KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:44:58 2014 Check: 00 .. Name: ENSP00000419502/1-344 Len: 346 Check: 3624 Weight: 1.00 Name: ENSBTAP00000034930/1-345 Len: 346 Check: 5219 Weight: 1.00 Name: bmy_10717T0/1-241 Len: 346 Check: 316 Weight: 1.00 Name: BACU005236/1-251 Len: 346 Check: 5233 Weight: 1.00 // 1 50 ENSP00000419502/1-344 MGTRQTKGSL AERASPGAAP GPRRERPDFW ASLLLRAGDK AGR--AGAGM ENSBTAP00000034930/1-345 MGTRQTKGSL ADRAGPGAAP CLRRERPDFW ASLLLRAGDK AGRAGAGAGL bmy_10717T0/1-241 ---------- ---------- ---------- ---------- ---------- BACU005236/1-251 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000419502/1-344 PPYHRRVGMV QELLRMVRQG RREEAGTLLQ HLRQDLGMES TSLDDVLYRY ENSBTAP00000034930/1-345 PPYHRRVGMV QELLRMLHQG RREEAGTLLQ HLRQDLGMES TSLDDVLYRY bmy_10717T0/1-241 ---------- ---------- ---------- -------MES TSLDDVLYRY BACU005236/1-251 ---------- ---------- ---------- -------MES TSLDDVLYRY 101 150 ENSP00000419502/1-344 ASFRNLVDPI THDLIISLAR YIHCPKPEGD ALGAMEKLCR QLTYHLSPHS ENSBTAP00000034930/1-345 ASFRNLVDPI THDLIISLAR YIHCPKPEGD ALGAMEKLCR QLTYHLSPHS bmy_10717T0/1-241 ASFRNLVDPI THDLIISLAR YIHCPKPEGD ALGAMEKLCR QLTYHLSPHS BACU005236/1-251 ASFRNLVDPI THDLIISLAR YIHCPKPEGD ALGAMEKLCR QLTYHLSPHS 151 200 ENSP00000419502/1-344 QWRRHRGLVK RKPQACLKAV LAGSPPDNTV DLSGIPLTSR DLERVTSYLQ ENSBTAP00000034930/1-345 QWRRHRGLVK RKPQACLKAV LAGSPPDNTV DLSGIPLTSR DLERVTSYLQ bmy_10717T0/1-241 QWRRHRGL-- --------AV LAGSPPDNTV DLSGIPLTPR DLERVTGYLQ BACU005236/1-251 QWRRHRGLVK RKPQACLKAV LAGSPPDNTL DLSGIPLTPR DLERVTGYLQ 201 250 ENSP00000419502/1-344 RCGEQVDSVE LGFTGLTDDM VLQLLPALST LPRLTTLALN GNRLTRAVLR ENSBTAP00000034930/1-345 RCGEQVDSVE LGFTGLTDDM VLQLLPALST LPRMTTLALN GNRLTRALLR bmy_10717T0/1-241 RCGEQVDSVE LGFTGLTDDM VLQLLPALST LPRLTTLALN GNRLTRALLR BACU005236/1-251 RCGEQVDSVE LGFTGLTDDM VLQLLPALST LPRLTTLALN GNRLTRALLR 251 300 ENSP00000419502/1-344 DLTDILKDPS KFPNVTWIDL GNNVDIFSLP QPFLLSLRKR SPKQGHLPTI ENSBTAP00000034930/1-345 DLTDALRDPR KFPSVTWIDL GNNVDIFSLP QPFLLSLRKR SPKQGHLPTI bmy_10717T0/1-241 DLTDALKDPR KFPSVTWIDL GNNVDIFSLP QPFLLSLRKR SPKQGHLPTI BACU005236/1-251 DLTDALKDPS KFPSVTWIDL GNNVDIFSLP QPFLLSLRKR SPKQGHLPTI 301 350 ENSP00000419502/1-344 LELGEGPGSG EEVREGTVGQ EDPGGGPVAP AEDHHEGKET VAAAQT ENSBTAP00000034930/1-345 LELGEGPGSG HETQDETLGP EDPGGGPETP ARD-QEGRET VGATQT bmy_10717T0/1-241 LELGEGPGGG DEARDETAGQ EDPGG----- --D-QEGRET IGASQT BACU005236/1-251 LELGEGPGSG DEARDETVGQ EDPGG----- --D-QEGRET IGASET