KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:45:06 2014 Check: 00 .. Name: ENSBTAP00000035070/1-1499 Len: 1636 Check: 4055 Weight: 1.00 Name: ENSTTRP00000001055/1-1496 Len: 1636 Check: 2852 Weight: 1.00 Name: bmy_11591T0/1-1387 Len: 1636 Check: 9074 Weight: 1.00 Name: BACU007872/1-1188 Len: 1636 Check: 2080 Weight: 1.00 // 1 50 ENSBTAP00000035070/1-1499 ERRSSRARRH AAMEREPAAA AEEPGPPGRR RRREGRMRTV CSNLQPPPGA ENSTTRP00000001055/1-1496 ---------- ---MEWELAA AEEPGTPGRR RRREVRTRTV RSNLLPPPGA bmy_11591T0/1-1387 ---------- ---------- ---------- --------MQ SSNLHPETSI BACU007872/1-1188 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000035070/1-1499 EEP---AGKG APRRRLRGGA QHLADNRLKT TKYTLLSFLP KNLFEQFHRL ENSTTRP00000001055/1-1496 EDPLASAAKG ARRRRRCGGA QHLADNRLKT TKYTLLSFLP KNLFEQFHRL bmy_11591T0/1-1387 GAWVRNGQEG PR-------- ---------- ---------- ---------- BACU007872/1-1188 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000035070/1-1499 ANVYFVFIAL LNFVPAVNAF QPGLALAPVL FILAVTAFKD LWEDYSRHRS ENSTTRP00000001055/1-1496 ANVYFVFIAL LNFVPAVNAF QPGLALAPVL FILAVTXXXX XXXXXXXXXX bmy_11591T0/1-1387 ---------- ---------- ---------- ---------- ---------- BACU007872/1-1188 ---------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000035070/1-1499 DHEINHLGCL VFSREEEQYV NRFWKEIRVG DFVRLRCNET IPADILLLSS ENSTTRP00000001055/1-1496 XXXXXXXXXX XXXXEEKQYV NRFWKEIRVG DFVRLRCNEI IPADILLLCS bmy_11591T0/1-1387 ---------- ---------- ---------- ---------- -------LVA BACU007872/1-1188 ---------- ---------- ---------- ---------- ---------- 201 250 ENSBTAP00000035070/1-1499 SDPDGLCHIE TANLDGETNL KRRQVVRGFS ELVSEFNPLT FTSIIECEKP ENSTTRP00000001055/1-1496 SDPDGLCHIE TANLDGETNL KRRQVVRGFS ELVSEFNPLT FTSVIECEKP bmy_11591T0/1-1387 SKPQGV---- ---------- ---------- ---------- ---------- BACU007872/1-1188 ---------- ---------- ---------- ---------- ---------- 251 300 ENSBTAP00000035070/1-1499 NNDLTRFRGC IIHDNGKKAG LYKENLLLRG CTLRNTEAVV GIVIYAGHET ENSTTRP00000001055/1-1496 NNDLTRFRGC IIHNNGKKAG LYKENLLLRG CTIRNTEAVV GIVIYAGHET bmy_11591T0/1-1387 ------HRRL HIHDNGKKAG LYKENLLLRG CTIRNTEAVV GIVIYAGHET BACU007872/1-1188 ---------- ---------- ---------- ---------- ---------- 301 350 ENSBTAP00000035070/1-1499 KALLNNSGPR YKRSRLERQM NCDVLWCVLL LICMSLFSAI GHGLWVQRYQ ENSTTRP00000001055/1-1496 KALLNNSGPR YKRSRLERQM NCDVLWCVLL LVCMSLFSAV GHGLWVQRYQ bmy_11591T0/1-1387 KALLNNSGPR YKRSRLERQM NCDVLWCVLL LVCMSLFSAV GHGLWVQRYQ BACU007872/1-1188 ---------- ---------M NCDVLWCVLL LVCMSLFSAV GHGLWVQRYQ 351 400 ENSBTAP00000035070/1-1499 EKKSLFDVPE SDGTSLSPVP AAVYSFLTMI IVLQVLIPIS LYVSIEIVKV ENSTTRP00000001055/1-1496 EKKSLFDVPE SDGTSLSPVT AAVYSFLTMI IVLQVLIPIS LYVSIEIVKV bmy_11591T0/1-1387 EKKSLFDVPE SDGTSLSPVT AAVYSFLTMI IVLQVLIPIS LYVSIEIVKV BACU007872/1-1188 EKKSLFDVPE SDGTSLSPVT AAVYSFLTMI IVLQVLIPIS LYVSIEIVKV 401 450 ENSBTAP00000035070/1-1499 CQVYFINQDI ELYDEETDSQ LQCRALNITE DLGQIQYIFS DKTGTLTENK ENSTTRP00000001055/1-1496 CQVYFINQDI ELYDEETDSQ LQCRALNITE DLGQIQYIFS DKTGTLTENK bmy_11591T0/1-1387 CQVYFINQDI ELYDEETDSQ LQCRALNITE DLGQIQYIFS DKTGTLTENK BACU007872/1-1188 CQVYFINQDI ELYDEETDSQ LQCRALNITE DLGQIQYIFS DKTGTLTENK 451 500 ENSBTAP00000035070/1-1499 MVFRRCTVSG IEYSHDANAQ RLARYQEADS EEEEVVPRGG SLPLRGGTGG ENSTTRP00000001055/1-1496 MVFRRCTVSG IEYSHDANAQ RLARYQEADS EEEEVVPRGG SLPQRSSTGS bmy_11591T0/1-1387 MVFRRCTVSG IEYSHDANAR RLARYQEADS EEEEVVPRGG SLPQRSSTGS BACU007872/1-1188 MVFRRCTVSG IEYSHDANAR RLARYQEADS EEEEVVPRGG SLPQHSSTGS 501 550 ENSBTAP00000035070/1-1499 HPSARAAHQS QSSRAHRRTG SRAEARRVSM LTELTAFSSP MEKDVTPDPK ENSTTRP00000001055/1-1496 HQSIRVVHRS QSTRSHRRTS SRAEAKRASM LSKHTAFSSP MEKDITPDPK bmy_11591T0/1-1387 HQSIRVVHRS QSTRSHRRTS SRAEAKRASM LSKHTAFSSP MEKDITPDPK BACU007872/1-1188 HQSIRVVHRS QSTRSHRRTS SRAEAKRASM LSKHTAFSSP MEKDITPDPK 551 600 ENSBTAP00000035070/1-1499 LLEKVHKCGR CLASARHQEH PLDHLSPELS DIFDFFIALT ICNTVVVTSP ENSTTRP00000001055/1-1496 LLEKVSECDR CLAFARHQEH PLAHLSPELS DIFDFFIALT ICNTVVVTSP bmy_11591T0/1-1387 LLEKVSECDR YLAFARHQEH PLAHLSPELS DIFDFFIALT ICNT------ BACU007872/1-1188 LLEKVSECDR YLAFARHQEH PLAHLSPELS DIFDFFIALT ICNTVVVTSP 601 650 ENSBTAP00000035070/1-1499 DQPRQKVRVR FELKSPVKTI EDFLRRFTPS RLTLGGSSVG SASMAAKSAP ENSTTRP00000001055/1-1496 DQPRQKVRVR FELKSPVKTI EDFLRRFTPS RLASGCSSIG NMA-TNKSVH bmy_11591T0/1-1387 ------VRVR