KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:45:00 2014 Check: 00 .. Name: ENSP00000158762/1-740 Len: 1288 Check: 2472 Weight: 1.00 Name: ENSBTAP00000034967/1-745 Len: 1288 Check: 7419 Weight: 1.00 Name: ENSTTRP00000009280/1-706 Len: 1288 Check: 8028 Weight: 1.00 Name: bmy_01756T0/1-603 Len: 1288 Check: 8058 Weight: 1.00 Name: BACU001253/1-1249 Len: 1288 Check: 2131 Weight: 1.00 // 1 50 ENSP00000158762/1-740 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000034967/1-745 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009280/1-706 ---------- ---------- ---------- ---------- ---------- bmy_01756T0/1-603 ---------- ---------- ---------- ---------- ---------- BACU001253/1-1249 MEKQESLGTA RGLDGESPGG PTRGVPRGIG GVEVGAGLPS GVAMFHGSGP 51 100 ENSP00000158762/1-740 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000034967/1-745 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009280/1-706 ---------- ---------- ---------- ---------- ---------- bmy_01756T0/1-603 ---------- ---------- ---------- ---------- ---------- BACU001253/1-1249 PVHSGGTVIG SPGSRQPSGG TAVLSSGLNR HPGSGTHPGG LNPPFPGTNV 101 150 ENSP00000158762/1-740 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000034967/1-745 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009280/1-706 ---------- ---------- ---------- ---------- ---------- bmy_01756T0/1-603 ---------- ---------- ---------- ---------- ---------- BACU001253/1-1249 SGTSNLGSGG PGVYNSGYIP HSGSTCMHPD KPCEDRPRSI LKNSSSTVVH 151 200 ENSP00000158762/1-740 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000034967/1-745 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009280/1-706 ---------- ---------- ---------- ---------- ---------- bmy_01756T0/1-603 ---------- ---------- ---------- ---------- ---------- BACU001253/1-1249 KSLRAERRKK SQRWDEMNIL ATYHPADKDY GFMKVDEPRT PYHRLQDSDE 201 250 ENSP00000158762/1-740 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000034967/1-745 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009280/1-706 ---------- ---------- ---------- ---------- ---------- bmy_01756T0/1-603 ---------- ---------- ---------- ---------- ---------- BACU001253/1-1249 DLLAGTSHTM TPEDLAERFA TMDNFCPKVF LYSDNRSSGS SDNFSKTQSS 251 300 ENSP00000158762/1-740 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000034967/1-745 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009280/1-706 ---------- ---------- ---------- ---------- ---------- bmy_01756T0/1-603 ---------- ---------- ---------- ---------- ---------- BACU001253/1-1249 DFEKRRKAHY NEGKFLKAPK NLPLDNNKNS