/1-1100 SESTAMGPSR RPPEPEKAPP AAPTRPSALE LKVEELEEKG LIRILRGPGD
bmy_11365T0/1-1138 SESTPMGTSR RPSEPEKVPA PAPARPSALE LKVEELEEKG LIRILRGPGD
ENSBTAP00000034709/1-1110 SESTLMGTSR RPSEPEKVPA PVPARPSALE LKVEELEEKG LIRILRGPGD
501 550
ENSTTRP00000005948/1-1107 AVSIEILPVA VATPSGSDAP TPRVPIGSPS PEL-PPAAEP VPGAATPPPP
ENSP00000329219/1-1100 AVSIEILPVA VATPSGGDAP TPGVPTGSPS PDL-APAAEP APGAAPPPPP
bmy_11365T0/1-1138 AVSIEILPVA VATPSGSDAP TPGVPTGSPS PGVQGLQAGW EIDTPFSPPP
ENSBTAP00000034709/1-1110 AVSIEILPVA VATPSGSDAP TPGAPTGSPS PAEPAPGAAP PPPPPPPPPP
551 600
ENSTTRP00000005948/1-1107 LP--PPLPGL PSQQDATPLA PPPAPPLPGS PEPPPPPPLP GDQPPPPPPP
ENSP00000329219/1-1100 P-----LPGL PSPQEAPPSA PPQAPPLPGS PEPPPAPPLP GDLPPPPPPP
bmy_11365T0/1-1138 P--------- --RFSLGSEL PPAAEPVPGA ATPP--PPLP GDQPPPPPPP
ENSBTAP00000034709/1-1110 PPPLPPLPGL PSQQEAPPLA PPLAPPLPGS PEPPPPPPLP GDQPPPPPPP
601 650
ENSTTRP00000005948/1-1107 PLPPGADGSV PPP---PPPP AGGPSAALGG PGSEMGPGMM AKKPIQTKFR
ENSP00000329219/1-1100 PPPPGTDGPV PPPPPPPPPP PGGPPDALGR RDSELGPGVK AKKPIQTKFR
bmy_11365T0/1-1138 PLPPGADGPV PPP---PPPP PGGPSAALGG PSSEMGPGMK AKKPIQTKFR
ENSBTAP00000034709/1-1110 PPPPGADGQV PPP---PPPP PGGPTDAQAG PDSEMGPGVK AKKPIQTKFR
651 700
ENSTTRP00000005948/1-1107 MPLLNWVALK PNQITGTVFT ELNDEKVLQX XXXXXXXXXX XXXXXXXXXX
ENSP00000329219/1-1100 MPLLNWVALK PSQITGTVFT ELNDEKVLQE LDMSDFEEQF KTKSQGPSLD
bmy_11365T0/1-1138 MPLLNWVALK PNQITGTVFT ELNDEKVLQE LDMSDFEEQF KTKSQGPNLD
ENSBTAP00000034709/1-1110 MPLLNWVALK PNQITGTVFT ELNDEKVLQE LDMSDFEEQF KTKSQGPSVD
701 750
ENSTTRP00000005948/1-1107 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXIETYDL
ENSP00000329219/1-1100 LSALKSKAAQ KAPSKATLIE ANRAKNLAIT LRKGNLGAER ICQAIEAYDL
bmy_11365T0/1-1138 LSALKSKAAQ KAPSKATLIE ANRAKNLAIT LRKGNLGADR ICQAIETYDL
ENSBTAP00000034709/1-1110 LSALKSKAAQ KAPSKATLIE ANRAKNLAIT LRKGNLGADR ICQAIETYDL
751 800
ENSTTRP00000005948/1-1107 QTLGLDFLEL LTRFLPTEYE HSLIARFERE QRPIEELSEE DRFMLRFSRI
ENSP00000329219/1-1100 QALGLDFLEL LMRFLPTEYE RSLITRFERE QRPMEELSEE DRFMLCFSRI
bmy_11365T0/1-1138 QTLGLDFLEL LTRFLPTEYE HSLIARFERE QRPIEELSEE DRFMLRFSRI
ENSBTAP00000034709/1-1110 QTLGLDFLEL LTRFLPTEYE RSLITRFERE QRPIEELSEE DRFMLRFSRI
801 850
ENSTTRP00000005948/1-1107 PRLPERMNTL TFLGNFPDTA QLLMPQLNAI IAASMSIKSS DKLRQILEIV
