KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:45:03 2014 Check: 00 .. Name: ENSP00000421917/1-1292 Len: 1510 Check: 3124 Weight: 1.00 Name: ENSBTAP00000035035/1-1454 Len: 1510 Check: 3250 Weight: 1.00 Name: ENSTTRP00000008005/1-1437 Len: 1510 Check: 7145 Weight: 1.00 Name: bmy_18900T0/1-973 Len: 1510 Check: 3164 Weight: 1.00 Name: BACU013118/1-1292 Len: 1510 Check: 8151 Weight: 1.00 // 1 50 ENSP00000421917/1-1292 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000035035/1-1454 ---------- --------GL LRLREGSHAV TRRRPLPVRR EGCRV----S ENSTTRP00000008005/1-1437 ---------- ---------- ---------- --------RS EVCCC----C bmy_18900T0/1-973 ARRGLDPSRS PLPRPIYLNA LRQCPGAEGV HRGRPQLPPP PGTSSRKGPP BACU013118/1-1292 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000421917/1-1292 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000035035/1-1454 LAIGAAVTPV SLLSSSGFPG LDPRGPR--- ---------- ---------- ENSTTRP00000008005/1-1437 CCTGAAATPV CLLSSSGSPG LDPRGSR--- ---------- ---------- bmy_18900T0/1-973 LSPGWAVAPA QGVARSHAPP AASGAPRGSP GRVFLAVRGV LLLLLPLNRC BACU013118/1-1292 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000421917/1-1292 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000035035/1-1454 -------QAS LKSLRGGRVL PHPPSTTPYR DSEEGERERL SRLRAVCRRA ENSTTRP00000008005/1-1437 -------QAS VKSLQREPAL PHPPSTTPYH DSEEGEREGL SRLRAVCRRA bmy_18900T0/1-973 CGDARVPAAS VKSLRREPVL PHPPSTTPYH DSEEGEREGL SRLRAVCRRA BACU013118/1-1292 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000421917/1-1292 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000035035/1-1454 GPRGRGSSSP RDARASPRLH FLAATATTGA ASRRQRGARV RRPAPSSSPL ENSTTRP00000008005/1-1437 GPRGRGSSSP RDARASPRLH FLVATATTGA ASLRQRGARV RWPAPPPSPL bmy_18900T0/1-973 GPRGRGSSSP RDARASPRLH FLVATATTGA ASLRQRGARV RRPAPPSSPL BACU013118/1-1292 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000421917/1-1292 ---------- -------MDA SYDGTEVTVV MEEIEEAYCY TSPGPPKKKK ENSBTAP00000035035/1-1454 ARRHRECEPR GLHASPAMDA SYDGTEVTVV MEEIEEAYCY TSPGPPKKKK ENSTTRP00000008005/1-1437 AGRLRECEPR GLHASPAMDA SYDGTEVTVV MEEIEEAYCY TSPGPPKKKK bmy_18900T0/1-973 AWRLRECEPR GLHASPAMDA SYDGTEVTVV MEEIEEAYCY TSPGPPKKKK BACU013118/1-1292 ---------- -------MDA SYDGTEVTVV MEEIEEAYCY TSPGPPKKKK 251 300 ENSP00000421917/1-1292 KYKIHGEKTK KPRSAYLLYY YDIYLKVQQE LPHLPQSEIN KKISESWRLL ENSBTAP00000035035/1-1454 KYKIHGEKAK KPRSAYLLYY YDIYLKVQQE LPHLPQSEIN KKISESWRLL ENSTTRP00000008005/1-1437 KYKIHGEKAK