SARSVSMSSG SRGVMLASEP 301 350 ENSP00000158762/1-740 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000034967/1-745 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009280/1-706 ---------- ---------- ---------- ---------- ---------- bmy_01756T0/1-603 ---------- ---------- ---------- ---------- ---------- BACU001253/1-1249 RPVERGGARG LTGGVKDELG LVARNHILEV KGGHMTQIDL DDFSASPALR 351 400 ENSP00000158762/1-740 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000034967/1-745 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009280/1-706 ---------- ---------- ---------- ---------- ---------- bmy_01756T0/1-603 ---------- ---------- ---------- ---------- ---------- BACU001253/1-1249 NQSPASSTTV VLEKEIDLRR KEYCSKGRYL RCSPHPELEE DTEDEQQTSS 401 450 ENSP00000158762/1-740 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000034967/1-745 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009280/1-706 ---------- ---------- ---------- ---------- ---------- bmy_01756T0/1-603 ---------- ---------- ---------- ---------- ---------- BACU001253/1-1249 TSLNWVTENP ISTEVRLLDH TGSPSQDYKA TESSLKVTVM SSKPGTAPSS 451 500 ENSP00000158762/1-740 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000034967/1-745 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009280/1-706 ---------- ---------- ---------- ---------- ---------- bmy_01756T0/1-603 ---------- ---------- ---------- ---------- ---------- BACU001253/1-1249 KDSGSRAMSG WCQWLVSKGL NWQSTEGSER EPGSHPNSSN KNQHRCPRAH 501 550 ENSP00000158762/1-740 --------MT VKLDFEECLK DSPRFRASIE LVEAEVSELE TRLEKLLKLG ENSBTAP00000034967/1-745 --------MT VKLDFEECLK DSPRFRASVE LVEAEVSELE TRLEKLLKLG ENSTTRP00000009280/1-706 --------MT VKLDFEECLK DSPRFRASIE LVEAEVSELE TRLEKLLKLG bmy_01756T0/1-603 ---------- ---------- ---------- ---------- -----LLKLG BACU001253/1-1249 WPRSGQAEMT VKLDFEECLK DSPRFRASIE LVEAEVSELE TRLEKLLKLG 551 600 ENSP00000158762/1-740 TGLLESGRHY LAASRAFVVG ICDLARLGPP EPMMAECLEK FTVSLNHKLD ENSBTAP00000034967/1-745 NGLLESGRHY LAASRAFIVG ICDLAHLGPP EPMMAECLDK FTQSLSHKLD ENSTTRP00000009280/1-706 NGLLESGRHY LAASRAFIVG ICDLAHLGPP EPMMAECLDK FTQSLSHKLD bmy_01756T0/1-603 NGLLESGRHY LAASRAFIVG ICDLAHLGPP EPMMAECLDK FTQSLSHKLD BACU001253/1-1249 NGLLESGRHY LAASRAFIVG ICDLAHLGPP EPMMAECLDN FTQSLSHKLD 601 650 ENSP00000158762/1-740 SHAELLDATQ HTLQQQIQTL VKEGLRGFRE ARRDFWRGAE SLEAALTHNA ENSBTAP00000034967/1-745 SHAELLDATQ HTLQRQIQTL VKEGLRSFRE AGRDFWRGAE SLEAALTHNA ENSTTRP00000009280/1-706 SHAELLDATQ HTLQQQIQTL VKEGLRGFRE ARRDFWRGAE SLEAALTHNA bmy_01756T0/1-603 SHAELLDATQ HTLQQQIQTL VKEGLRGFRE ARRDFWRGAE SLEAALTHNA BACU001253/1-1249 SHAELLDATQ HTLQQQIQTL VKEGLRGFRE ARRDFWRGAE SLEAALTHNA 651 700 ENSP00000158762/1-740 EVPRRRAQEA EEAGAALRTA RAGYRGRALD YALQINVIED KRKFDIMEF- ENSBTAP00000034967/1-745 EVPRRRAQEA EEAGAALKVA RAGYRGRALD YALQINVIED KRKFDIMEF- ENSTTRP00000009280/1-706 EVPRRRAQEA EEAGAALKVA RAGYRGRALD YALQINVIED KRKFDIMEF- bmy_01756T0/1-603 EVPRRRAQEA EEAGAALKIA RAGYRARALD YALQINVIED KRKFDIMEFV BACU001253/1-1249 EVPRRRAQEA EEAGAALKIA RAGYRARALD YALQINVIED KRKFDIMEF- 701 750 ENSP00000158762/1-740 ---------- ---------- ---------- ----VLRLVE AQATHFQQGH ENSBTAP00000034967/1-745 ---------- ---------- ---------- ----VLRLVE AQATHFQQGH ENSTTRP00000009280/1-706 ---------- ---------- ---------- ----VLRLVE AQATHFQQGH bmy_01756T0/1-603 SRSGGEGREG RSLLMGAGGR GKERGLPPAH LVPQVLRLVE AQATHFQQGH BACU001253/1-1249 ---------- ---------- ---------- ----VLRLVE AQATHFQQGH 751 800 ENSP00000158762/1-740 EELSRLSQYR KELGAQLHQL VLNSAREKRD MEQRHVLLKQ KELGGEEPEP ENSBTAP00000034967/1-745 EELSQLAQYR KELGGQLHQL VLNSAREKRD MEQRHVLLKQ KELGGEEPEP ENSTTRP00000009280/1-706 EELSRLAQYR KELGGQLHRL VLNSAREKRD MEQRHVLLKQ KELGREEPEP bmy_01756T0/1-603 EELRRLAQYR KELGGQLHRL VLNSAREKRD MEQRHVLLKQ KELGGEEPEP BACU001253/1-1249 EELRRLAQYR KELGGQLHRL VLNSAREKRD MEQRHVLLKQ KELGGEEPEP 801 850 ENSP00000158762/1-740 SLREGPGGLV MEGHLFKRAS NAFKTWSRRW FTIQSNQLVY QKKYKDPVTV ENSBTAP00000034967/1-745 SLKEGPGGLV MEGHLFKRAS NAFKTWSRRW FTIQSNQLVY QKRYKDPVTV ENSTTRP00000009280/1-706 SLKEGPCGLV MEGHLFKRAS NAFKTWSRRW FTIQSNQLVY QKKHKDPVTV bmy_01756T0/1-603 SLREGPGGLV MEGHLFKRAS NAFKTWSRRW FTIQSNQLVY QKKHK----- BACU001253/1-1249 SLREGPGGLV MEGHLFKRAS NAFKTWSRRW FTIQSNQLVY QKKHKDPVTV 851 900 ENSP00000158762/1-740 VVDDLRLCTV KLCPDSERRF CFEVVSTSKS CLLQADSERL LQLWVSAVQS ENSBTAP00000034967/1-745 VVDDLRLCTV KLCPDSERRF CFEVVSPSKS CLLQADSERL MQLWVSAVQS ENSTTRP00000009280/1-706 VVDDLRLCTV KLCPDSERRF CFEVVSPSKS CLLQADSERL LQLWVSAVQS bmy_01756T0/1-603 ---------- ---------- ---------- ----ADSERL LQLWVSAVQS BACU001253/1-1249 VVDDLRLCTV KLCPDSERRF CFEVVSPSKS CLLQADSERL LQLWVSAVQS 901 950 ENSP00000158762/1-740 SIASAFSQAR LDDSPRGPGQ GSGHLAIGSA ATLGSGGMAR GREPGGVGHV ENSBTAP00000034967/1-745 SIATAFSQAR LDDSPRGLGQ GSGHLAISSA ATLGPGGLTR GREPGGVGHV ENSTTRP00000009280/1-706 SIATAFSQAR LDDSPRGPGQ GSGHLAMGSA ATLGSGGMSR GRDSGGVGHV bmy_01756T0/1-603 SIATAFNQAR LDDSPRGPGQ GSGHLAMGSA ATLGSGGMTR GRDSGGVGHV BACU001253/1-1249 SIATAFNQAR LDDSPRGPGQ GSGHLAMGSA ATLGSGGMTR GRDSGGVGHV 951 1000 ENSP00000158762/1-740 VAQVQSVDGN AQCCDCREPA PEWASINLGV TLCIQCSGIH RSLGVHFSKV ENSBTAP00000034967/1-745 AAQVQSVDGN