KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:44:50 2014 Check: 00 .. Name: bmy_01716T0/1-753 Len: 929 Check: 2990 Weight: 1.00 Name: ENSTTRP00000009785/1-845 Len: 929 Check: 154 Weight: 1.00 Name: BACU001224/1-762 Len: 929 Check: 4554 Weight: 1.00 Name: ENSP00000314879/1-843 Len: 929 Check: 7384 Weight: 1.00 Name: ENSBTAP00000034797/1-711 Len: 929 Check: 3533 Weight: 1.00 // 1 50 bmy_01716T0/1-753 ---------- ---------- ----MLKPLV EKRRRDRINR SLEELRLLLL ENSTTRP00000009785/1-845 ERMKESWGKL GSGWTRAPGH QPLTRSRSVS QSYRHHLIPV SLSASGPSLP BACU001224/1-762 ---------- ---------- --MAVYRVCV GTGPYLMAGT LDSIFVTLVG ENSP00000314879/1-843 ---------- ---------- MPRGAFRPCL PALYFAFLTC PTPEQRM--- ENSBTAP00000034797/1-711 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_01716T0/1-753 ERTRDQNLRN PKLEK----A EILEFAVGYL RERSRVEPPA QDAEALASCY ENSTTRP00000009785/1-845 SGTRAPDNHL GEPVRGTGCA RCKQTTIRAK GCGREEGALA SNNRELLSEA BACU001224/1-762 TCGESPKRRL DRVGRDFAPG SVQKYKVRCS EELGELLLL- ---RLHKERY ENSP00000314879/1-843 SGTQAPDIHL GEPARGTGCV RGKQTSIRVQ DCGRREEARA ASRELRREKA ENSBTAP00000034797/1-711 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_01716T0/1-753 LSGFRECLLR LA-------- --------AF AHDASPAARA QLFSALQGYL ENSTTRP00000009785/1-845 LEHPRDSWTF PQ-------- --------AY PDPQ-ALTSG SAAQPCLACG BACU001224/1-762 AFFPKDSWYC SRICVTTHGG TLCHFPCYQW IEGYCTIELR PGTVRGTGCA ENSP00000314879/1-843 QEHPRESWAH PQ-------- --------PY PAPQ-PLALR PETQPCPACR ENSBTAP00000034797/1-711 ---------- ---------- ---------- ---------- ---------- 151 200 bmy_01716T0/1-753 RPKPPRPEPA GC-RGHPSFP PIMAVYRVCV GTGPYLMAGT LDSIFVTLVG ENSTTRP00000009785/1-845 SPPPGRLQ-- ----GHPSFP PIRAVYRVCV GTAPYLMAGT LDNIFVTLVG BACU001224/1-762 RCKQTTITAK GC--GREEGA PIMAVYRVCV GTGPYLMAGT LDSIFVTLVG ENSP00000314879/1-843 SSPPGRLLLR PALPGHPFLL PIMAVYRLCV TTGPYLRAGT LDNISVTLVG ENSBTAP00000034797/1-711 ---------- ---------- --MALYRVRV TTGPYLMAGT LDNIFVTLVG 201 250 bmy_01716T0/1-753 TCGESPKRRL DRVGRDFAPG SVQKYK---- ---------- ---------- ENSTTRP00000009785/1-845 TCGESPKRRL DHMGSGFAP- -VQK-KVRCS EELGELLLLR LHKERYAFFP BACU001224/1-762 TCGESPKRRL DRVGRDFAPG SVQKYKVRCS EELGELLLLR LHKERYAFFP ENSP00000314879/1-843 TCGESPKQRL DRMGRDFAPG SVQKYKVRCT AELGELLLLR VHKERYAFFR ENSBTAP00000034797/1-711 TCGESPKQRL DRMGRDFASG SVQKYKVRCS EELGELLLLR LHKERYAFFP 251 300 bmy_01716T0/1-753 -DSWYCSRIC VTTHGGTLCH FPCYQWIEGY CTIELRPGTE PIPLRGINLQ ENSTTRP00000009785/1-845 KDSWYCSRIC ITTPGGTLCH FPCYQWIEGY CTIELRQGTA ----RTI--- BACU001224/1-762 KDSWYCSRIC VTTHGGTLCH FPCYQWIEGY CTTELRPGTA ----RTI--- ENSP00000314879/1-843 