KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:45:09 2014 Check: 00 .. Name: ENSTTRP00000000532/1-929 Len: 1225 Check: 7423 Weight: 1.00 Name: ENSP00000263088/1-933 Len: 1225 Check: 4945 Weight: 1.00 Name: ENSBTAP00000035115/1-904 Len: 1225 Check: 5898 Weight: 1.00 Name: bmy_08648T0/1-982 Len: 1225 Check: 833 Weight: 1.00 Name: BACU001284/1-1178 Len: 1225 Check: 8550 Weight: 1.00 // 1 50 ENSTTRP00000000532/1-929 ---------- ---------- ---------- ---------- ---------- ENSP00000263088/1-933 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000035115/1-904 ---------- ---------- ---------- ---------- ---------- bmy_08648T0/1-982 ---------- -----MHGEG SAVPHSRGRP QRPGCT---- ---------Q BACU001284/1-1178 MAATLVAARG ARPAPAWGPE AITPDWENRE VSTGTTIMAV QFDGGVVLGA 51 100 ENSTTRP00000000532/1-929 ---------- ---------- ---------- ---------- ---------- ENSP00000263088/1-933 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000035115/1-904 ---------- ---------- ---------- ---------- ---------- bmy_08648T0/1-982 DCRAGRGRRG RDRTDEN--P EEPR---CR- ---------- ---------- BACU001284/1-1178 DSRTTTGSYI ANRVTDKLTP IHDRIFCCRS GSAADTQAVA DAVTYQLGFH 101 150 ENSTTRP00000000532/1-929 ---------- ---------- ---------- ---------- ---------- ENSP00000263088/1-933 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000035115/1-904 ---------- ---------- ---------- ---------- ---------- bmy_08648T0/1-982 ---------- ---------- ---------- ------W--- ---------- BACU001284/1-1178 SIELNEPPLV HTAASLFKEM CYRYREDLMA GIIIAGWDPQ EGGQVYSVPM 151 200 ENSTTRP00000000532/1-929 ---------- ---------- ---------- ---------- ---------- ENSP00000263088/1-933 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000035115/1-904 ---------- ---------- ---------- ---------- ---------- bmy_08648T0/1-982 ---------- LGLPG----- ---------- ---------- ---------- BACU001284/1-1178 GGMMVRQSFA IGGSGSSYIY GYVDATYREG MTKEECLRFT ANALALAMER 201 250 ENSTTRP00000000532/1-929 ---------- ---------- ---------- ---------- ---------- ENSP00000263088/1-933 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000035115/1-904 ---------- ---------- ---------- ---------- ---------- bmy_08648T0/1-982 ---------- ---------- ---------- ---------- ---------- BACU001284/1-1178 DGSSGGVIRL AAIAESGVER QSMDKGTVEA TFENLVLEYN PTLEDFGGYR 251 300 ENSTTRP00000000532/1-929 -------MAA TSESLFPSGG DLDSRQLQME PDEVDTLKEG EDSADRMHPF ENSP00000263088/1-933 -------MTA TPESLFPTGD ELDSSQLQME SDEVDTLKEG EDPADRMHPF ENSBTAP00000035115/1-904 -------MAA