KPRSAYLLYY YDIYLKVQQE LPHLPQSEIN KKISESWRLL bmy_18900T0/1-973 K--------- ---SAYLLYY YDIYLKVQQE LPHLPQSEIN KKISESWRLL BACU013118/1-1292 KYKIHGEKAK KPRSAYLLYY YDIYLKVQQE LPHLPQSEIN KKISESWRLL 301 350 ENSP00000421917/1-1292 SVAERSYYLE KAKLEKEGLD PNSKLSALTA VVPDIPGFRK ILPRSDYIII ENSBTAP00000035035/1-1454 SVAERSYYLE KAKLEKEGLD PNSKLSGLTA VVPDIPGFRK ILPRSDYIII ENSTTRP00000008005/1-1437 SVAERSYYLE KAKLEKEGLD PNSKLSALTA VVPDIPGFRK ILPRSDYIII bmy_18900T0/1-973 SVAERSYYLE KAKLEKEGLD PNSKLSALTA VVPDIPGFRK ILPRSDYIII BACU013118/1-1292 SVAERSYYLE KAKLEKEGLD PNSKLSALTA VVPDIPGFRK ILPRSDYIII 351 400 ENSP00000421917/1-1292 PKSSLQEDRS CPQLELCVAQ NQMSPKGPPL VSNTAPETVP SHAGMAEQCL ENSBTAP00000035035/1-1454 PKSSLQEERS CPQLELCVAQ NQMSPKGPSL VSNTALETVP GHAGMAEQCL ENSTTRP00000008005/1-1437 PKSSLQEERS CSQLELCVAQ NQMSPRGPSL VSNTALETVP SHAGMAEQCL bmy_18900T0/1-973 PKSSLQEERS CSQLELCVAQ NQMSPKGPSL VSNTALETVP SHAGMAEQCL BACU013118/1-1292 PKSSLQEERS CSHLELCVAQ NQMSPKGPSF LSNTALETVP SHAGMAEQCL 401 450 ENSP00000421917/1-1292 AVEALAEEVG ALTQSGAVQE IATSEILSQD VLLEDASLEV GESHQPYQTS ENSBTAP00000035035/1-1454 TVEALAEDVG ALAQPGAVQE IATSEILSQD VLLNEASLEV GESHQPYQTS ENSTTRP00000008005/1-1437 AVEALAEDVG ALAQPGAVQE ITTSEILGPD VLLNEASLEV GESHQPYQTS bmy_18900T0/1-973 AVEALAEDVG ALAQPGAVQE ITTSEILGPD VLLNEASLEV GESHQPYQTS BACU013118/1-1292 AVEALAEDVG AFAQPGAVQE ITTSEILGPD VLLNEASLEV GESHQPYQTS 451 500 ENSP00000421917/1-1292 LVIEETLVNG SPDLPTGSLA VPHPQVGESV SVVTVMRDSS ESSSSAPATQ ENSBTAP00000035035/1-1454 LVIEETLVNG SSDLTTGSLT VPHPQVGESM SVVTVMKDSG ESSSSAPATQ ENSTTRP00000008005/1-1437 LVIEETLVNG SPDLPTGSLA VPHPQVGESM SVVTVMRDSS EISSSAPAAQ bmy_18900T0/1-973 LVIEETLVNG SPDLPTGSLA VPHPQVGESM SVVTVMRDSS EISSSAPAAQ BACU013118/1-1292 LVIEETLVNG SPDLPTGSLA VPHPQVGESM SVVTVMRDSS EISSSAPAAQ 501 550 ENSP00000421917/1-1292 FIMLPLPAYS VVENPTSIKL TTTYTRRGHG TCTSPGCSFT YVTRHKPPKC ENSBTAP00000035035/1-1454 FIMLPLPAYS VVENPTSIKL TTTYTRRGHG TCTSPGCSFT YVTRHKPPKC ENSTTRP00000008005/1-1437 FIMLPLPAYS VVENPTSIKL TTTYTRRGHG TCTSPGCSFT YVTRHKPPKC bmy_18900T0/1-973 FIMLPLPAYS VVENPTSIKL TTTYTRRGHG TCTSPGCSFT YVTRHKPPKC BACU013118/1-1292 FIMLPLPAYS VVENPTSIKL TTTYTRRGHG TCTSPGCSFT YVTRHKPPKC 551 600 ENSP00000421917/1-1292 PTCGNFLGGK WIPKEKPAKV KVELASGVSS KGSVVKRNQQ PVTTEQNSSK ENSBTAP00000035035/1-1454 PTCGNFLGGK WIPKEKPAKV KVELTSGVSS KGSVVKRNQQ PVTTEQNSAK ENSTTRP00000008005/1-1437 PTCGNFLGGK WIPKEKPAKV KVELTSGVSS KGSVVKRNQQ PLTSEQNSAK bmy_18900T0/1-973 PTCGNFLGGK WIPK------ ---------- ---------Q