KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:45:10 2014 Check: 00 .. Name: ENSTTRP00000003758/1-558 Len: 672 Check: 5544 Weight: 1.00 Name: ENSP00000392411/1-641 Len: 672 Check: 2445 Weight: 1.00 Name: bmy_00107T0/1-609 Len: 672 Check: 5364 Weight: 1.00 Name: ENSBTAP00000035160/1-592 Len: 672 Check: 9186 Weight: 1.00 // 1 50 ENSTTRP00000003758/1-558 ---------- ---------- ---------- ---------E AYCAYTIILM ENSP00000392411/1-641 MAT-CWQALW AYRSYLIVFF VPILLLPLP- -ILVPSK--E AYCAYAIILM bmy_00107T0/1-609 MATGC----- ---------S VPVTGLPPPT ALLFPSRLQE AYCAYTIILM ENSBTAP00000035160/1-592 MAT-CWQGLW AYRFYLIVFF LPIFLLPLP- -ILVPTK--E ACCAYTIILM 51 100 ENSTTRP00000003758/1-558 AFLWCTEALP LAITAFLPTV MFPMMGIMGA S--------- ---------- ENSP00000392411/1-641 ALFWCTEALP LAVTALFPLI LFPMMGIVDA SEIIQRPFPS SFESPGECQS bmy_00107T0/1-609 ALLWCTEALP LAITAFLPTV MFPMMGIMGA S--------- ---------- ENSBTAP00000035160/1-592 ALLWCTEALP LAVTAFLPVI MFPMMGIMTA S--------- ---------- 101 150 ENSTTRP00000003758/1-558 ---------- ---------- ---------- ---VXXXXXX XXXXXXXXXX ENSP00000392411/1-641 VGMSVTASHN LGGTVGDSRV FPPLSHVSTC QVAVEYLKDS NLLFFGGLLV bmy_00107T0/1-609 ---------- ---------- ---------- VVSAEYLKDT NILFIGGMLV ENSBTAP00000035160/1-592 ---------- ---------- ---------- TVSLEYLKDT NILFIGGMMV 151 200 ENSTTRP00000003758/1-558 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000392411/1-641 AIAVEHWNLH KRIALRVLLI VGVRPAPLIL GFMLVTAFLS MWISNTATSA bmy_00107T0/1-609 ALAVEHWNLH KRIALRVLLI IGVRPSLLIL GFMVVTAFLS MWISNTATTA ENSBTAP00000035160/1-592 ALAVETWNLH KRIALRVLLI IGVRPALLIL GFMLVTAFLS MWISNTATTA 201 250 ENSTTRP00000003758/1-558 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXN ENSP00000392411/1-641 MMVPIAHAVL DQLHSSQASS NVEEGSNNPT FELQEPSPQK EVTKL---DN bmy_00107T0/1-609 MMVPIAHAVL EQLHKMPRGK DVEEGENNPA FELQEPSSQK EETKLDEKDN ENSBTAP00000035160/1-592 MMLPIAHAVL EQLHKMPTDR DVEEGRHNPA FELQE---QK EETKLDEKDN 251 300 ENSTTRP00000003758/1-558 KQDGPAPPVP SESRAQRNEE QLRFTQGMSL CVCYSASIGG IATLTGTTTN ENSP00000392411/1-641 GQALPVTSAS SEGRAHLSQK HLHLTQCMSL CVCYSASIGG IATLTGTAPN bmy_00107T0/1-609 KQDGPAPPVP SEPKAQQDEE QLRFTRGMSL CVCYSASIGG IATLTGTTTN ENSBTAP00000035160/1-592 KQDCPALPTP SESKTQQNKE QLRFSQGLSL CVCYSASIGG IATLTGTTPN 301 350 ENSTTRP00000003758/1-558 LVLQGQVNSI FPQNGNVVNF ASWFFFAFPT MVILLLLSWV WLQFLFLRFN