AQCCDCREPA PEWASINLGV TLCIQCSGIH RSLGVHFSKV ENSTTRP00000009280/1-706 AAQVQSVDGN AQCCDCREPA PEWASINLGV TLCIQCSGIH RSLGVHFSKV bmy_01756T0/1-603 AAQVQSVDGN AQCCDCREPA PEWASINLGV TLCIQCSGIH RSLGVHFSKV BACU001253/1-1249 AAQVQSVDGN AQCCDCREPA PEWASINLGV TLCIQCSGIH RSLGVHFSKV 1001 1050 ENSP00000158762/1-740 RSLTLDSWEP ELVKLMCELG NVIINQIYEA RVEAMAVKKP GPSCSRQEKE ENSBTAP00000034967/1-745 RSLTLDSWEP ELVKLMCELG NVVINQIYEA RVEAMAVKKP GPSCSRQEKE ENSTTRP00000009280/1-706 RSLTLDSWEP ELVKLMCELG NVVMNQIYEA RVEAMAVKKP GPSCSRQEKE bmy_01756T0/1-603 RSLTLDSWEP ELVKLMCELG NVVMNQIYEA RVEAMAVKKP GPSCSRQEKE BACU001253/1-1249 RSLTLDSWEP ELVKLMCELG NVVMNQIYEA RVEAMAVKKP GPSCSRQEKE 1051 1100 ENSP00000158762/1-740 AWIHAKYVEK KFLTKLPEIR GRRGGRGRPR GQPPVPPKP- SIRPRPGSLR ENSBTAP00000034967/1-745 AWIHAKYVEK KFLTKLPEIR GRRGGRGPPR GHPPVPPKPG LIRPKPGSFR ENSTTRP00000009280/1-706 AWIHAKYVEK KFLTKLPEVR GRRGGRGPPR GQPPVPPKPG TIRPQPGSFR bmy_01756T0/1-603 AWIHAKYVEK KFLTKLPEIR GRRGGRGPPR GQPPIH---- -------SWF BACU001253/1-1249 AWIHAKYVEK KFLTKLPEIR GGKGGRGPPR GQPPVPPKPG TIRPQPGSFR 1101 1150 ENSP00000158762/1-740 SKPEPPSEDL GSLHPGALLF RASGHPPSLP TMADALAHGA DVNWVNGGQD ENSBTAP00000034967/1-745 SKPEPPSEDL QSLHPGALLF RAAGHPPSLP TMADALAHGA DVNWVNGGQE ENSTTRP00000009280/1-706 PK--PPSEDL GSLHPGALLF RAAGHPPSLP TMADALAHGA DVNWVHGGQE bmy_01756T0/1-603 PLTEPPSEDL GSLHPGALLF RAAGHPPSLP TMADALAHGA DVNWVHGGQE BACU001253/1-1249 PKPEPPSEDL GSLHPGALLF RAAGHPPSLP TMADALAHGA DVNWVHGGQE 1151 1200 ENSP00000158762/1-740 NATPLIQATA A----NSLLA CEFLLQNGAN VNQADSAGRG PLHHATILGH ENSBTAP00000034967/1-745 NATPLIQATA AVRVLNSLLA CEFLLQNGAN VNQVDNQGRG PLHHATILGH ENSTTRP00000009280/1-706 NATPLIQATA A----NSLLA CEFLLQNGAN VNQVDSHGRG PLHHATILGH bmy_01756T0/1-603 NATPLIQATA A----NSLLA CEFLLQNGAN VNQVDSHGRG PLHHATILGH BACU001253/1-1249 NATPLIQATA A----NSLLA CEFLLQNGAN VNQVDSHGRG PLHHATILGH 1201 1250 ENSP00000158762/1-740 TGLACLFLKR GADLGARDSE GRDPLTIAME TANADIVTLL RLAKMREAEA ENSBTAP00000034967/1-745 TGLACLFLKR GADLGVRDSE GRDPLTIAVE TANADIVTLL RLAKMREADA ENSTTRP00000009280/1-706 TGLACLFLKR GADLGARDSE GRDPLTIAVE TANADIVTLL RLAKMREVDA bmy_01756T0/1-603 TG-------- ---------- ---------- ---------- ---------- BACU001253/1-1249 TGLACLFLKR GADLGARDSE GRDPLTIAVE TANADIVTLL RLAKMREVDA 1251 1300 ENSP00000158762/1-740 AQGQAGDETY LDIFRDFSLM ASDDPEKLSR RSHDLHTL ENSBTAP00000034967/1-745 AQGQAGDETY LDIFRDFSLM ASDDPEKLSR RSHDLHTL ENSTTRP00000009280/1-706 AQGQA----- ---------- ---------- -------- bmy_01756T0/1-603 ---------- ---------- ---------- -------- BACU001253/1-1249 AQGQAGDETY LDIFRDFSLM ASDDPEKLSR RSHDLHTL