PLTSEQNSAK BACU013118/1-1292 PTCGNFLGGK WIPKEKPAKV KVELTSGVSS KGSVVKRNQQ PLTSEQNSAK 601 650 ENSP00000421917/1-1292 ENASKLTLEN SEAVSQLLNV APPREVGEES EWEEVIISDA HVLVKEAPGN ENSBTAP00000035035/1-1454 EDASKLTLEN SEAVSQLLSV APPREVGEEN EWEEVIISDA HVLVKETPGN ENSTTRP00000008005/1-1437 ENSSKLTLEN SEAVSQLLSI APQRDVGEEN EWEEVIISDA HVLVKETPGN bmy_18900T0/1-973 ENSSKLTLEN SEAVSQLLSI APQRDVGEEN EWEEVIISDA HVLVKETPGN BACU013118/1-1292 ENSSKLTLEN SEAVSQLLSI APQRDVGEEN EWEEVIISDA HVLVKETPGN 651 700 ENSP00000421917/1-1292 CGTAVTKTPV VKSGVQPEVT LGTTDNDSPG ADVPTPSEGT STSSPLPAPK ENSBTAP00000035035/1-1454 HGAAVIKTPV VK----PEVS LGTTENDSPG LDVPPPAEGT STSGSLPAPK ENSTTRP00000008005/1-1437 RGTAVIKKPV VKSGVQREVS LGTTENDSPG LDVPPPAEGT STSNSLPAPK bmy_18900T0/1-973 RGTAVIKKPV VKSGVQREVS LGTTENDSPG LDVPPPAEGT STS------- BACU013118/1-1292 RGTAVIKKPV VKSGVQREVS LGTAENDTPG LDMPPPAEGT STSNSLPAPK 701 750 ENSP00000421917/1-1292 KPTGADLLTP GSRAPELKGR ARGKPSLLAA ARPMRAILPA PVNVGRGSSM ENSBTAP00000035035/1-1454 KPTGVDLLTP MPRAPELKGR ARGKPSLLAA ARPMRAILPA PANVGRGSSM ENSTTRP00000008005/1-1437 KPTGVDLLIP VPRAPELKGR ARGKPSLLAA ARPMRAILPA PANVGRGSSM bmy_18900T0/1-973 ----IDLLIP VPRAPELKGR ARGKPSLLAA ARPMRAILPA PANVGRGSSM BACU013118/1-1292 KPTGVDLLIP VPRASELKGR ARGKPSLLAA ARPMRAILPA PANVGRGSSM 751 800 ENSP00000421917/1-1292 GLPRARQAFS LSDKTPSVRT CGLKPSTLKQ LGQPIQQPSG PGEVK-LPSG ENSBTAP00000035035/1-1454 GLPRARQAFP LSDKTPSVRT CGLKPSTLKQ LGQPIQQPSS TGEVKLLPRS ENSTTRP00000008005/1-1437 GLPRARQAFP LSDKTPSVRT CGLKPSTLKQ LGQPIQQPSS TGEVK-LPNG bmy_18900T0/1-973 GLPRARQAFP LSDKTPSVRT CGLKPSTLKQ LGQPIQQPSS TGEVK-LPNG BACU013118/1-1292 GLPRARQAFP LSDKTPSVRT CGLKPSTLKQ LGQPIQQPSS TGEVK-LPNG 801 850 ENSP00000421917/1-1292 PSNRTSQVKV VEVKPDMFPP YKYSCTVTLD LGLATSRGRG KCKNPSCSYV ENSBTAP00000035035/1-1454 PGLRTPLLKV VEVKPDMFPP YKYSCTVTLD LGLATSRGRG KCKNPSCSYV ENSTTRP00000008005/1-1437 PANRTSQVKV VEVKPDTFPP YKYSCTVTLD LGLATSRGRG KCKNPSCSYV bmy_18900T0/1-973 PANRTSQVKV VEVKPDMFPP YKYSCTVTLD LGLATSRGRG KCKNPSCSYV BACU013118/1-1292 PANRTSQVKV VEVKPDMFPP YKYSCTVTLD LGLATSRGRG KCKNPSCSYV 851 900 ENSP00000421917/1-1292 YTNRHKPRIC PSCGVNLAKD RTEKTTKAIE VSSPLPDVLN ATEPLSTAQR ENSBTAP00000035035/1-1454 YTNRHKPRIC PSCGFNLAKD RTEKTTKVLE ASSPLPDVLS ATEPLSAAQR ENSTTRP00000008005/1-1437 YTNRHKPRIC PSCGFNLAKD RTEKTTKVLE ASSPLSDVLS ATEPLSAAQR bmy_18900T0/1-973 YTNRHKPRIC PSCGFNLAKD RTEKTTKVLE ANSPLSDVLS ATEPLSAAQR BACU013118/1-1292 YTNRHKPRIC PSCGFNLAKD RTEKTTKVLE ASSPLSDVLS ATEPLSAAQR 901 