KDSWYCSRIC VTEPDGSVSH FPCYQWIEGY CTVELRPGTA ----RTI--- ENSBTAP00000034797/1-711 QDSWYCSCIC VTAPDGTLSH FPCYQWMEGY CTIELRPGTA ----RTI--- 301 350 bmy_01716T0/1-753 AELLNFNRGR SPECLENLAG EALATTTGFS GMDEVPVRGC SDSFLNLGDV ENSTTRP00000009785/1-845 ------CQDS LPLLLDHRKW ELQARQECYR ---------- ---------- BACU001224/1-762 ------CQDS LPLLLDHRKW ELQARQECYR G--------- ---------- ENSP00000314879/1-843 ------CQDS LPLLLDHRTR ELRARQECYR ---------- ---------- ENSBTAP00000034797/1-711 ------CQDS LPLLLDHRKR ELQARQECYR ---------- ---------- 351 400 bmy_01716T0/1-753 SSWKVYAP-- -----ISSFE EVESDKKFAL IKTVPCADQG DR-------- ENSTTRP00000009785/1-845 --WKVYAPGF PGIVDVSSFE EVESDKKFAL IKRVPCADQG DSSGNRYLPG BACU001224/1-762 -GWKVYAP-- -----VSSFE EVESDKKFAL IKTVPGADQG DSRGNRYLPG ENSP00000314879/1-843 --WKIYAPGF PCMVDVNSFQ EMESDKKFAL TKTTTCVDQG DSSGNRYLPG ENSBTAP00000034797/1-711 --WKVYAPGF PRIIDVSSFE EMESDKKFAL TKTAPRADPG DSSGNQYLPG 401 450 bmy_01716T0/1-753 ---------- ---------- ---------- ----SLGMKL RGLLDRKGSW ENSTTRP00000009785/1-845 FPMKTDIPSL LSMEPNIRYS ATKTSSLLFN AIPASLGMKV LGLLDRKGSW BACU001224/1-762 FPMKTDIPSL LPTEPNICYS ATKTTSLLFN AIPASLGMKL RGLLDRKGSW ENSP00000314879/1-843 FPMKIDIPSL MYMEPNVRYS ATKTISLLFN AIPASLGMKL RGLLDRKGSW ENSBTAP00000034797/1-711 FPMKIDIPSL LHMEPNIRYS ATKTTSLLFN AIPASLGMKL RGLLDRKGSW 451 500 bmy_01716T0/1-753 KKLDDIRNIM CCHKTFTSEY VTEHWCADHF FGYQYLNGVN PVMLHCLSSL ENSTTRP00000009785/1-845 RKLDDIRNIM CCHKTFTSEY VTEH-CEDHF FRY-YLNGVN PVMLHCLSSL BACU001224/1-762 KKLDDIWNIM CCHKTFTSEY VTEHWCEDHF FGYQYLNGVN PVMLHCLSSL ENSP00000314879/1-843 KKLDDMQNIF WCHKTFTTKY VTEHWCEDHF FGYQYLNGVN PVMLHCISSL ENSBTAP00000034797/1-711 KKLDDIRNIM RCHKTLTSEY VREHWCEDQF FGYQYLNGVN PVMLHCLSSL 501 550 bmy_01716T0/1-753 PSKLPVTNDM VAPSLGPGTC LQTELE---- ---------- VADYWILAEV ENSTTRP00000009785/1-845 PSKLPVTSDM VAPSLGPGTC PQTELE---- -----RGHIF LADYWIPAEV BACU001224/1-762 PSKLPVTNDM VAPSLGPGTC LQTELEVGSV SLPLRGGRIF LADYWILAEV ENSP00000314879/1-843 PSKLPVTNDM VAPLLGQDTC LQTELE---- -----RGNIF LADYWILAEA ENSBTAP00000034797/1-711 PSKLPITNDM VAPSLGPGTC LQTELE---- -----RGNIF LADYWILAEV 551 600 bmy_01716T0/1-753 PVHCINGRPQ YAASPLCLLW LNPQGALVPL AIQLSQTPGP DSPIFLPTDS ENSTTRP00000009785/1-845 PIPCINGRPQ ---SPLCLLW LNPQGALVPL AIQLSQTSGP GSPIFLPTDS BACU001224/1-762 PVHCINGRPQ YAASPLCLLW LNPQGALGPL AIQLSQTPGP DSPIFLPTDS ENSP00000314879/1-843 PTHCLNGRQQ YVAAPLCLLW LSPQGALVPL AIQLSQTPGP DSPIFLPTDS ENSBTAP00000034797/1-711 PVHCINGHPQ FVAAPLCLLW LNPQGALVPL AIQLCQTPGP DSPIFLPTDT 601 650 bmy_01716T0/1-753 DWDWLLAKTW VRNSEFLVHE NNTHFLCTHL