KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:45:00 2014 Check: 00 .. Name: ENSP00000370339/1-311 Len: 651 Check: 5159 Weight: 1.00 Name: ENSBTAP00000034978/1-301 Len: 651 Check: 8335 Weight: 1.00 Name: ENSTTRP00000009133/1-308 Len: 651 Check: 8802 Weight: 1.00 Name: bmy_01773T0/1-306 Len: 651 Check: 6454 Weight: 1.00 Name: BACU001269/1-602 Len: 651 Check: 8128 Weight: 1.00 // 1 50 ENSP00000370339/1-311 MAKDFQDIQQ LSSEENDHPF HQGEGPGTRR LNPRRGNPFL KGPPPAQPLA ENSBTAP00000034978/1-301 MARDFQDIQQ LDSEENDHQL GRGEGPGTCG HSPRRE-PFW KGMPPPQPLV ENSTTRP00000009133/1-308 MARDFQDIQH LGSEENDHQF CRGEGPGTRG RSPRREDPFW KGMPPPQPFV bmy_01773T0/1-306 MARDFQDIQQ LDSEENDHQL CRGT------ ---------- ---PPPQPFV BACU001269/1-602 MARDFQDIQQ LDSEENDHQL CRGT------ ---------- ---PPPQPFV 51 100 ENSP00000370339/1-311 -QRLCSMVCF SLLALSFNIL LLVVICVTGS QSEGHGGAQL QAELRSLKEA ENSBTAP00000034978/1-301 LQRLCSKFRL SLLVLVFNVL LLVAICVTGS QR-----AQL QGELQTLQEA ENSTTRP00000009133/1-308 LQRLCSQLRL SLLVLGFNIL LLVAVCVMGS QSKGHRGAQL QVELQTLKET bmy_01773T0/1-306 LQRLCSKLRL SLLVLGFNIL LLVAVCVMGS QR-----AQL QVELQTLKET BACU001269/1-602 LQRLCSKLRL SLLVLGFNIL LLVAVCVMGS QR-----AQL QVELQTLKET 101 150 ENSP00000370339/1-311 FSNFSSSTLT EVQAISTHGG SVGDKITSLG AKLEKQQQDL KA-------- ENSBTAP00000034978/1-301 FSNFSSGTLM DILNLSSHGG FAGDKVRLLE AKLGKQQQDL KA-------- ENSTTRP00000009133/1-308 FSNFSSSTLM DILALSSHGG SAGDKVTSLE AKLEKQQQDL KA-------- bmy_01773T0/1-306 FSNFSSSTLM EILALSSHGG SAGDKVTSLE AKLEKQQQDL KAAKCWSPGR BACU001269/1-602 FSNFSSSTLM EILALSSHGG SAGDKVTSLE AKLEKQQQDL KA-------- 151 200 ENSP00000370339/1-311 ---------- -----DHDAL LFHLKHFPVD LRFVACQMEL LHSNGSQRTC ENSBTAP00000034978/1-301 ---------- -----DHATL RLHLKHFPMD LRTLTCQMAH FQSNGTE--C ENSTTRP00000009133/1-308 ---------- -----DHATL LLHLKHFPMD MRTLACQLAF LQSNG-Q--C bmy_01773T0/1-306 WAHPLPTPLS SLWSLDHATL LLHLKHFPVD MRTLACQLAF LQSNGTE--C BACU001269/1-602 ---------- -----DHATL LLHLKHFPVD MRTLACQLAF LQSNGTE--C 201 250 ENSP00000370339/1-311 CPVNWVEHQG SCYWFSHSGK AWAEAEKYCQ LENAHLVVIN SWEEQKFIVQ ENSBTAP00000034978/1-301 CPVNWVDHDG SCYWFSRSGK PWLEAEKYCQ LENAHLVVIN SREEQKFIVQ ENSTTRP00000009133/1-308 CPVNWVDYEG SCYWFSRSGK PWPEAEKYCQ LEDAHLAVIN SREEQKFIAQ bmy_01773T0/1-306 CPVSWVDYEG SCYWFSRSGK PWPEAEKYCQ LEDAHLVVIN SREEQKFIAQ BACU001269/1-602 CPVSWVDYEG SCYWFSRSGK PWPEAEKYCQ LEDAHLVVIN SREEQKFIAQ 251 300 ENSP00000370339/1-311 HTNPFNTWIG LTDSDGSWKW VDGTDYRHNY KNWAVTQPDN WHGHELGGSE ENSBTAP00000034978/1-301 HTNPFRVWIG LTDSDGSWKW VDGTDYKHSY KNWDPAQPDD WRGHELGASE ENSTTRP00000009133/1-308 HTNPFQTWIG LTDSDGSWRW VDGTDYRHNY KNWAATQPDD WQGHELGGSE bmy_01773T0/1-306 HTNPFQTWIG LTDSDGSWRW VDGTDYRHNY KNWAATQPND WQGHELGGSE BACU001269/1-602 HTNPFQTWIG LTDSDGSWRW VDGTDYRHNY KNWAATQPDD WQGHELGGSE 301 350 