950 ENSP00000421917/1-1292 EIQRQSTLQL LRKVLQIPEN ESELAEVFAL IHELNSSRLI LSNVSEETVT ENSBTAP00000035035/1-1454 EIQRQSTLQL LRKVLQIPEN ESELAEVFSL IHELNSSRLV LSNVSEETVT ENSTTRP00000008005/1-1437 EIQRQSTLQL LRKVLQIPEN ESELAEVFAL IHELNSSRLV LSNVSEETVT bmy_18900T0/1-973 EIQRQSTLQL LRKILQIPEN ESELAEVFAL IHELNSSRLV LSNVSEETVT BACU013118/1-1292 EIQRQSTLQL LRKVLQIPEN ESELAEVFTL IHELNSSRLV LSNVSEETVT 951 1000 ENSP00000421917/1-1292 IEQTSWSNYY ESPSTQCLLC SSPLFKGGQN SLAGPQECWL LTASRLQTVT ENSBTAP00000035035/1-1454 IEQTSWSNYY ESPSTQCLLC SSPLFKGGQN SLAGPQECWL LTASWLQVVT ENSTTRP00000008005/1-1437 IEQTSWSNYY ESPSTQCLLC SSPLFKGGQN SLAGPQECWL LTASWLQVVT bmy_18900T0/1-973 IEQTSWSNYY ESPSTQCLLC SSPLFKGGQN SLAGPQECWL LTASWLQVVT BACU013118/1-1292 IEQTSWSNYY ESPSTQCLLC SSPLFKGGQN SLAGPQECWL LTASWLQVVT 1001 1050 ENSP00000421917/1-1292 AQVKMCLNPH CLALHSFIDI YTGLFNVGNK LLVSLDLLFA IRNQIKLGED ENSBTAP00000035035/1-1454 AQVKMCLNPH CLALHSFMDI YTGLFNVGNK LLVSLDLLFA IRNQIKLGED ENSTTRP00000008005/1-1437 AQVKMCLNPH CLALHSFMDI YTGLFNVGNK LLVSLDLLFA IRNQIKLGED bmy_18900T0/1-973 AQVKMCLNPH CLALHSFMDI YT-------- ---------- ---------- BACU013118/1-1292 AQVKMCLNPH CLALHSFMDI YTGLFNVGNK LLVSLDLLFA IRNHIKLGED 1051 1100 ENSP00000421917/1-1292 PRVSINVVLK SVQEQTEKTL TSEELSQLQE LLCNGYWAFE CLTVRDYNDM ENSBTAP00000035035/1-1454 PRVSISTLLK SVQEQTEKTL TSEELSQLQE LLCNGYWAFE CLTVRDYNDM ENSTTRP00000008005/1-1437 PRVSISTLLK SVQDQTEKTL TSEELSQLQE LLCNGYWAFE CLTVRDYNDM bmy_18900T0/1-973 ---------- ---------- ---------- ---------- ---------- BACU013118/1-1292 PRVSISTLLK SVQDQTEKTL TSEELSQLQE LLCNGYWAFE CLTVRDYNDM 1101 1150 ENSP00000421917/1-1292 ICGICGVAPK VEMAQRSEEN VLALKSVEFT WPEFLGSNEV NVEDFWATME ENSBTAP00000035035/1-1454 ICGICGVAPK VEVAQRSENN VLALKSVEFT WPDFLASSEV NVEDFWATME ENSTTRP00000008005/1-1437 ICGICGVAPK VEVAQRSEEN VLALKSVEFT WPDFLASSEV NVEDFWATME bmy_18900T0/1-973 ---------- ---------- ---------- ---------- ---------- BACU013118/1-1292 ICGICGVAPK VEVAQRSEEN VLALKSVEFT WPDFLASSEV NVEDFWATME 1151 1200 ENSP00000421917/1-1292 TEVIEQVAFP ASIPITKFDA SVIAPFFPPL MRGAVVVNTE KDKNLDVQPV ENSBTAP00000035035/1-1454 TEVIEQVAFP ASIPITRFDA SVIAPFFPPL MRGAVVVNTE KDKSLDVQPV ENSTTRP00000008005/1-1437 TEVIEQVAFP ASIPITKFDA SVIAPFFPPL MRGAVVVNTE KDKNLDVQPV bmy_18900T0/1-973 ---------- ---------- ---------- ---------- ---------- BACU013118/1-1292 TEVIEQVAFP ASIPITKFDA SVIAPFFPPL MRGAVVVNTE KDKNLDVQPV 1201 1250 ENSP00000421917/1-1292 PGSGSALVRL LQEGTCKLDE IGSYSEEKLQ HLLRQCGIPF GAEDSKDQLC