KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:44:49 2014 Check: 00 .. Name: ENSP00000392762/1-552 Len: 552 Check: 7896 Weight: 1.00 Name: ENSBTAP00000034765/1-517 Len: 552 Check: 2214 Weight: 1.00 Name: ENSTTRP00000003696/1-509 Len: 552 Check: 945 Weight: 1.00 Name: bmy_22345T0/1-272 Len: 552 Check: 4452 Weight: 1.00 Name: BACU018818/1-517 Len: 552 Check: 1374 Weight: 1.00 // 1 50 ENSP00000392762/1-552 MSPLWWGFLL SCLGCKILPG AQGQFPRVCM TVDSLVNKEC CPRLGAESAN ENSBTAP00000034765/1-517 MSPLGWGLLL GCLGCAFPSG ARAQFPRVCM TVGSLQAKEC CPPLGADPAN ENSTTRP00000003696/1-509 MSPLRWGLLL GCLGCALPPR VRAQFPRVCM TVGS-AAKEC CPPLGADTAD bmy_22345T0/1-272 ---------- ---------- ---------M TVGSLQAKEC CPPLGADTAD BACU018818/1-517 MSPLRWGLLL GCLGCALPPR VRAQFPRVCM TVGSLQAKEC CPPLGADTAD 51 100 ENSP00000392762/1-552 VCGSQQGRGQ CTEVRADTRP WSGPYILRNQ DDRELWPRKF FHRTCKCTGN ENSBTAP00000034765/1-517 VCGSREGRGQ CAEVQTDTRP WSGPYVLRNQ DDRERWPRKF FDRTCRCTGN ENSTTRP00000003696/1-509 VCGSREGRGQ CAEVQIDTRP WSGPYVLSNQ DDRERWPRKF FDRTCRCTGN bmy_22345T0/1-272 VCGSREGRGQ CAEVQTDTRP WSGPYVLRNQ DDRERWPRKF FDRTCRCTG- BACU018818/1-517 VCGSREGRGQ CAEVQTDTRP WSGPYVLRNQ DDRERWPRKF FDRTCRCTGN 101 150 ENSP00000392762/1-552 FAGYNCGDCK FGWTGPNCER KKPPVIRQNI HSLSPQEREQ FLGALDLAKK ENSBTAP00000034765/1-517 FAGYNCGNCR FGWTGPKCDQ KKPLVVRRDV HSLTPQEREQ FLDALDLAKY ENSTTRP00000003696/1-509 FAGYNCGDCK FGWTGPNCEQ KKPLVVRQNI HSLTPQEREQ FLGSLDLAKN bmy_22345T0/1-272 ---------- ---------- ---------- ---------- ---------- BACU018818/1-517 FAGYNCGDCK FGWTGPNCDQ KKPLVVRQNI HSLTPQEREQ FLGSLDLAKN 151 200 ENSP00000392762/1-552 RVHPDYVITT QHWLGLLGPN GTQPQFANCS VYDFFVWLHY YSVRDTLLGP ENSBTAP00000034765/1-517 TLHPDYVITT QHWLGLLGPN GTQPQIANCS IYDFFVWLHY YSVRDTLLGP ENSTTRP00000003696/1-509 TPHPDYVITT QHWLGLLGTN GTQPQIANCS IYDFFVWLHY YSVRDTLL-P bmy_22345T0/1-272 ---------- ---------- ---------- ---------- ---------P BACU018818/1-517 TPHPDYVITT QHWLGLLGTN GTQPQIANCS IYDFFVWLHY YSVRDTLLGP 201 250 ENSP00000392762/1-552 GRPYRAIDFS HQGPAFVTWH RYHLLCLERD LQRLIGNESF ALPYWNFATG ENSBTAP00000034765/1-517 GRPYKAIDFS HQGPAFVTWH RYHLLWLERD LQRLTGNESF ALPYWNFATG ENSTTRP00000003696/1-509 GRPYKAIDFS HQRPAFVTW- RYHLLC-GRD LQRLTHDLA- -----AYLAG bmy_22345T0/1-272 GRPYKAIDFS HQGPAFVTWH RYHLLWLERD LQRLTGNESF ALPYWNFATG BACU018818/1-517 GRPYKAIDFS HQGPAFVTWH RYHLLWLERD LQRLTGNESF ALPYWNFATG 251 300 ENSP00000392762/1-552 RNECDVCTDQ LFGAARPDDP TLISRNSRFS