ENSP00000370339/1-311 DCVEVQPDGR WNDDFCLQVY RW-------- ---------- ---------- ENSBTAP00000034978/1-301 DCAEIRWDGR WNDDFCQQVK RW-------- ---------- ---------- ENSTTRP00000009133/1-308 DCAEIRGDGR WNDDFCQQVK RW-------- ---------- ---------- bmy_01773T0/1-306 DCAEIRGDGR WNDDFCQQVK RW-------- ---------- ---------- BACU001269/1-602 DCAEIRGDGR WNDDFCQQVK RWPGRWPCLY FSSDSLRGRV GPNMSVKYED 351 400 ENSP00000370339/1-311 ---------- ---------- ---------- ---------- -------VCE ENSBTAP00000034978/1-301 ---------- ---------- ---------- ---------- -------VCE ENSTTRP00000009133/1-308 ---------- ---------- ---------- ---------- -------VCE bmy_01773T0/1-306 ---------- ---------- ---------- ---------- -------VCE BACU001269/1-602 LQYLESEKKS QGFTDGLPAL ETFLQRLLSG TRSFLLSLGL SLLLLVGVCV 401 450 ENSP00000370339/1-311 K--------- ---------- --RRNATGEV A--------- ---------- ENSBTAP00000034978/1-301 T--------- ---------- --KRNITM-- ---------- ---------- ENSTTRP00000009133/1-308 I--------- ---------- --KRNITIVS ---------- ---------- bmy_01773T0/1-306 I--------- ---------- --KRNITI-- ---------- ---------- BACU001269/1-602 IGSQNSKFQR DLATLRTTFS NFTSNATAEV QALKSQGGSL QEMITSLKAE 451 500 ENSP00000370339/1-311 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000034978/1-301 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009133/1-308 ---------- ---------- ---------- ---------- ---------- bmy_01773T0/1-306 ---------- ---------- ---------- ---------- ---------- BACU001269/1-602 VESHKQELQA ARSLNDKVLS LESSLENQLQ ELKAGYSEML LRVQQLVKNL 501 550 ENSP00000370339/1-311 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000034978/1-301 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009133/1-308 ---------- ---------- ---------- ---------- ---------- bmy_01773T0/1-306 ---------- ---------- ---------- ---------- ---------- BACU001269/1-602 HSLTCKMAAL KSNGSQNNCC PTSWLEHEGK CYWVSSSGKP WPEAEKYCQL 551 600 ENSP00000370339/1-311 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000034978/1-301 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009133/1-308 ---------- ---------- ---------- ---------- ---------- bmy_01773T0/1-306 ---------- ---------- ---------- ---------- ---------- BACU001269/1-602 EDAYLVVINS REEQDFVQAH IGSSYTWMGL SDLDGVWKWA DGTDYETNFK 601 650 ENSP00000370339/1-311 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000034978/1-301 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009133/1-308 ---------- ---------- ---------- ---------- ---------- bmy_01773T0/1-306 ---------- ---------- ---------- ---------- ---------- BACU001269/1-602 NWKPGQPDDW QGHGLGGGED CAHFHPDGKW NDDACQRPYH WICEAGLSKG 651 700 ENSP00000370339/1-311 - ENSBTAP00000034978/1-301 - ENSTTRP00000009133/1-308 - bmy_01773T0/1-306 - BACU001269/1-602 S