FELKSPVKTI EDFLRRFTPS RLASGCSSIG SMA-TNKSAH BACU007872/1-1188 DQPRQKVRVR FELKSPVKTI EDFLRRFTPS RLASGCSSIG SMA-TNKSAH 651 700 ENSBTAP00000035070/1-1499 KASLLSTMAN DGALLRLEER LGPGAPCLAS NGYSSAADSW AAEQSATGPE ENSTTRP00000001055/1-1496 KSSLLSTLAN NGTLFRLEER LRPPAPGLAS NGYSSGADGW APECSAQEPE bmy_11591T0/1-1387 KSSLLSTLAT DGTLFRLEER LGPPAPALTS NGYSSGADGW APECSAQEPE BACU007872/1-1188 KSSLLSTLAT DGTLFRLEER LGPPAPALTS NGYSSGADGW APECSAQEPK 701 750 ENSBTAP00000035070/1-1499 PGAELRYEAE SPDEAALVHA ARAYSCALVG RLHDQVSVEL PHLGRLTFEL ENSTTRP00000001055/1-1496 PERELRYEAE SPDEAALVYA ARAYSFALVD RLHDQVSVEL PHLGRLTFEL bmy_11591T0/1-1387 PERELRYEAE SPDEAALVYA ARAYSCALVD RLHDQVSVEL PHLGRLTFEL BACU007872/1-1188 PERELRYEAE SPDEAALVYA ARAYSCALVD RLHDQVSVEL PHLGRLTFEL 751 800 ENSBTAP00000035070/1-1499 LHTLGFDSIR KRMSVVIRHP LTDEINVYTK GADSVVMDLL LPCSTDDARG ENSTTRP00000001055/1-1496 LHTLGFDSIR KRMSVVIRHP LTDEINVYTK GADSVVMDLL LPCSTDDARG bmy_11591T0/1-1387 LHTLGFDSIR KRMSVVIRHP LTDEINVYTK GADSVVMDLL LPCSTDDARG BACU007872/1-1188 LHTLGFDSIR KRMSVVIRHP LTDEINVYTK GADSVVMDLL LPCSTDDARG 801 850 ENSBTAP00000035070/1-1499 RHQMKIRSKT QNYLNLYAVE GLRTLCIAKR VLSKEEYACW LQSHLEAESA ENSTTRP00000001055/1-1496 RHQKKIWSKT QNYLNLYAVE GLRTLCIAKR VLSKEEYACW LQSHLEAESA bmy_11591T0/1-1387 RHQKKIRSKT QNYLNLYAVE GLRTLCIAKR ---------- --SHLEAESA BACU007872/1-1188 RYQKKIRSKT QNYLNLYAVE GLRTLCIAKR VLSKEEYACW LKSHLEAESA 851 900 ENSBTAP00000035070/1-1499 VDNREELLFQ SAIRLETNLH LLGATGIEDR LQDGVPETIA KLRQAGLQIW ENSTTRP00000001055/1-1496 LDNREELLFQ SALRLERNLH LLXXXXXXXX XXXXXXXXXX XXXXXGLQIW bmy_11591T0/1-1387 LDNREELLFQ SAIRLETNLH LLGATGIEDR LQDGVPETIA KLRQAGLQIW BACU007872/1-1188 LDNREELLFQ SAIRLETNLH LLGATGIEDR LQDGVPETIA KLRQAGLQIW 901 950 ENSBTAP00000035070/1-1499 VLTGDKQETA VNIAHACKLL DHDEEVITLN AESQEACEAL LDQCLRYVQS ENSTTRP00000001055/1-1496 VLTGDKQETA INIAYACKLL DHDEEVITLN AESQEACAAL LDQCLHYVQS bmy_11591T0/1-1387 VLTGDKQETA INIAYACKLL DHDEEVITLN AESQEACAAL LDQCLHYVQS BACU007872/1-1188 VLTGDKQETA INIAYACKLL DHDEEVITLN AESQEACAAL LDQCLHYVQS 951 1000 ENSBTAP00000035070/1-1499 RSPQ----RT AGSLSVGFAP LCPPSEATAS G--PSLVIDG RSLAYALQKN ENSTTRP00000001055/1-1496 