ENSBTAP00000035035/1-1454 PGNGSALVRL LQEGACKLEE IGSYSEEELQ CLLRQCGIPF RAEDSKEQLC ENSTTRP00000008005/1-1437 PGNGGALVRL LQEGTCKLEE IGSYSEEELH CLLRQCGIPF GAEDSRDQLC bmy_18900T0/1-973 ---------- ---------- ---------- ---------- ---------- BACU013118/1-1292 PGNGSALVRL LQEGACKLEE IGSYSEKELH CLLRQCGIPF GAEDSKDQLC 1251 1300 ENSP00000421917/1-1292 FSLLALYESV QNGARAIRPP RHFTGGKIYK VCPHQVVCGS KYLVRGESAR ENSBTAP00000035035/1-1454 FSLLALYESV QNGARARQPP PHLTGGKVYK VCPHQVVCGS KYLVRGESAL ENSTTRP00000008005/1-1437 FSLLALYESV QNGARARQPP PHLTGGKIYK MCPHQXXXXX XXXXXXXXXX bmy_18900T0/1-973 ---------- ---------- ---------- ---------- ---------- BACU013118/1-1292 FSLLALYESV QNGARARQPP PHLTGGKIYK MCPHQVVCGS KYLVRGESAL 1301 1350 ENSP00000421917/1-1292 DHVDLLASSR HWPPVYVVDM ATSVALCADL CYPELTNQMW GRNQGCFSSP ENSBTAP00000035035/1-1454 DHVDLLVSSR HWPPVYVVDM ATPVALCADL CYPDLTNQMW GRNQGCFSSP ENSTTRP00000008005/1-1437 XXXXXXXXXX XXXXXXXXXX XXXXXXXADL CYPELTNQMW GRNQGCFSSP bmy_18900T0/1-973 ---------- ---------- ---------- ---------- ---------- BACU013118/1-1292 DHVDLLVSSR HWPPVYVVDM ATPVALCADL CYPELTNQMW GRNQGCFSSP 1351 1400 ENSP00000421917/1-1292 TEPPVSVSCP ELLDQHYTVD MTETEHSIQH PVTKTATRRI VHAGLQPNPG ENSBTAP00000035035/1-1454 TEPPVSVSCP ELLDQHYTVD MTEAEHSVQH PVTKTATRRI VHAGTQSSPG ENSTTRP00000008005/1-1437 TEPPVSVSCP ELLDQHYTVD MSEAEHSVQH PVTKTATRRI VHAGTQPSPG bmy_18900T0/1-973 ---------- ---------- ---------- ---------- ---------- BACU013118/1-1292 TEPPVSVSCP ELLDQHYTVD MTEAEHSVQH PVTKTATRRI VHAGTQPSPG 1401 1450 ENSP00000421917/1-1292 DPSAGHHSLA LCPELAPYAT ILASIVDSKP NGVRQRPIAF DNATHYYLYN ENSBTAP00000035035/1-1454 DPSAGHHSLA LCPELAPYAA ILASFADSKP NSVRQRPIAF DNATHYYLYN ENSTTRP00000008005/1-1437 DPSAGHHSLA LCPELAPYAA ILSSFADSKP NSVRQRPIAF DNATHYYLYN bmy_18900T0/1-973 ---------- ---------- ---------- ---------- ---------- BACU013118/1-1292 DPSAGHHSLA LCPELVPYAA ILSSFADSKP NSVRQRPIAF DNATHYYLYN 1451 1500 ENSP00000421917/1-1292 RLMDFLTSRE IVNRQIHDIV QSCQPGEVVI RDTLYRLGVA QIKTETEEEG ENSBTAP00000035035/1-1454 RLMDFLTSRE IVNRQIHDIV QSCQPGEVVI RDTLYRLGVA QIKTEVEEDG ENSTTRP00000008005/1-1437 RLMDFLTSRE IVNRQIHDIV QSCQPGEVVI RDTLYRLGVA QIKTETEEDA bmy_18900T0/1-973 ---------- ---------- ---------- ---------- ---------- BACU013118/1-1292 RLMDFLTSRE IVNRQIHDIV QSCQPGEVVI RDTLYRLGVA QIKTETEEDA 1501 1550 ENSP00000421917/1-1292 EEEEVAAVAE ENSBTAP00000035035/1-1454 EEEDGATATE ENSTTRP00000008005/1-1437 EEEEVATAAE bmy_18900T0/1-973 ---------- BACU013118/1-1292 EEEEVATAAE