KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:45:04 2014 Check: 00 .. Name: ENSBTAP00000035058/1-356 Len: 511 Check: 9607 Weight: 1.00 Name: ENSP00000343665/1-308 Len: 511 Check: 8890 Weight: 1.00 Name: ENSTTRP00000002864/1-305 Len: 511 Check: 2302 Weight: 1.00 Name: bmy_00165T0/1-511 Len: 511 Check: 1729 Weight: 1.00 Name: BACU010466/1-339 Len: 511 Check: 795 Weight: 1.00 // 1 50 ENSBTAP00000035058/1-356 ---------- ---------- ---------- ---------- ---------- ENSP00000343665/1-308 -MTLRRRGEK ATISIQEHMA IDVCPGPIRP IKQISDY--- FPRFPRGLPP ENSTTRP00000002864/1-305 -MTLRRRGEK ATISIQEHMA IDVCPGPIRP IKQISDY--- FPRFPRGLPP bmy_00165T0/1-511 MCTSRGRDLP LRSAPTHNPG LQAGNHMRKA TAAVCDHARG WQLHPITAAP BACU010466/1-339 ---------- ---------- ---------- ---------- ---MRTGLAE 51 100 ENSBTAP00000035058/1-356 ---------- ---------- ---------- --XAPARPA- ---------- ENSP00000343665/1-308 DAGPRA---- ---------- --------AA PPDAPARPA- ---------- ENSTTRP00000002864/1-305 DAGPRA---- ---------- --------AA PPDAPARPA- ---------- bmy_00165T0/1-511 SAQPLGITRC LSEAGSSSTR AQLAPHSLPR APEGPGRPGT RSPNAAETDP BACU010466/1-339 ETQ------- ---------- ---------R PTGRGDKPG- ---------- 101 150 ENSBTAP00000035058/1-356 ---------- ---------- -AASAGRRS- ---------- ----PSDGAR ENSP00000343665/1-308 ---------- ---------- -VAGAGRRS- ---------- ----PSDGAR ENSTTRP00000002864/1-305 ---------- ---------- -AASAGRRS- ---------- ----PSDGAR bmy_00165T0/1-511 SAFSHTPGTV KRQGELRCGA LAGGCTRRTG TPLAERAAHV APPWTSHGPR BACU010466/1-339 ---------- ---------- -TQSCCRIP- ---------- ----PLDRG- 151 200 ENSBTAP00000035058/1-356 DDDEDVD--- ---QLFGAYG SSPGPGPAPS PGRPPAK--- ---------- ENSP00000343665/1-308 EDDEDVD--- ---QLFGAYG SSPGPSPGPS PARPPAK--- ---------- ENSTTRP00000002864/1-305 DDDEDVD--- ---QLFGAYG ASPG--PGRS TARPPAK--- ---------- bmy_00165T0/1-511 GTAQGSGAHC PPLTLSSPLA VSGGDGPNPP APEPPSQGWG GSVCSRRSAG BACU010466/1-339 ---------- ---------- ------PAPS CSLALEQ--- ---------- 201 250 ENSBTAP00000035058/1-356 -------PPE EELDADGYES DDCTALGTLD FSLLYDQENN ALHCTIAKAK ENSP00000343665/1-308 -------PPE DEPDADGYES DDCTALGTLD FSLLYDQENN ALHCTITKAK ENSTTRP00000002864/1-305 -------LPE DEPDADGYES DDCTALGTLD FSLLYDQENN ALHCTISKAK bmy_00165T0/1-511 GSQHSTVTVA PRPAAQGWVT LLHPALGTLD FSLLYDQENN ALHCTISKAK BACU010466/1-339 -------RAS TGPAA----- ----ALGTLD FSLLYDQENN ALHCTISKAK 251 300 ENSBTAP00000035058/1-356 GLKPMDHNGL ADPYVKLHLL PGASKANKLR TKTLRNTLNP TWNETLTYYG ENSP00000343665/1-308 GLKPMDHNGL ADPYVKLHLL PGASKANKLR TKTLRNTLNP TWNETLTYYG ENSTTRP00000002864/1-305 VLKPM-HNGL ADPYVKLHLL PGASKANKLR TKTLRNTLNP TWNETLTYYG bmy_00165T0/1-511 GLKPMDHNGL ADPYVKLHLL PGASKANKLR TKTLRNTLNP TWNETLTYYG BACU010466/1-339 GLKPMDHNGL ADPYVKLHLL PGASKANKLR TKTLRNTLNP TWNETLTYYG 301 350 ENSBTAP00000035058/1-356 ITDEDMIRKT LRISVCDEDK FRHNEFIGET RVPLKKLKPN HTKTFSICLE ENSP00000343665/1-308 ITDEDMIRKT LRISVCDEDK FRHNEFIGET RVPLKKLKPN HTKTFSICLE ENSTTRP00000002864/1-305 ITDEDMIRKT LRISVCDEDK FRHNEFIGET RVPLKKLKPN HTKTFSICLE bmy_00165T0/1-511 ITDEDMIRKT LRISVCDEDK FRHNEFIGET RVPLKKLKPN HTKTFSICLE BACU010466/1-339 ITDEDMIRKT LRISVCDEDK FRHNEFIGET RVPLKKLKPN HTKTFSICLE 351 400 ENSBTAP00000035058/1-356 KQLPVDKTED KSLEERGRIL VSLKYSSQKQ GLLVGIVRCA HLAAMDANGY ENSP00000343665/1-308 KQLPVDKTED KSLEERGRIL ISLKYSSQKQ GLLVGIVRCA HLAAMDANGY ENSTTRP00000002864/1-305 KQLPVDKTED KSLEERGRIL ISLKYSSQKQ GLLVGIVRCA HLAAMDANGY bmy_00165T0/1-511 KQLPVDKTED KSLEERGRIL ISLKYSSQKQ GLLVGIVRCA HLAAMDANGY BACU010466/1-339 KQLPVDKTED KSLEERGRIL ISLKYSSQKQ GLLVGIVRCA HLAAMDANGY 401 450 ENSBTAP00000035058/1-356 SDPYVKTYLK PDVDKKSKHK TAVKKKTLNP EFNEEFCYEI KHGDLAKKTL ENSP00000343665/1-308 SDPYVKT--- ---------- ---------- ---------- ---------- ENSTTRP00000002864/1-305 SDPYVKT--- ---------- ---------- ---------- ---------- bmy_00165T0/1-511 SDPYVKTYLK PDVDKKSKHK TAVKKKTLNP EFNEEFCYEI KHGDLAKKTL BACU010466/1-339 SDPYVKTYLK PDVDKKSKHK TAVKKKTLNP EFNEEFCYEI KHGDLAKKTL 451 500 ENSBTAP00000035058/1-356 EITVWDYDIG KSNDFIGGVV LGINAKGERL KHWFDCLKNK DKRIERWHTL ENSP00000343665/1-308 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002864/1-305 ---------- ---------- ---------- ---------- ---------- bmy_00165T0/1-511 EITVWDYDIG KSNDFIGGVV LGINAKGERL KHWFDCLKNK DKRIERWHTL BACU010466/1-339 EITVWDYDIG KSNDFIGGVV LGINAKGERL KHWFDCLKNK DKRIERWHTL 501 550 ENSBTAP00000035058/1-356 TNELPGAVLS D ENSP00000343665/1-308 ---------- - ENSTTRP00000002864/1-305 ---------- - bmy_00165T0/1-511 TNELPGAVLS D BACU010466/1-339 TNELPGAVLS D