SWETVCDSLD DYNHLVTLCN ENSBTAP00000034765/1-517 RNECDVCTDQ LLGAARQDDP TLISQNSRFS SWEIVCDSLN DYNRRVTLCN ENSTTRP00000003696/1-509 GNECDVCTDQ LLGAARQDDP TLISQNSRFS SWEIVCDSLD DYNRRVTLCN bmy_22345T0/1-272 RNECDVCTDQ LLGAARQDDP TLISQNSRFS SWEIVCDSLD DYNRRVTLCN BACU018818/1-517 RNECDVCTDQ LLGAARQDDP TLISQNSRFS SWEIVCDSLD DYNRRVTLCN 301 350 ENSP00000392762/1-552 GTYEGLLRRN QMGRNSMKLP TLKDIRDCLS LQKFDNPPFF QNSTFSFRNA ENSBTAP00000034765/1-517 GTYEGLLKRN QMGRNSEKLP TLKDIQNCLS LKKFDSPPFF QNSTLSFRNA ENSTTRP00000003696/1-509 GTYEGLLRRN QVGRNSEKLP TLKDIQDCLS LKKFDNPPFF QNSTFSFRNA bmy_22345T0/1-272 GTYEGLLRRN QVGRSSEKLP TLKDIQDCLS LKKFDNPPFF QNSTFSFRNA BACU018818/1-517 GTYEGLLRRN QVGRSSEKLP TLKDIQDCLS LKKFDNPPFF QNSTFSFRNA 351 400 ENSP00000392762/1-552 LEGFDKADGT LDSQVMSLHN LVHSFLNGTN ALPHSAANDP IFVVISNRLL ENSBTAP00000034765/1-517 LEGFGKADGT LDSQVMNFHN LVHSFLNGTS ALPHSAANDP VFV------- ENSTTRP00000003696/1-509 LEGFDKADGT LDSQVMNLHN LVHSFLNGTN ALPHSAANDP VFV------- bmy_22345T0/1-272 LEGFDKADGT LDSQVMNLHN LVHSFLNGTN ALPHSAANDP VFV------- BACU018818/1-517 LEGFDKADGT LDSQVMNLHN LVHSFLNGTN ALPHSAANDP VFV------- 401 450 ENSP00000392762/1-552 YNATTNILEH VRKEKATKEL PSLHVLVLHS FTDAIFDEWM KRFNPPADAW ENSBTAP00000034765/1-517 ---------- ---------- ------ILHS FTDAIFDEWM KRFNPPVDAW ENSTTRP00000003696/1-509 ---------- ---------- ------VLHS FTDAVFDEWM KRFNPPVDAW bmy_22345T0/1-272 ---------- ---------- ---------- ---------- ---------- BACU018818/1-517 ---------- ---------- ------VLHS FTDAVFDEWM KRFNPPADAW 451 500 ENSP00000392762/1-552 PQELAPIGHN RMYNMVPFFP PVTNEELFLT SDQLGYSYAI DLPVSVEETP ENSBTAP00000034765/1-517 PRELAPIGHN RMYNMVPFFP PVTNEELFLT ADQLGYSYAI DLP--VEETP ENSTTRP00000003696/1-509 PQELAPIGHN RMYNMVPFFP PVTNEELFLT ADQLGYSYAI DLPVSVEETS bmy_22345T0/1-272 ---------- ---------- -VCSE----- ---------- ---------- BACU018818/1-517 PQELAPIGHN RMYNMVPFFP PVTNEELFLT ADQLGYSYAI DLP--VEETS 501 550 ENSP00000392762/1-552 GWPTTLLVVM GTLVALVGLF VLLAFLQYRR LRKGYTPLME THLSSKRYTE ENSBTAP00000034765/1-517 DWTTVLSVVT GMLVVLVVLF ALLLFLQYRR LRKGYTPLVE TQLSNKRYTE ENSTTRP00000003696/1-509 DWTTTLSVLM GMLVVLVGLF ALLLLLQYRR VRKGYTPLME TQLSKKRYTE bmy_22345T0/1-272 ---------- ---------- ---------- ---------- ---TQKR--- BACU018818/1-517 DWTTTLSVVM GMLVVLVGLF ALLIFLQYRR LRKGYTPLME TQLSNKRYTE 551 600 ENSP00000392762/1-552 EA ENSBTAP00000034765/1-517 EA ENSTTRP00000003696/1-509 EA bmy_22345T0/1-272 -- BACU018818/1-517 EA