ENSP00000329219/1-1100 PRLPERMTTL TFLGNFPDTA QLLMPQLNAI IAASMSIKSS DKLRQILEIV
bmy_11365T0/1-1138 PRLPERVNTL TFLGNFPDTA QLLMPQLNAI IAASMSIKSS DKLRQILEIV
ENSBTAP00000034709/1-1110 PRLPERMNTL TFLGNFPDTA QMLMPQLNAI IAASMSIKSS DKLRQILEIV
851 900
ENSTTRP00000005948/1-1107 LAFGNYMNSS RRGAAYGFRL QSLDALLEMK STDRKQTLLH YLVKVIAEKY
ENSP00000329219/1-1100 LAFGNYMNSS KRGAAYGFRL QSLDALLEMK STDRKQTLLH YLVKVIAEKY
bmy_11365T0/1-1138 LAFGNYMNSS KRGAAYGFRL QSLDALLEMK STDRKQTLLH YLVKVIAEKY
ENSBTAP00000034709/1-1110 LAFGNYMNSS KRGAAYGFRL QSLDALLEMK STDRKQTLLH YLVKVIAEKY
901 950
ENSTTRP00000005948/1-1107 PQLTGFHSDL HFLDKAG--- ---------- ---------- ----------
ENSP00000329219/1-1100 PQLTGFHSDL HFLDKAG--- ---------- ---------- ----------
bmy_11365T0/1-1138 PQLTGFHSDL HFLDKAGSGM GGGRGSALGT DTGWEKAAGP QEVTGRECCL
ENSBTAP00000034709/1-1110 PQLTGFHSDL HFLDKAG--- ---------- ---------- ----------
951 1000
ENSTTRP00000005948/1-1107 ---------- --SVSLDSVL ADVRSLQRGL ELTQREFVRQ DDCAVLKEFL
ENSP00000329219/1-1100 ---------- --SVSLDSVL ADVRSLQRGL ELTQREFVRQ DDCMVLKEFL
bmy_11365T0/1-1138 SDSLLLYCPT SHSVSLDSVL ADVRSLQRGL ELTQREFVRQ DDCAVLKEFL
ENSBTAP00000034709/1-1110 ---------- --SVSLDSVL GDVRSLQRGL ELTQREFVRQ DDCVVLKEFL
1001 1050
ENSTTRP00000005948/1-1107 RANSPIMDKL LADSKTAQEA YESVVEYFGE NPKTTSPSTF FSLFSRFIKA
ENSP00000329219/1-1100 RANSPTMDKL LADSKTAQEA FESVVEYFGE NPKTTSPGLF FSLFSRFIKA
bmy_11365T0/1-1138 RANSPIMDKL LADSKTAQEA YESVVEYFGE NPKTTSPSMF FSLFSRFIKA
ENSBTAP00000034709/1-1110 RVNSPVMDKL LADSKTAQEA YESVVEYFGE NPKTTSPSMF FSLFSRFIKA
1051 1100
ENSTTRP00000005948/1-1107 YKRAEQEVEQ WKKAAAAQEA GTDTPEKGEP PAPKSPPKIR RQQMDLISEL
ENSP00000329219/1-1100 YKKAEQEVEQ WKKEAAAQEA GADTPGKGEP PAPKSPPKAR RPQMDLISEL
bmy_11365T0/1-1138 YKKAEQEVEQ WKKAAAAQEA GTDTPGKGEP PAPKSPPKIR RQQMDLISEL
ENSBTAP00000034709/1-1110 YKKAEQEVEQ WKKEAAAQEA GTDTAGKGEP QAPKSPPKVR RQQMDLISEL
1101 1150
ENSTTRP00000005948/1-1107 KRKQQKEPLI YESDRDGAIE DIITDLRNQP YIRTDTGRRS ARRRPPGPPV
ENSP00000329219/1-1100 KRRQQKEPLI YESDRDGAIE DIITVIKTVP FT-ARTGKRT SRLLCEAS--
bmy_11365T0/1-1138 KRKQQKEPLI YESDRDGAIE DIITDLRNQP YIRADTGRRS ARRRPPGPPL
ENSBTAP00000034709/1-1110 KRKQQKEPLI YEGDRDGAIE DIITDLRNQP YIRADTGRRS ARRRPPGPPL
1151 1200
ENSTTRP00000005948/1-1107 QVTSDLSL
ENSP00000329219/1-1100 -LGEEMPL
bmy_11365T0/1-1138 QLTSDLSL
ENSBTAP00000034709/1-1110 QVTSDLSL