RSPHSAADKT AGGMSVGFSP LCPPSAAAMS GPSPSLVIDG RSLAYALEKN bmy_11591T0/1-1387 RSPHSAADKT AGGVSVGFSP LCPPSAAAIS GPSPSLVIDG RSLAYALEKN BACU007872/1-1188 RSPHSAAEKT AGGVSVGFSP LCSPSAAAIS GPSPSLVIDG RSLAYALERN 1001 1050 ENSBTAP00000035070/1-1499 LEDKFLFLAK QCRSVLCCRS TPLQKSMVVK LVRSKLKAMT LAIG------ ENSTTRP00000001055/1-1496 LEDKFLFLAK QCRSVLCCRS TPLQKSMVVK LVRSKLKAMT LDIG------ bmy_11591T0/1-1387 LEDKFLFLAK QCRSVLCCRS TPLQKSMVVK LVRSKLKAMT LAIGKQTLHC BACU007872/1-1188 LEDKFLFLAK QCRSVLCCRS TPLQKSMVVK LVRSKLKAMT LAIG------ 1051 1100 ENSBTAP00000035070/1-1499 ---------- ---------- ---------- ---------D GANDVSMIQV ENSTTRP00000001055/1-1496 ---------- ---------- ---------- ---------D GANDVSMIQ- bmy_11591T0/1-1387 LFLTPPQDPS QDPAHGDPMK IHQADLILCI STQMMLPARD GANDVSMIQV BACU007872/1-1188 ---------- ---------- ---------- ---------D GANDVSMIQV 1101 1150 ENSBTAP00000035070/1-1499 ADVGVGISGQ EGMQAVMASD FAVPKFRYLE RLLIVHGHWC YSRLANMVLY ENSTTRP00000001055/1-1496 ADVGVGLSGQ EGMQAVMASD FAVPKFRYLE RLLIVHGHWC YSRLANMVLY bmy_11591T0/1-1387 ADVGVGLSGQ EGMQAVMASD FAVPKFRYLE RLLIVHGHWC YSRLANMVLY BACU007872/1-1188 ADVGVGLSGQ EGMQAVMASD FAVPKFRYLE RLLIVHGHWC YSRLANMVLY 1151 1200 ENSBTAP00000035070/1-1499 FFYKNTMFVG LLFWFQFYCG FSASAMIDQW YLIFFNLLFS SLPQLVTGVL ENSTTRP00000001055/1-1496 FFYKNTMFVG LLFWFQFYCG FSASAMIDQW YLIFFNLLFS SLPQLVTGVL bmy_11591T0/1-1387 FFYKNTMFVG LLFWFQFYCG FSASAMIDQW YLIFFNLLFS SLPQLVTGVL BACU007872/1-1188 FFYKNTMFVG LLFWFQFYCG FSASAMIDQW YLIFFNLLFS SLPQLVTGVL 1201 1250 ENSBTAP00000035070/1-1499 DKDVPADVLL AEPQLYRSGQ NMEEYRPRTF WLNMADAAFQ SLVCFFIPYL ENSTTRP00000001055/1-1496 DKDVPADVLL TKPQLYKSGQ NMEEYRPRTF WLNMADAAFQ SLVCFFIPYL bmy_11591T0/1-1387 DKDVPADVLL TKPQLYKTGQ NMEEYRPRTF WLNMADAAFQ SLVCFFIPYL BACU007872/1-1188 DKDVPADVLL TKPQLYKTGQ NMEEYRPRTF WLNMADAAFQ SLVCFFIPYL 1251 1300 ENSBTAP00000035070/1-1499 AYYDSDTDIF TWGTPITAVA LFTFLLHLGI ETKTWTWLNW TACGFSVVLF ENSTTRP00000001055/1-1496 AYHDSDTDMF TWGTPITAIA LFTFLLHLGI ETKTWTWLNW MACGFSILLF bmy_11591T0/1-1387 AYHDSDTDMF TWGTPITAIA LFTFLLHLGI ETKTWTWLNW MACGFSILLF BACU007872/1-1188 AYHDSDTDMF TWGTPITTIA LFTFLLHLGI ETKTWTWLNW MACGFSILLF 1301 1350 ENSBTAP00000035070/1-1499 