LCEAFTVATL RQLPLCHPIY ENSTTRP00000009785/1-845 DWDWLLAKTW VRNSEFLVHE NNTHFLCTHL LCEAFAVATL RQLPRCHPIY BACU001224/1-762 DWDWLLAKTW VCNSEFLVHE NNTHFLCTHL LCEAFTVATL RQLPLCHPIY ENSP00000314879/1-843 EWDWLLAKTW VRNSEFLVHE NNTHFLCTHL LCEAFAMATL RQLPLCHPIY ENSBTAP00000034797/1-711 DWDWLLAKTW VRNSEFLVHE NNTHFLCTHL LCEAFAMATL RQLPLCHPIY 651 700 bmy_01716T0/1-753 KLLLPHTRYT LQVNTIARAT LLNPEGLVDK VTSIGRQGLL YLMSTGLAHF ENSTTRP00000009785/1-845 KLLLPHTRYT LQVNTVA-AT LLKPEGLVDK VTSIGRQVLL YLMSTDLAHF BACU001224/1-762 KLLLPHTRYT LQVNTIARAT LLNPEGLVDK VTSIGRQGLL YLMSTGLAHF ENSP00000314879/1-843 KLLLPHTRYT LQVNTIARAT LLNPEGLVDQ VTSIGRQGLI YLMSTGLAHF ENSBTAP00000034797/1-711 KLLLPHTRYT LQVNTIARAT LLNPEGLVDK VTSIGRQGLL YLMSTGLAHF 701 750 bmy_01716T0/1-753 TYTNFCLPDS LRARGLLDIP NYHYRDDGLK IWAAIER--- ---------- ENSTTRP00000009785/1-845 TYTNFCLPDS LRARGILDTP NYHHRDDGLK VWAAIESFVS -IMAYYYPSD BACU001224/1-762 TYTNFCLPDS LRARGVLVIP NYHYRDDGLK IWAAIER--- ---------- ENSP00000314879/1-843 TYTNFCLPDS LRARGVLAIP NYHYRDDGLK IWAAIESFVS EIVGYYYPSD ENSBTAP00000034797/1-711 TYTNFCLPDS LRARGVLDIP NYHYRDDGLK IWAAIESFVS EIVGYYYTSD 751 800 bmy_01716T0/1-753 ---------- ---------- --------LP MQAVHPGELV KLLTAVIFNC ENSTTRP00000009785/1-845 ASV-QDSELQ AWVGEISAQ- FLGQESS-FP CRLCTPGELV KLLTAVIFNC BACU001224/1-762 ---------- ---------- --------LP TQAVHPGELV KLLTAVIFNC ENSP00000314879/1-843 ASVQQDSELQ AWTGEIFAQA FLGRESSGFP SRLCTPGEMV KFLTAIIFNC ENSBTAP00000034797/1-711 ASVQQDSELQ AWVGEIFAQA FLGRESSGFP RQLCTQGQLV KFLTAIIFNC 801 850 bmy_01716T0/1-753 SARHAAVNRG QHDFGAWMPN APSSMRQPPL QTKWTTTLKS HLDTLLEVNT ENSTTRP00000009785/1-845 SAQHAAVNSG QHDFGAWMPS AP-FMRQPPP QTKGTTTLKS YLDTLPEVNT BACU001224/1-762 SAQHAAVNVG S--------- ---------- ---------- ---------- ENSP00000314879/1-843 SAQHAAVNSG QHDFGAWMPN APSSMRQPPP QTKGTTTLKT YLDTLPEVNI ENSBTAP00000034797/1-711 SAQHAAVNSG QHDFGAWMPN APSSMRQPPP QTKGTTTLKS YLDTLPEVNT 851 900 bmy_01716T0/1-753 TCSNLLLFWL VSQEPKDQRP LGTYPDEHFT XERPLRSIAI FQSRLAQISR ENSTTRP00000009785/1-845 TCSNILLFWL ASQEPKDQRP LDTYPDEHFT EETPERSTAI FQSRLAQISR BACU001224/1-762 ---------- ---------P LGTYPDEHLT EERPLRSIAI FQSRLAQISR ENSP00000314879/1-843 SCNNLLLFWL VSQEPKDQRP LGTYPDEHFT EEAPRRSIAA FQSRLAQISR ENSBTAP00000034797/1-711 TCNNILLFWL VSQEPKDQRP LGTYPDEHFT EEAPRRSIAV FQNRLAQISR 901 950 bmy_01716T0/1-753 DI--RERNRG LELPHTYLDP PLIKNSVSI ENSTTRP00000009785/1-845 DI--RERSGG LELPY-YLDP PLIENSVSI BACU001224/1-762 DIRERERNRG LELPYIYLDP PLIENSVSI ENSP00000314879/1-843 DI--QERNQG LALPYTYLDP PLIENSVSI ENSBTAP00000034797/1-711 DI--QERNRG LALPYAYLDP PLIENSVSI