TPQSLFPSGD DLDSSQLQME PDEVDTLKEG EDPADRMHPF bmy_08648T0/1-982 -------MAA TSESLFPSGG DLDSRQLQME PDEVDTLKEG EDPADRMHPF BACU001284/1-1178 GGFLRRWMAG TSESLFPSGG DLDSSQLQME PDEVDTLKEG EDSADRMHPF 301 350 ENSTTRP00000000532/1-929 LAIYDLQPLK IHPLVFAPGV PVIAQVVGTE RYT------- ---------- ENSP00000263088/1-933 LAIYELQSLK VHPLVFAPGV PVTAQVVGTE RYTSGSK--- ---------- ENSBTAP00000035115/1-904 LAIYHLQPLK LHPLVFAPGV PVIAQVVGTE RYTSGSK--- ---------- bmy_08648T0/1-982 LAIYDLQSLK IHPLVFAPGV PVIAQVVGTE RYTSGSKVAG LAPGRGLRGG BACU001284/1-1178 LAIYDLQPLK IHPLVFAPGV PVIAQVVGTE RYTSGSK--- ---------- 351 400 ENSTTRP00000000532/1-929 ---------- ---------- --VGTCTLYS VRLTHGDFTW TTKKKFRHFQ ENSP00000263088/1-933 ---------- ---------- --VGTCTLYS VRLTHGDFSW TTKKKYRHFQ ENSBTAP00000035115/1-904 ---------- ---------- --VGTCTLYS VRLTHGDFTW TTKKKFRHFQ bmy_08648T0/1-982 LARAGAATQP GNIHSVSSSL PQVGTCTLYS VCFTHGDFTW TTKKKFRHFQ BACU001284/1-1178 ---------- ---------- --VGTCTLYS VRFTHGDFTW TTKKKFRHFQ 401 450 ENSTTRP00000000532/1-929 ELHRDLLRHK VLMSLLPLAR FAVASSPAQE ANNRQMPSLP RAGPEGSARH ENSP00000263088/1-933 ELHRDLLRHK VLMSLLPLAR FAVAYSPARD AGNREMPSLP RAGPEGSTRH ENSBTAP00000035115/1-904 ELHRDLLRHK VFMSLLPLAR FAVASSPAPE GDSREIPSLP RAGPEGSSRR bmy_08648T0/1-982 ELHRDLLRHK VLTSLLPLAR FAVAYSPAQE ATNREMPSLR RAGPEGSARH BACU001284/1-1178 ELHRDLLRHK VLTSLLPLTR FAVAYSPAQE ANNREMPSLR QAGPEGSARH 451 500 ENSTTRP00000000532/1-929 ASSKQKYLED YLNRLLTMSF YRNYHAMTEF LEVSQLSFIP DLGSKGLEGV ENSP00000263088/1-933 AASKQKYLEN YLNRLLTMSF YRNYHAMTEF LEVSQLSFIP DLGRKGLEGM ENSBTAP00000035115/1-904 TASKQKYLEN YLNRLLTMSF YRNYHAMTEF LEVSQLSFIP DLGCKGLEGV bmy_08648T0/1-982 ASSKQKYLEN YLNCLLTMSF YRNYHAMTEF LEVSQLSFIP DLGSKGLEGV BACU001284/1-1178 ASSKQKYLEN YLNRLLTMSF YRNYHAMTEF LEVSQLSFIP DLGSKGLEGV 501 550 ENSTTRP00000000532/1-929 IRKRSGGHRV PGLTCCGRDQ VCYRWSKRWL VVKDSFLLYM CLETGTITFV ENSP00000263088/1-933 IRKRSGGHRV PGLTCCGRDQ VCYRWSKRWL VVKDSFLLYM CLETGAISFV ENSBTAP00000035115/1-904 IRKRSGGHRV PGLTCCGRDQ VCYRWSKRWL VVKDSFLLYM CLETGAISFV bmy_08648T0/1-982 IRKRSGGHRV PGLT-CGRDQ VCYRWSKRWL VVKDSFLLYM CLKTGAITFV BACU001284/1-1178 IRKRSGGHRV PGLTFCGRDQ VCYRWSKRWL VVKDSFLLYM CLKTGTITFV 551 600 ENSTTRP00000000532/1-929 QLFDPGFEVQ VGKRSTEARY GVRIDTSHRS MIIKCSSYRQ ARWWAQEITE ENSP00000263088/1-933 QLFDPGFEVQ VGKRSTEARH GVRIDTSHRS LILKCSSYRQ ARWWAQEITE ENSBTAP00000035115/1-904 QLFDPGFKVQ VGKRSTEARY GVRVDTSHRS LILKCSSYRQ ARWWAQEITE bmy_08648T0/1-982 QLFDPGFKVQ VGKRSTEARY GVRIDTSHRS LILKCSSYRQ ARWWAQEITE BACU001284/1-1178 QLFDPGFKVQ VGKRSTEARY GVRIDTSHRS LILKCSSYRQ ARWWAQEITE 601 650 ENSTTRP00000000532/1-929 LAHGPGRDFV QLHRHESYAP PRPGTLARWF VNGAGYFAAA ADAILRAQEE ENSP00000263088/1-933 LAQGPGRDFL QLHRHDSYAP PRPGTLARWF VNGAGYFAAV ADAILRAQEE ENSBTAP00000035115/1-904 LAQGPGRDFI QLHRHDSYAP PRPGTLARWF VNGAGYFAAV ADAILRAQEE bmy_08648T0/1-982 LAQGPGRDFV QLHRHESYAP PRPGTLARWF VNGAGYFAAA ADAILRAQEE BACU001284/1-1178 LARGPGRDFV QLHRHESYAP PRPGTLARWF VNGAGYFAAA ADAILRAQEE 651 700 ENSTTRP00000000532/1-929 IFITDWWLSP EIYLKRPAHS DDWRLDIMLK KKAXXXXXXX XXXXXXXXXX ENSP00000263088/1-933 IFITDWWLSP EVYLKRPAHS DDWRLDIMLK RKAEEGVRVS ILLFKEVELA ENSBTAP00000035115/1-904 IFITDWWLSP EIYLKRPAHS DDWRLDIMLK KKAEEGVHVS VLLFKEVELA bmy_08648T0/1-982 IFITGWWLSP EIYLKRPAHS DDWRLDIMLK KKA------- ---------- BACU001284/1-1178 IFITGWWLSP EIYLKRPAHS DDWRLDIMLK KKA------- -----EVELA 701 750 ENSTTRP00000000532/1-929 XXXXXXXXXX XXXXXXXXXX XXRHPDQVTL WAHHEKLLVV DQVVAFLGGL ENSP00000263088/1-933 LGINSGYSKR ALMLLHPNIK VMRHPDQVTL WAHHEKLLVV DQVVAFLGGL ENSBTAP00000035115/1-904 LAINSGYSKK ALMLLHPNIK VMRHPDQVTL WAHHEKLLVV DQVVAFLGGL bmy_08648T0/1-982 ---------- ---------- VMRHPDQVTL WAHHEKLLVV DQVVAFLGGL BACU001284/1-1178 LAINSDYSKK VLMLLHPNVK VMRHPDQVTL WAHHEKLLVV DQGVAFLGGL 751 800 ENSTTRP00000000532/1-929 DLAYGRWDDL HYRLTDLRDS SESAAPQPPT SCSDPPATPD LSHNQLFWLG ENSP00000263088/1-933 DLAYGRWDDL HYRLTDLGDS SESAASQPPT PRPDSPATPD LSHNQFFWLG ENSBTAP00000035115/1-904 DLAYGRWDDL HYRLTDLGDS SESAAPQPPT SCSDLPATPD LTHNQLFWLG bmy_08648T0/1-982 DLAYGRWDDL HYRLTDLGDS SESAAPQPPT SCSDPPATPD LSHNQLFWLG BACU001284/1-1178 DLAYGRWDDL HYRLTDLGDS SESAAPQPPT SCSDPRATPD LSHNQLFWLG 801 850 ENSTTRP00000000532/1-929 KDYSNLITKD WVQLDRPFED FIDRETTPRM PWRDVGVVVH GSPARDLARH ENSP00000263088/1-933 KDYSNLITKD WVQLDRPFED FIDRETTPRM PWRDVGVVVH GLPARDLARH ENSBTAP00000035115/1-904 KDYSNLITKD WVQLDRPFDD FIDRETMPRM PWRDIGVVVH GSPARDLARH bmy_08648T0/1-982 KDYSNPITKD WVQLDRPFED FIDRETTPRM PWRDVGVVVH GSPARDLARH BACU001284/1-1178 KDYSNLIAKD WVQLDRPFED FIDRETTPRM PWRDVGVVVH GSPARDLARH 851 900 ENSTTRP00000000532/1-929 FIQRWNFTKT TKAKYKIPRY PYLLPKSIST ANQLPFMLPG VQCATVQVLR ENSP00000263088/1-933 FIQRWNFTKT TKAKYKTPTY PYLLPKSTST ANQLPFTLPG GQCTTVQVLR ENSBTAP00000035115/1-904 FIQRWNFTKT TKTKYKIPIY PYLLPKSTST ANQLPFTLSG GQCATVQVLR bmy_08648T0/1-982 FIQRWNFTKN TKAKYKIPMY PYLLPKSTST ANQLPFMLPG VQCATVQVLR BACU001284/1-1178 FIQRWNFTKN TKAKYKIPMY PYLLPKSTST ANQLPFMLPG VQCATVQVLR 901 950 ENSTTRP00000000532/1-929 SVDRWSAGTL ENSILNAYLH TIRESQHFLY IEXXXXXXXX XXXXXXXXXX