FTVALIYNAS CATCYPPSNP YWTMQTLMGD PVFYSICLLA PVAALLPRLF ENSTTRP00000001055/1-1496 FTVALIYNAS CAMCYPPSNP YWTMQTLMGD PVFYFICLIA PVAALLPRLF bmy_11591T0/1-1387 FTVALIYNAS CAMCYPPSNP YWTMQTLMGD PVFYFICLIA PVAALLPRLF BACU007872/1-1188 FTVALIYNAS CAMCYPPSNP YWTMQTLMGD PVFYFICLIA PVAALLPRLF 1351 1400 ENSBTAP00000035070/1-1499 FKALQGTLFP TPLQLGRQLA KRSPGKFRAP RETSAQGHIP EEARTKLPGQ ENSTTRP00000001055/1-1496 FKALQRSLFP TQLQLGRQLD KS-PRKLRPP KETFA-GHLP GEPRE--SEQ bmy_11591T0/1-1387 FKALQGSLFP TQLQLGRQLV RRSPRKLGAP KETFAQGHLP GEPRTEPSEQ BACU007872/1-1188 FKALQGSLFP TQLQLGRQLV RRSPRKLRAP KETFAQGHLP GEPRTEPSEQ 1401 1450 ENSBTAP00000035070/1-1499 RSVSVARFVS RDCSSQVSQG TWQPACSPEA GGEPSAVDMG MPWREGTLPD ENSTTRP00000001055/1-1496 RA-SASGSFP R-----TFWH AQQSSCSPEA SGEPSVVDMG MSLREDTLLE bmy_11591T0/1-1387 RSISASGSFS QDCSSQVFWH SQQPACSPEA SGVPSVVDVG VSLREDTLLE BACU007872/1-1188 RSISASGSFS QDCSSQVFWH SQQPACSPEA SGVPSVVDMG VSLREDTLLE 1451 1500 ENSBTAP00000035070/1-1499 RLDSQPSRSS SPGPVAVEGC PGGSRMKPMS ASRPAPLPSV FSVPGLSSLN ENSTTRP00000001055/1-1496 GLGSQTPGSS SPREVIPEGC PGDSKMKPTS ASRAAALSSI FSLPSLSSLN bmy_11591T0/1-1387 GLGSQTPGSS SPGEVIPEGC PGDSKMKPTS ASRAAALSSI FTLPSLRSLN BACU007872/1-1188 GLGSQTTGSS SPREVIPEGC PGDSKMKPTS ASRAAALSSF FSLPSLSSLN 1501 1550 ENSBTAP00000035070/1-1499 WMSSLSLVSG LGSVLQF--- ---SRSG--- ---------- -LPMDKRDSD ENSTTRP00000001055/1-1496 WISSLSLVSG LGSVLQFSKW FTDGQAGRRV PTQPPAARPG PARLEWADHG bmy_11591T0/1-1387 WISSLSLRAG KRPTV-LPKW FAAGQAGRRV PTQPPAARPG PARLEWADHR BACU007872/1-1188 WISSLSLVSG LGSVLQF--- ---SQSG--- ---------- -LQMDKRDSE 1551 1600 ENSBTAP00000035070/1-1499 FLPGSAPPD- ------QDLC ---------- --DLSGQTTD CF-------- ENSTTRP00000001055/1-1496 LLLGPPSRDY NWWWQW---- ---------- ---------- ---------- bmy_11591T0/1-1387 LLLGPPSRDY SWWWQRRVLV RCILYISKAN TGNESGNTCE HSEPWAGADD BACU007872/1-1188 FLPSPPQPD- ------QDLQ ---------- --GLSGQTTD YF-------- 1601 1650 ENSBTAP00000035070/1-1499 ---------- ---------- ---------- ------ ENSTTRP00000001055/1-1496 ---------- ---------- ---------- ------ bmy_11591T0/1-1387 VRGGDGHAHV PSRDPHCLSL NPTTGRVGSA SPGKGK BACU007872/1-1188 ---------- ---------- ---------- ------