ENSP00000392411/1-641 LVLQGQINSL FPQNGNVVNF ASWFSFAFPT MVILLLLAWL WLQILFLGFN bmy_00107T0/1-609 LVLQGQVNSL FPENGNVVNF ASWFVFAFPT MVILLLLSWV WLQFLFLGFN ENSBTAP00000035160/1-592 LVLQGQVNSI FPRNGNVVNF ASWFGFAFPA MIILLLLSWV WLQILFLGFD 351 400 ENSTTRP00000003758/1-558 FRKNCGLGDQ MRKQERAAFE VIRREHKRLG PMTFAEKAVT ILFVLLVVLW ENSP00000392411/1-641 FRKNFGIGEK MQEQQQAAYC VIQTEHRLLG PMTFAEKAIS ILFVILVLLW bmy_00107T0/1-609 FRKNCGLGDQ MREQERAAFE VIRREHKLLG PMTFAEKAVS TLFVLLVVLW ENSBTAP00000035160/1-592 FRKNFGLGEQ SKNQERAAFE VIRREHKLLG PINFAEKAVT FLFVLLVVLW 401 450 ENSTTRP00000003758/1-558 FTREPGFFTG WGNLAFSDEN GNSMPSDGTV AILIGVILFI VPSKIPGLTQ ENSP00000392411/1-641 FTREPGFFLG WGNLAFPNAK GESMVSDGTV AIFIGIIMFI IPSKFPGLTQ bmy_00107T0/1-609 FTREPGFFTG WGNLAFSDED GISMPSDGTV AILIAVILFI VPSKIPGLTQ ENSBTAP00000035160/1-592 FTREPGFFTG WGNLAFSDEN GKSMTSDGTV AILIAVIMFI VPSKIPGLTQ 451 500 ENSTTRP00000003758/1-558 EP-------- ---------- -----GKPEK LKAPPALLNW KIVKEKMPWN ENSP00000392411/1-641 DP-------- ---------- -----ENPGK LKAPLGLLDW KTVNQKMPWN bmy_00107T0/1-609 EPEGGREGKE SLLALGDPSS SAWGVGKPGK LKAPPALLNW KIVKEKMPWN ENSBTAP00000035160/1-592 KP-------- ---------- -----GNPGK LKAPPALLTW DIVKKKMPWN 501 550 ENSTTRP00000003758/1-558 IVLLLGGGFA LAKGSEESGL SKWLGDKLTP LESVPPPAIA LILCLLIATF ENSP00000392411/1-641 IVLLLGGGYA LAKGSERSGL SEWLGNKLTP LQSVPAPAIA IILSLLVATF bmy_00107T0/1-609 IVLLLGGGFA LAKGSEESGL SKWLGDKLTP LESVPPPAIA FILCLLIATF ENSBTAP00000035160/1-592 IVILLGGGFA LAKGSEESGL SKWLGDKLTP LESVPPAAIA FIICLLIAVF 551 600 ENSTTRP00000003758/1-558 TECTSNVATT TIFLPILASM SQAICIHPLY VMLPCTLASS LAFMLPVATP ENSP00000392411/1-641 TECTSNVATT TIFLPILASM AQAICLHPLY VMLPCTLATS LAFMLPVATP bmy_00107T0/1-609 TECASNVATT TIFLPILASM SQAICIHPLY VMLPCTLSSS LAFMLPVATP ENSBTAP00000035160/1-592 TECTSNVATT TLFLPILASM SQAICIHPLY VMLPCTLASS LAFMLPVATP 601 650 ENSTTRP00000003758/1-558 PNAIAFSFGG LKVTDMARAG FMLNIIGVLV ITLAINTWSI PMFDLHRFPS ENSP00000392411/1-641 PNAIVFSFGD LKVLDMARAG FLLNIIGVLI IALAINSWGI PLFSLHSFPS bmy_00107T0/1-609 PNAIAFSFGG LKVTHMAQAG FMLNILGVLV ITLAINTWSI PMFDLHSFPS ENSBTAP00000035160/1-592 PNAIAFSFGG LRVTDMARAG FMLNIIGVLV ITLAINSWSI PMFDLHSFPS 651 700 ENSTTRP00000003758/1-558 WAQSNTTGFC GVSQANVTTP SP ENSP00000392411/1-641 WAQSNTTAQC LPSLANTTTP SP bmy_00107T0/1-609 WAQSNTTGFC GVSQANITTP SP ENSBTAP00000035160/1-592 WAQSNTTGLC GVSQANVTTS SP