ENSP00000263088/1-933 SVDRWSAGTL ENSILNAYLH TIRESQHFLY IENQFFISCS DGRTVLNKVG ENSBTAP00000035115/1-904 SVDRWSAGTL ENSILNAYLH TIRESQHFLY IENQFFISCS DGRTVLNKVG bmy_08648T0/1-982 SVDRWSAGTL ENSILNAYLH TIRESQHFLY IENQFFISCS DGRTVLNKVG BACU001284/1-1178 SVDRWSAGTL ENSILNAYLH TIRESQHFLY IENQFFISCS DGRTVLNKVG 951 1000 ENSTTRP00000000532/1-929 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000263088/1-933 DEIVDRILKA HKQGWCYRVY VLLPLLPGFE GDISTGGGNS IQAILHFTYR ENSBTAP00000035115/1-904 DEIVDRILKA HKQGQCFRVY VLLPLLPGFE GDISTGGGNS IQAILHFTYR bmy_08648T0/1-982 DEIVDRILKA HKQGQCFRVY MLLPLLPGFE GDISTGGGNS IQAILHFTYR BACU001284/1-1178 DEIVDRILKA HKQGQCFRVY MLLPLLPGFE GDISTGGGNS IQAILHFTYR 1001 1050 ENSTTRP00000000532/1-929 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000263088/1-933 TLCRGEYSIL HRLKAAMGTA WRDYISICGL RTHGELGGHP VSELIYIHSK ENSBTAP00000035115/1-904 TLCRGEYSIL HRLKAAMGTE WRNYISVCGL RTHGELGGHP VSELIYIHSK bmy_08648T0/1-982 TLCRGEYSIL HRLKAAMGTA WRDYISICGL RTHGELGRHP VSELVYIHSK BACU001284/1-1178 TLCRGEYSIL HRLKAAMGTA WRDYISICGL RTHGELGRHP VSELVYIHSK 1051 1100 ENSTTRP00000000532/1-929 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000263088/1-933 VLIADDRTVI IGSANINDRS LLGKRDSELA VLIEDTETEP SLMNGAEYQA ENSBTAP00000035115/1-904 MLIADDRTVI IGSANINDRS LLGKRDSELA VLIEDTEMEP SLMNGVEYQA bmy_08648T0/1-982 MLIADDRTVI IGSANINDRS LLGKRDSELA VLIEDTEMEA SLMNGVEYQA BACU001284/1-1178 MLIADDRTVI IGSANINDRS LLGKRDSELA VLIEDTEMEA SLMNGVEYQA 1101 1150 ENSTTRP00000000532/1-929 XXXXXXXXXX XXXVILGADA RPDLDLRDPV CDDFFQSWQD TAESNANIYE ENSP00000263088/1-933 GRFALSLRKH CFGVILGANT RPDLDLRDPI CDDFFQLWQD MAESNANIYE ENSBTAP00000035115/1-904 GRFALSLRKH CFSVILGAAA RPHLDLRDPV CDAFFQLWQD TAESNANIYE bmy_08648T0/1-982 GRFALSLRKH CFSVILGADA RPDLDLRDPV CDDFFQSWQD TAENNANIYE BACU001284/1-1178 GRFALSLRKH CFSMILGADG RPDLDLRDPV CDDFFQSWQD TAESNANIYE 1151 1200 ENSTTRP00000000532/1-929 QIFRCLPSNA IRSLRALREY VAVEPLATVS PPLARSELTQ VQGHLVHFPL ENSP00000263088/1-933 QIFRCLPSNA TRSLRTLREY VAVEPLATVS PPLARSELTQ VQGHLVHFPL ENSBTAP00000035115/1-904 QIFRCLPSNA TRSLRALREY VVVEPLATVS PP-RRSELNQ VQGHLVH--- bmy_08648T0/1-982 QIFRCLPSNA TRSLRALREY VAAEPLATVS PPMARSELTQ VQGHLVHFPL BACU001284/1-1178 QIFRCLPSNA TRSLRALREY VAAEPLATVS PPLARSELTQ VQGHLVHFPL 1201 1250 ENSTTRP00000000532/1-929 KFLEDESLLP PLGSKEGVMP LEVWT ENSP00000263088/1-933 KFLEDESLLP PLGSKEGMIP LEVWT ENSBTAP00000035115/1-904 ---------- ---------- ----- bmy_08648T0/1-982 KFLEDESLLP TLGSKEGMIP LEVWT BACU001284/1-1178 KFLEDESLLP PLGSKEGMIP LEVWT